Breaker Lab Bioinformatics

Notes

I recommend viewing the HTML alignnments.
The stems and secondary structure are labeled at the bottom of the files.
Pseudoknots are not currently annotated (or aligned correctly) in many of the files because I have to merge them in from a separate automated alignment.
I'm still updating some of the secondary structures to go with the x-ray crystal structures.
AAAA to aaaa represents pseudoknotted pairs.

Riboswitch	Stockholm	HTML
TPP	Stockholm	HTML
AdoCbl	Stockholm	HTML
Lysine	Stockholm	HTML
Glycine	Stockholm	HTML
SAM-I	Stockholm	HTML
FMN	Stockholm	HTML
Purine	Stockholm	HTML
GlcN6P	Stockholm	HTML
PreQ₁	Stockholm	HTML
SAM-II	Stockholm	HTML

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