BLISSBreaker Lab Intergenic Sequence ServerHome


Intergenic view options: Interleaved


NC_000964.1 Bacillus subtilis (+ 4188854 to 4189003) circular

Islands  .AC.A...G..C,,,CAA.ACAG.C.ACC....A...CA..CA....C.,,,,CC.G.AA.CCG.AACCACGCGG.AGCA
5'-   TACTATTTGTTCAAACAATACAGTCTACCTTTTATTTCATTCATTTTCTAAAACCTGTAATCCGTAACCACGCGGTAGCA
        |         |         |         |         |         |         |         |   
        4188860   4188870   4188880   4188890   4188900   4188910   4188920   4188
        |         |         |         |         |         |         |         |   
3'-   ATGATAAACAAGTTTGTTATGTCAGATGGAAAATAAAGTAAGTAAAAGATTTTGGACATTAGGCATTGGTGCGCCATCGT
Islands  A.GA.,,,CAAG...G..A.G.CAGA.GG,,,,.,,,G.AAG.,,,,GA....GGACA..AGGCA..GG.GCGCCA.CG.

 
Islands  GG.......A...GC..GAC..AGAG..AAC.C.,,,..G.,,,C.AAC...AA..,,,.GAGAGGGA.G
5'-   GGTTTTTTTATTTGCTTGACTTAGAGTTAACTCTAAATTGTAAACTAACTTTAATTAAATGAGAGGGATG
        |         |         |         |         |         |         |   
  930   4188940   4188950   4188960   4188970   4188980   4188990   4189000   
        |         |         |         |         |         |         |   
3'-   CCAAAAAAATAAACGAACTGAATCTCAATTGAGATTTAACATTTGATTGAAATTAATTTACTCTCCCTAC
Islands  CC,,,,,,,.,,,CGAAC.GAA.C.CAA..GAGA...AACA...GA..G,,,..AA...AC.C.CCC.AC

IGR  +  4188854  4189003  ()  17  yyaN yyaM

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 + 4188854 4189003 yyaN yyaM [COG0789 COG0697]
1 Oceanobacillus iheyensis B/C NC_004193.1 + 841517 841720 OB0786 [COG1064]
2 Streptococcus agalactiae B/C NC_004116.1 - 444268 444351 SAG0429 [COG0656]
3 Streptococcus agalactiae B/C NC_004116.1 - 443304 443412 SAG0428 SAG0427 SAG0426 SAG0425 [COG1063 COG0789 COG1917 COG0599]
4 Listeria innocua Clip11262 B/C NC_003212.1 + 2891940 2892023 lin2876 lin2877 [COG0789 COG1917]
5 Neisseria meningitidis serogroup B strain MC58 P-b NC_003112.1 - 1321311 1321430 NMB1303 [COG0789]
6 Shewanella oneidensis MR-1 P-g NC_004347.1 + 94517 94703 SO0083 [COG0599]
7 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 + 3702226 3702364 CAC3507 [COG0789]
8 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 + 893566 893873 CAC0771 CAC0772 CAC0773 [COG0310 COG0619 COG1122]
9 Neisseria meningitidis serogroup B strain MC58 P-b NC_003112.1 + 1321311 1321430 NMB1304 NMB1305 [COG1062 COG0627]
10 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 - 3702226 3702364 CAC3506 CAC3505 [COG0477 COG0655]
11 Staphylococcus epidermidis ATCC 12228 B/C NC_004461.1 - 1567390 1567518 SE1517 SE1516 [COG1131 -]
12 Lactococcus lactis subsp. lactis B/C NC_002662.1 - 236589 236777 ycdH [COG0477]
13 Helicobacter pylori 26695 P-e NC_000915.1 + 885991 886066 HP0834 [COG1160]
14 Haemophilus influenzae Rd P-g NC_000907.1 - 200611 200732 HI0185 HI0184 [COG1062 COG0627]
15 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 + 887257 887474 CAC0765 [COG1453]
16 Pasteurella multocida P-g NC_002663.1 - 1334998 1335149 PM1135 [COG1309]

________________________________________________________________________________
CTTTAGTTTCTCCTTTATAAATGAGTATAGACTTAGAG------------------------------------------
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GTTCAGCCGAACAGTCGCGATTAAATGC----------------------------------------------------
--------------------------------------------------------------------------------
TAATTTCATACTTAATACAATTACGTCGTATATTTATTACTATAATTATAAGTTAGCTATCTTTTAACATAAAGGTGTAA
--------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  AAT-----------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  ATTAATTTGAAGTGAAATTTGGAAACTACAGAATAAAACAATTTATAAAAGCTTTTAGAGAGCTT---------------
16  ATGTGGTGTATGTAAAAAAAACGTGGGATTCTCCCACGTTTTTTGTTTTTACACTTGCTTAAATATTAAAAAGTCTTAAA

 
_________________________________________________TACTATTTGTTCAAACAATACAG_TCTA___
-------------------------------------------------CTAACTCTAGGATTTTAGAGTAG-TTTA---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------TAACCAGTTGTTTTATATTTGTT-TGTG---
--------------------------------------------------------------------------------
ATGTTAAATATATAATTTAGAATTGTTTTTTTATATAGTTAACATTTACACTTATTTTATACTATTTAGAGT-AGGC---
--------------------------------------------------------------------------------
10  --------------------------------------------------------------TTTTGATATA-CCTC---
11  -------------------------------------------------AATGACACTCCTCTACAAATGTT-TGTT---
12  --------------------------------------------------------TTTTTCTCCTTTGAAC-TTAT---
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  -------------------------------------------------GAATTTTAATAAATATATGCCAT-CAGG---
16  ATGAACG------------------------------------------ATCGTTCATTTCAGA-AATACAGATCTATTT

 
____CCTTTTATTTCATTCATTTTCTAAAACCTGTAATCCGTAACCACGCGGTAGCAGGTTTTTTT___A___TTTGCTT
----TCATACTAATATGAAGTAGTCAAAATTAGTATGATGTGTGGAAGTTTAAAAAATAAAGGATA---A---ACCTCTT
----------------------------------------------------CCTGAGTGTTAGTT---T---TTTCCTT
----------------------AACCATATGCGGATTTTTACAGATGTTTAATTTTCAAAATTTTT---AAGTTTTTCTT
--------------------------------------------------ATGATCATGGTTGCTT---T---TTCGCTT
-------------TGTCTTTCCTCTTAATTCATTGACAAAGTTGCCTTGCCTGAGCAACATAGCAA---C---AGTTTAC
----CTGCTAGTCGGCGAGCTGGGGACCCGCTTTACAGTTCCGCATTGCCTGTGTCATCCATCAAT---G---AACCATT
-----------------------------------------ATTCTCTACCTCCTTAAGACTTCCT---T---AGTATAA
----TCCTGTGTTAACATAAATACGTGTATTTAATTTGCATATCAAGGTTAAATTGAAATTTTTTTCAAA---GTTACTT
-------------------------------------TTTCCCTCCTTCTAAACAAAAACAGTAAA---A---AACACTT
10  ----CTTAAAATTAGTTGTTTTATCTAGCTTAATTAATATTATATTAACATTAAAACTAAGAAATA---A---AAAGCTT
11  ----CATATTATATCATTCATTTTTTAAAACTACATCATTGTAAAGATTATTTTTAGGTCTATATA---A---TTTTTTT
12  ----AAAAATCACTTTTTTATGGCAATTTTACTTTTTTATTTTATTAATTAATAAAAAGTCAATTT---T---TTCTCTT
13  ----------------------------------------------------------CGCTAGAC---C---CTTATTT
14  -----------------------------------TTTTTATTCCCTTTAAACAAAAATGATAAAA---A---AACACTT
15  ----TTAATAAGCTGGTGGCATTTTTGATTTCTTAAAGAATGTAGTTAGAAAATTGAAGTTAAAAA---A---GGCACTT
16  CTGACTTTTTATTTCATTCATTTAGTGAACTTATT---------------------------------------------

 
GACTTAGAGTTAACTCTAA_A_______TTG_TAA_ACTA_A___CTT_TA_ATTA_AATGAG__AGGGATG________
GACTTAGAGTTAACTATAA-C-------GTT-TACCATTA-A---TTTGTA-AGTA-AACATA--AATTTCTAGGAGGTT
GACTTGGAGTTAACTCTAA-G-------TGT-TAA-GATT-A---GGT-CA-ATACTAATGAA--AGAAGGAAAATAAAG
GACTTGAAGTTAACTCTAA-G-------AGT-TAT-AATG-A---AGT-TA-TAGA-AAAGAG--GTAAGGTT-------
GACTTAAAGTTAACTCCAA-G---------G-AAT-ACAA-T---CAT-TATAGAA-AATCAG--TAAAGGAGAATGGCT
ACTTTAGAGTTAACTCTAA-AGCAAGTGTTT-TTT-ACTG-T---TTT-TG-TTTA-GAAG-G--AGGGAAA--------
GACTTAGAGCTAACTCTAA-G-------GTT-TAG-GCTG-CTTGCTG-TG-ATTT-AATCCA--ACAGGAGCTAAAA--
ACCTTAGAGTTAACTCTAA-A---------G-CAA-GCT-------TT-TT-ATTT-CTTAGT--TTTAATGTTAATATA
GACTTAGAGTTAACTTTAA-G-------TCT-TAT-AATA-T---TAT-TA-TTCG-CATAAA--TAAAATTTATTTGAT
GCTTTAGAGTTAACTCTAA-A-------GTG-TAA-ACTG-T---TGC-TA-TGTT-GCTCAG--GCAAGGCAACTTTGT
10  GCTTTAGAGTTAACTCTAA-G-------GTT-TAT-ACTA-A---GGA-AG-TCTT-AAGGAG--GTAGAGAAT------
11  TGATACAATAAAGTCAATG-G-------AGG-TGC-CTT-----------------------------------------
12  GACTTAGAGT-AACTCTAA-C-------TTGCTAT-AATA-T---AGC-AT-GTTG-ATTTCA--AAGTGTCAACCACCG
13  AAGCTTTAAATAACTATAATA-------TTG-TAA-TCTA-A---TTT-TG-ATTA-AATTGA--AGCGATAAAAAAG--
14  GCTTTAGAGTGAACTCTAA-A-------GTG-TAA-ACTG-T---TGC-TA-TCTT-GCTTAC--GTAAGGCAACTTTGT
15  GACTTAGAGTTAACTC-AA-A-------GTG------CTACA---CTT-TT-ATTG-AAAGAGTTAGGGGGTCTAGT---
16  --------------------------------------------------------------------------------

 
__________________________________________________
CTTTAT--------------------------------------------
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--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
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ATATTAATTAAGCTAGATAAAACAACTAATTTTAAGGAGGTATATCAAAA
TCAGGGGGAGATAAATTT--------------------------------
CAATGAATTAAGAGGAAAGACA----------------------------
10  --------------------------------------------------
11  --------------------------------------------------
12  CATTTTGAATCTTATTTTAAAATAGAAAAGAGTAAAAA------------
13  --------------------------------------------------
14  CAATGAATTAAGAGGAAAAACA----------------------------
15  --------------------------------------------------
16  --------------------------------------------------