BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (- 4165797 to 4166317) circular

Islands  G.G,,,,..C.CC...A.CGA.CAGA..CCA.A.CAGCA.A.GCCCAACGC.CAA.G..G..CA.GA.G....GAAG...
5'-   GTGAAAATTCTCCTTTATCGATCAGATTCCATATCAGCATATGCCCAACGCTCAATGTTGTTCATGATGTTTTGAAGTTT
         |         |         |         |         |         |         |         |  
         4166310   4166300   4166290   4166280   4166270   4166260   4166250   416
         |         |         |         |         |         |         |         |  
3'-   CACTTTTAAGAGGAAATAGCTAGTCTAAGGTATAGTCGTATACGGGTTGCGAGTTACAACAAGTACTACAAAACTTCAAA
Islands  CAC....AAGAGG,,,.AGC.AG.C.AAGG.A.AG.CG.A.ACGGG..GCGAG..ACAACAAG.AC.AC,,,,C..C,,,

  
Islands  ..,,,,,GGG,,,..CACC..A.A.AGGA.ACGGG..GAGAACA.GCAC,,,GAGG.G,,,CACAA.G.GGGACA.GA.,
5'-   TTAAAAAGGGAAATTCACCTTATATAGGATACGGGTTGAGAACATGCACAAAGAGGTGAAACACAATGTGGGACATGATA
         |         |         |         |         |         |         |         |  
  6240   4166230   4166220   4166210   4166200   4166190   4166180   4166170   416
         |         |         |         |         |         |         |         |  
3'-   AATTTTTCCCTTTAAGTGGAATATATCCTATGCCCAACTCTTGTACGTGTTTCTCCACTTTGTGTTACACCCTGTACTAT
Islands  ,,.....CCC...AAG.GGAA.A.A.CC.A.GCCCAAC.C..G.ACG.G...C.CCAC...G.G..ACACCC.G.AC.A.

  
Islands  ,,GAAC.....C..G...AGCAGCGGCG..C.GCAAGCAACAACCC....AC.GG.GA.C..AA.....A.G.A.G.CAG
5'-   AAGAACTTTTTCTTGTTTAGCAGCGGCGTTCTGCAAGCAACAACCCTTTTACTGGTGATCTTAATTTTTATGTATGTCAG
         |         |         |         |         |         |         |         |  
  6160   4166150   4166140   4166130   4166120   4166110   4166100   4166090   416
         |         |         |         |         |         |         |         |  
3'-   TTCTTGAAAAAGAACAAATCGTCGCCGCAAGACGTTCGTTGTTGGGAAAATGACCACTAGAATTAAAAATACATACAGTC
Islands  ..C..G,,,,,GAAC,,,.CG.CGCCGCAAGACG..CG..G..GGG,,,,.GACCAC.AGAA..,,,,,.ACA.ACAG.C

  
Term (95.90)%  ---------------------------------------------------------------GGCATTCTTTTCAAAGA
Islands  ,,,,,CG,,,,,G,,,,,CAAGGAA.C..C.GGC...A.GGA.GA.,,,CA..AA..G.GA.GGGCA..C....C,,,GA
5'-   AAAAACGAAAAAGAAAAACAAGGAATCTTCTGGCTTTATGGATGATAAACATTAATTGTGATGGGCATTCTTTTCAAAGA
         |         |         |         |         |         |         |         |  
  6080   4166070   4166060   4166050   4166040   4166030   4166020   4166010   416
         |         |         |         |         |         |         |         |  
3'-   TTTTTGCTTTTTCTTTTTGTTCCTTAGAAGACCGAAATACCTACTATTTGTAATTAACACTACCCGTAAGAAAAGTTTCT
Islands  .....GC.....C.....G..CC..AGAAGACCG,,,.ACC.AC.A...G.AA..AACAC.ACCCG.AAG,,,,G...C.

  
Term (95.90)%  ATGTC---------------------------------------------------------------------------
Islands  A.G.C....CC.....CA.G...CACA.G,,,CA..AGCG.CA....AC..GCGA...GGAC..A.G..,,,,.A.,,,,
5'-   ATGTCTTTTCCTTTTTCATGTTTCACATGAAACATTAGCGTCATTTTACTTGCGATTTGGACTTATGTTAAAATATAAAA
         |         |         |         |         |         |         |         |  
  6000   4165990   4165980   4165970   4165960   4165950   4165940   4165930   416
         |         |         |         |         |         |         |         |  
3'-   TACAGAAAAGGAAAAAGTACAAAGTGTACTTTGTAATCGCAGTAAAATGAACGCTAAACCTGAATACAATTTTATATTTT
Islands  .ACAG,,,,GG,,,,,G.AC,,,G.G.AC...G.AA.CGCAG.,,,,.GAACGC.,,,CC.GAA.ACAA....A.A....

  
Islands  G.,,,,...AGAGA.GA.A.,,,,,CA..CGG.GC,,,GCA.G..GCAGCGA.GAAC,,,,GAGCAG.CG...A.GC.GC
5'-   GTAAAATTTAGAGATGATATAAAAACATTCGGTGCAAAGCATGTTGCAGCGATGAACAAAAGAGCAGTCGTTTATGCTGC
         |         |         |         |         |         |         |         |  
  5920   4165910   4165900   4165890   4165880   4165870   4165860   4165850   416
         |         |         |         |         |         |         |         |  
3'-   CATTTTAAATCTCTACTATATTTTTGTAAGCCACGTTTCGTACAACGTCGCTACTTGTTTTCTCGTCAGCAAATACGACG
Islands  CA....,,,.C.C.AC.A.A.....G.AAGCCACG...CG.ACAACG.CGC.AC..G....C.CG.CAGC,,,.ACGACG

  
Islands  .C....C.A..CG.A.G..CAGGA.GA.ACGAGG.GAC.AA
5'-   TCTTTTCTATTCGTATGTTCAGGATGATACGAGGTGACTAA
         |         |         |         |   
  5840   4165830   4165820   4165810   4165800   
         |         |         |         |   
3'-   AGAAAAGATAAGCATACAAGTCCTACTATGCTCCACTGATT
Islands  AG,,,,GA.AAGCA.ACAAG.CC.AC.A.GC.CCAC.GA..

IGR  -   4165797  4166317  ()  13  yybS

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 - 4165797 4166317 yybS [-]
1 Vibrio vulnificus CMCP6 chromosome I P-g NC_004459.1 - 949199 949474 VV10941 [COG1738]
2 Vibrio cholerae chromosome I, complete chromosome P-g NC_002505.1 + 2117748 2117922 VC1967 [COG0840]
3 Lactobacillus plantarum WCFS1 B/C NC_004567.1 - 65840 66112 bsh2 [COG3049]
4 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 - 1621744 1622457 CAC1472 [COG1113]
5 Corynebacterium glutamicum Act NC_003450.2 + 3271098 3271464 Cgl3065 [-]
6 Clostridium perfringens B/C NC_003366.1 - 1857190 1857408 CPE1584 [-]
7 Thermoanaerobacter tengcongensis strain MB4T B/C NC_003869.1 - 2039967 2040067 TTE2121 [-]
8 Thermoanaerobacter tengcongensis strain MB4T B/C NC_003869.1 + 1177057 1177207 RuvC RuvA RuvB TTE1181 [COG0817 COG0632 COG2255 -]
9 Thermosynechococcus elongatus BP-1 Cya NC_004113.1 - 683383 683907 rfbB tll0664 rhnB pheT bioB [COG0451 COG1004 COG0164 COG0073|COG0072 COG0502]
10 Lactococcus lactis subsp. lactis B/C NC_002662.1 + 534143 534232 murA2 yfdG [COG0766 -]
11 Listeria monocytogenes strain EGD B/C NC_003210.1 - 2871108 2871317 lmo2784 [COG3711|COG1762]
12 Listeria monocytogenes strain EGD B/C NC_003210.1 - 1638128 1638419 lmo1594 [COG4477]

0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  GGGAATTGGCCAAATACCGGTTAAATCTACAAAAACTTCCTCTGATTCGGCGGTTGCCAATGATACGGATAATCCGCGTG
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  GGACATTCCCTCAAACAACTAACCTCAATAACAACGCTAGACTGTTGCGGTTTCTGTTGTCAGCGAATGGTATCACTGAG
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  GAGTCAATCACGGGTGCCAGAAATTGACAGGGTAGGGGGCAGCCCTTGTCAATCGTTGTACAAAGAGGATTTCCACTGAA
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  ___________________________GTGAAAATTCTCCTTTATCGATCAGATTCCATATCAGCATATGCCCAACGCT_
1  --------------------------------------------------------------------------------
2  ----------------------------------------------------------------TCCCACACCTTCTTC-
3  --------------------------------------------------------------------------------
4  ---------------------------------------------AACAATCTCCTCTTCATTTCTTCTCCTACAATAT-
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  TACTGCTGCTGGCCAGCATCAATGGCGGTAATGCAATCTCCCTAGCCCTATTGATCCCTAGGAGCATG-GATCAGCCCTT
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  CAATGTTGTTCATGATGTTTTGAAGTTTTTAAAAAGGGAAATTCACCTTATATAGGATACGGGTTGAGAACATGCACAAA
1  --------------------------------------------------------------------------------
2  CTCTATTATTCATGATGTTTTGAAGTTGCAGTCAATCGCGCTGCAACTTCTCCTCATAACCCCATTATTTATCCTCCCAA
3  --------------------------------------------------------------------------------
4  ATTGTGTACTTAATATGAATTTATATTACAAAGGACCTCTAAATAAAACTATTTCTTAAAAAGTTTTAACTTTAAACTTT
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  -------------------CAAACCTTTTGAAAAAGGGCATATACCCTTATATAGGATACGTGTGTCCAAAAATCCGTAC
8  -------------------TATGCTATCTAAGGATATGTAAGTCCCTGTTTTTGAAGGTAGGAAACAGGGACTTAATTTT
9  CAATGATGTTCATGATGTTTTGTAGGGTGTTCTCTAGGGGTTGGGCCTGCTGTCCTTGGGGGCTAGCGCCGGCGGGTACA
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  GAGGTGAAACACAATGTGGGACATGATAAAGAACTTTTTCTTGTTTAGCAGCGGCGTTCTGCAAGCAACAACCCTTTTAC
1  --------------------------------------------------------------------------------
2  TTAACCAATAACATCACCAAAACTGTTCTAGACTCAAAGTCACATTACCGACTTTTTCAGCCTTTCGTTTAGCACCAACA
3  --------------------------------------------------------------------------------
4  TCTTCTCTTATTGTTCTAAAAAAGTATATATAAAAAATGCAGTACTAATAATTTAAAAATTTACTAGTACAGCATTTTTT
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  CCAAAAAGTCAACCAAGCATAACAAAGGGGAAGGTATAGA----------------------------------------
8  ATCTTTGAAAGGTCGATTTCTCCTTCGGGAGAACTTTTTCTTGTTTACAAGCTCTGTTGATGTTAAAATAAATAAAAGGA
9  GGTCACTGCCAGGGGGAGCGATCGCGCACTAGAAGCGGACCAGAATCAGACATTGCTGGCCTCTGATAAACTCATGCTAA
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  TGGTGATCTTAATTTTTATGTATGTCAGAAAAACGAAAAAGAAAAACAAGGAATCTTCTGGCTTTATGGATGATAAACAT
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------TTCTTCCTCCATCTTAGATCGTCCATTATGTTAGTAGCTTTCCCCCTTATTTTAGGCTACTAACAT
4  TATTAATAGTTTAAAAATACGCAACCTGGTAATTATTATAATAGGATTGATTTTGCCTATAGCCATATATAACAACTTTA
5  -----------------------------------------------------------------------------TTA
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  GAGGAGAAGA----------------------------------------------------------------------
9  TCTAAGGCAAAGACAGAACGTCACTCATAATTTTTTAGATAACACA----------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  -----------------------TTTTTATCCCCACATTTCTTTTCAAATAATGTCTTTAGTATAGCATGAACGACAAGG

  
0  TAATTGTGATGGGCATTCTTTTCAAAGAATGTCTTTTC_CTTT_TTCA___TGTTTCACATGAAACATTAGCGTCATTTT
1  -------------------GTGCGAAATCTTTCATTTT-CAAA-GGGA---TGTTTCACATGAAACATCC-CTTTTTTAT
2  --------------------------------------------------------------------------------
3  CATTTATGATAGCGATT-TTGTCAT--------TTTAA-AAGC-ATAA---TGTTTCACGTGAAACATTAGCCTCATGAT
4  TATGAACAGAATTTCAATAATGACACAAAACTCATTT---TTA-TACT---TTTTTCTTAACAAAC-TGAAAAAATTGTT
5  TGGATAGGTAAACGCTCTACACGGTTTAAGTGTGGAGC-GTTT-TTCAA--TGTTTCACGTGAAACATTGCAACAAAAAT
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  ---------------------------------------------------ACAGAGTGAAATATTTCAGAAAAATGGAA
11  --------GTGAAAGCGAAAATCCTTTTTAGGGTTTTCGCTTT-TTTA---TGTTTCACGTGAAACTTTTTGGGCTAGAA
12  GATTTCGGGAAATTTGTTTTGTAATAGAATAGATTTTA-CTTGCTTCAAAATTTTTTTCGCTAAACGCAAG--TAATTCT

  
0  ACTTGCGATTTGGACTTATGTTAAAA_____TATAA__AAGTAAAATTTAGAGATGATATAAAA_ACATTCGGTGCAAAG
1  CGATGCATTTTGGCTCTGCTAGCGGC-----GAAAT--GGTGTTCAATCGTTTGCGTACCGCTC-ACTGCTTGTACTTGA
2  --------------------------------------------------------------------------------
3  GAGTTTCCCCAGCTTGTTAATTGAAC-----TACCC--CCTCAAAAGTAAACTTGATTACCATT-CGTTAATTTAAACGT
4  GCTTTTTCTTTAAATATATATTAATA-----TATAA--CAGTAAAATTTAATTGTTCAGATGAA-GTTAGCGGGAGAGCT
5  GGCGCTTTTCGACGCCCCCGCCGCCT-----CTTCA--CCGCTGTTAAGTGGCGGGCATTATGG-TTGTCGGGGCGAGAT
6  ----AAATATCCTCCCTATCTTAAAA-----TATAC--AAATAAAATTTA-ACATATTATTACA-TGATAAGGCAATTAA
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  GGTACTTTTGTGTTATAATCTAAAAA-----TATAA--AA-TAAAATTTAGAGGAAAAATAGGA-TTTAA----------
11  GGTTGGAGTAAAGGCATTTTTAACGA-----TATTG--CTTTTTATCGAAATACTTGCTACTAT-TTCTGGAAGACTTGT
12  AG--GCAAATCGTGGTAAAATAAAAGATGTGTATAATGAACTGAAAATGAGGAATAAAATATACTACATATGG---AAAG

  
0  CATGTTGCAGCGATGAACAAA____AGAGCAGT_CGTTTATGCTGCTCTTTTCTATTCGTATGTTCAGGATGATACGAGG
1  TATCGATTAATGTATAATCGC----CCGCCGCT-TCATCGGCAAAACGATGAACGGAAACATTTTCATTTTACATTGTTG
2  --------------------------------------------------------------------------------
3  CACAATTTTCGCCGCTATCCG----CAATCATA-TGATAAGTTACCGGTATCATCTAATAAAGGAGCGATTTGT------
4  TTGGCTTTTGCCATACACCGA----AGAAGTAA-ATCTTTCAGGTATCTATTTAATTAGAGATGACCGCTATTGGATGAA
5  GAACCCTCAATGTTTCACGTG----AAACATTG-AGGGTTTTACACCCAATTAAGAAAAAATGAATTAAACCAAAACTTC
6  GAAAGTGTTAATATTTAAGGG----CTTAGCTT-AAGGTTATTGACAATTACTTTAATAATCTTTATAGTTAACTGTGTG
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  CGTTATCAGGTGATAGGCTTA----TAATCAAG-ATGAAATAGCTTAAATTAATTGTCGTGAGGAGTGGAGCTGC-----
12  -ATGTA-CATAATTGAAAAGATGTATGAGCAGCACGAGTGTG--GCTGTTTTTCTTTCACAAGTTAACGTTGATGGGAGG

  
0  TGACTAA_________________________________________________________________________
1  GTAAGAGTGTTTTCCTGTTGGAGAAGACTCGATTTGGGTTCCCTCGCCCCCAAACCAAACTAAAAAGGTATCGC------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  CCCTTGGAGAGACTCTTAAAGAGCACCGAAGGAGAAAGCATAAAAAAAGCGAAACTCTCAGGTAAAAGGACAGGGGACAG
5  TTAATCGCAGGGGTTAAGGTAAGTTCAGCTAATCAATGAAACTTCCCCTTTCAGCCCGTTGAAGAACCAATGAGCCCTGC
6  AAATTATGTTTATAATTATAGATATTAAAAGGTATTTTATTATCTAAAGATAGATTTTTCTAAAATGGAGATGAACA---
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  ATTTTGG-------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  ATAAAATATCTTACACAAGTAATATGATAAATTACTTCAATTCATATCTTATCTATTCCCATTTGTGTCTCCAATCATAA
5  CCGCACCCAGCCCCGAGCGGCTTTCCTAAGGAAGCTCCGACCCATCACATGTAGCCTTTCC-------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  _____________________________________________________________
1  -------------------------------------------------------------
2  -------------------------------------------------------------
3  -------------------------------------------------------------
4  AATATTTATAGCGAAGAAGGCATTTTTGATACATGCCTCTCGACTAAGATGGAGGGATAAA
5  -------------------------------------------------------------
6  -------------------------------------------------------------
7  -------------------------------------------------------------
8  -------------------------------------------------------------
9  -------------------------------------------------------------
10  -------------------------------------------------------------
11  -------------------------------------------------------------
12  -------------------------------------------------------------

Complementary Intergenic Regions

IGR  +  4165797  4166317  ()  8  cotF