BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (- 4103394 to 4103649) circular

Islands  G.A.....C.C.C.CC.C.GAA..AA.C.GGAA.AG.A.AC...G,,,,,CA.G.ACA.GCAA.A.GG.A.GG.GA.,,,
5'-   GTATTTTTCTCTCTCCTCTGAATTAATCTGGAATAGTATACTTTGAAAAACATGTACATGCAATATGGTATGGTGATAAA
           |         |         |         |         |         |         |         |
           4103640   4103630   4103620   4103610   4103600   4103590   4103580   4
           |         |         |         |         |         |         |         |
3'-   CATAAAAAGAGAGAGGAGACTTAATTAGACCTTATCATATGAAACTTTTTGTACATGTACGTTATACCATACCACTATTT
Islands  CA.,,,,,GAGAGAGGAGAC..AA..AGACC..A.CA.A.G,,,C.....G.ACA.G.ACG..A.ACCA.ACCAC.A...

  
Islands  ,.CC.GA.A..ACAG,,,,,.GAG.C....A.CC...G......AC.A.A.,,,.A.AC.AG,,,GAAGCA.AGCA...G
5'-   ATCCTGATATTACAGAAAAATGAGTCTTTTATCCTTTGTTTTTTACTATATAAATATACTAGAAAGAAGCATAGCATTTG
           |         |         |         |         |         |         |         |
  103570   4103560   4103550   4103540   4103530   4103520   4103510   4103500   4
           |         |         |         |         |         |         |         |
3'-   TAGGACTATAATGTCTTTTTACTCAGAAAATAGGAAACAAAAAATGATATATTTATATGATCTTTCTTCGTATCGTAAAC
Islands  .AGGAC.A.AA.G.C.....AC.CAG,,,,.AGG,,,C,,,,,,.GA.A.A...A.A.GA.C...C..CG.A.CG.,,,C

  
Islands  .G.A.G.A..C.GGAA......,,,,,.A.AA.GAA.A.AACA..CAAC..AC..A.AA.,,,,,,GG..AA.A...C.A
5'-   TGTATGTATTCTGGAATTTTTTAAAAATATAATGAATATAACATTCAACTTACTTATAATAAAAAAGGTTAATATTTCTA
           |         |         |         |         |         |         |         |
  103490   4103480   4103470   4103460   4103450   4103440   4103430   4103420   4
           |         |         |         |         |         |         |         |
3'-   ACATACATAAGACCTTAAAAAATTTTTATATTACTTATATTGTAAGTTGAATGAATATTATTTTTTCCAATTATAAAGAT
Islands  ACA.ACA.AAGACC..,,,,,,.....A.A..AC..A.A..G.AAG..GAA.GAA.A..A......CCAA..A.,,,GA.

  
Islands  ..,,,GGAGGAG...G
5'-   TTAAAGGAGGAGTTTG
           |      
  103410   4103400   
           |      
3'-   AATTTCCTCCTCAAAC
Islands  AA...CC.CC.C,,,C

IGR  -   4103394  4103649  ()  13  yxaJ

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 - 4103394 4103649 yxaJ [-]
1 Oceanobacillus iheyensis B/C NC_004193.1 - 3058171 3058504 OB2950 [COG0006]
2 Methanosarcina mazei strain Goe1 A NC_003901.1 + 917652 918227 MM0769 [COG4186]
3 Haemophilus influenzae Rd P-g NC_000907.1 + 891471 891667 HI0842 HI0843 [COG0402 -]
4 Mycoplasma genitalium B/C NC_000908.1 + 531480 531667 deaD rpL28 [COG0513 COG0227]
5 Lactococcus lactis subsp. lactis B/C NC_002662.1 + 228069 228233 yccJ [COG0799]
6 Thermoplasma acidophilum A NC_002578.1 + 754051 754206 Ta0710 [COG0463]
7 Staphylococcus aureus subsp. aureus N315 B/C NC_002745.1 - 2645675 2646186 SA2354 [COG1835]
8 Rickettsia conorii Malish 7 P-a NC_003103.1 - 622479 623129 trxB2 [COG0492]
9 Yersinia pestis strain CO92 P-g NC_003143.1 + 3400412 3400699 YPO3045 [-]
10 Bacillus halodurans B/C NC_002570.1 + 750879 751086 apr [COG1404]
11 Borrelia burgdorferi plasmid lp17 Sp NC_001849.1 - 16122 16211 BBD24 [-]
12 Methanobacterium thermoautotrophicum str. Delta H A NC_000916.1 + 1536625 1536744 MTH1677 MTH1678 MTH1679 [COG2443 COG0250 COG0080]

0  ________________________________________________________________________________
1  TGAAACAAAGATGAAGAGGTTGGGACAAAATATTTTGTCTCAATCTTTTTTTATCTACTTGTAAAACGGCGGTAATACCA
2  CACAGACATAACAATTTTTCCTTATTTTTTGGATAAATTCAAAAAATATGGTAAATTTAAGAGAAAAAACAGAATGAGAC
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  TTCGATGCAATGAATAATTGGTATGACAATCTTAGTAATATTCATTTTAAAAGTGACACATAGCGTTTAAATATAAA---
8  GACGGTAAAACCATCGCACTAACAAGGAAAAAAGCATTAGCGGAGGAGGCAAAACTATTGCCCGTACTTATAGTTAAGAT
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  TCACTTAAAGACAATGAA--------------------------------------------------------------
2  GATTTCCCAGTTTCCCACCGTTATTTCAACTGGAAAAAATAAAATAAATTTGGAGTTAAAAGAAGGAAAATTGAGTCTTA
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  AATA----------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  AATTATAAATTGAGGCTTATTTCTAATTTTTTTGATTTACTTTGTCCCTGAGACTGACAAGGTCCAGGTTCAAATCCCTC
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  CCGAGGCTCTTTTCTTTTTTTATTTCATACATTTTAAAGTCTATTTTTAATGAAATAATTGAAAAAACCAGCTGAACTTA
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  _______________________GTATTTTTCTCTCTCCTCTGAATTAATCTGGAATAGTATACTTTGAAAAACATGTAC
1  -----------------------GGTAGCAAAAAATAAGTGGTAGGAACAACGAGAACCTCTATGTTAAGAAAATTCCAC
2  AAAAATAAACTTATATTTAGAGTTGAGAACACAATAGAATTAAAAAAATCCTGTTAATAAAAATATGATTTTTATCCGAC
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  -----------------------GGCTGACGTGATATATCGCTTGGTTTAAATTAGAGGATAGGCTGCATTTCGCTTTAT
8  -----------------------AAACCGATAATATTTCGTAGAATCTTAATTTTCATAATTTATTATAAAAATAATTAA
9  -----------------------------------------------------------------AACTCGCCACAAAAT
10  -----------------------------------------------------------------------AAGATTAGG
11  --------------------------------------------------------------------------------
12  -----------------------------------------------------TATTCTTCCACACACCCCCACTCAAGG

  
0  ATGCAATATGGTATGGTGATAAAATCCTGATA_____TTACAGAAAAATGAGTCTTTT___ATCC___TTT_GT_TTTTT
1  TGGATATACG-TATG-TGTTAAATTACCCTT------TGCGATAAAAACGCTTATCATCAAATCAGTATTA-TT-TTTAA
2  CCCGGTTTTTGAATTACAGCTCTATAGGGATT-----AATTTGCATTCATTCCATCCA---CTAA---CAG-AA-TTCTG
3  -----------------------TCTATAAGT-----GCACAAAAGAATGGATTTTTT---GCCC---TTAAGTCTTTAT
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------CATATGAAAAACCGAATG-----TAGTCCTTTATTTAAACTTTT---ATCC---TTT-GT-TTCTG
7  TTTCAATAC---ATGGTAATTTATTCATTATAGAAATTTTGAAAAAGTAAATTCGAAT---AGCA---TAT-CT-TAATG
8  TTTCTATTATTAATCTTTTACAAAGTTTAACG-----ATTTTACAAGGCTAGTTTAAG---AAAT---GGT-TA-TATTT
9  AAACCAATAAATATAACAATCGCGCAATACTC-----ACCCTAGGGCGTCCCCGCCCT---ACTT---TCT-GG-CTATT
10  TTTAAGTGGGGCGACTGAATGAGTCGCTCCAT-----TTTTATGTTCATGA-TCTCTC---ATTC---TAT-CA-TTC--
11  --------------------------------------------------------------------------------
12  AAAACCTTTATAAATCTTGAAGGATAGATTAC-----TCCATCACTCATCCCAATCCT---AGCC---CTT-GT-TTTTT

  
0  A_CTATA___TA_AATATACT_AGAAAGAAGCATAGCATTTG_TGTATGTATT_CTGGAA______TTTTTTA____AAA
1  A-CTGAC---TACAAACTTCT-AAAAACTTTCATACAAAATGGTGAATATCAT-TTTAAA------TATTTTG----AAA
2  G-CTTAT---GT-ACAGTTTT-GACAAAACAGTTCAAGTTTG-TATATTTATT-CTGGAA------TTTATTA----TGA
3  A-CTCACGCCTC-AGTTTA---AGACTGAAAAATGTTATTAA-TGAA---AAT-CCGTGA------GTTTTTC----ATA
4  --TAATT---AA-TAAACACG-TTGAATTATAACAAAATTAG-AAAACGGCTC-ATTGCC------AAGGTTA----GAA
5  --------------------------------------------------------------------------------
6  T-CTAAA---TA-AACTAATA-TTTCAGTACCTGATAAATTG-ATAATGGGAT-TTATAG------GATATGA----GCT
7  A-TTCTG---T------TAC--AGTAAGATGCATAAAATATA-AA-ACGAACC-TTT---------TTTTGTA----AAA
8  A-AATAT---GA-ATTGATGA-TATTTGCCTCACAGAATTTG-TTTTGGTTTTTCTTTAAATTTTATTTTTTACATTAAA
9  T-TATTG---TT-CTTTCATC-TCAGCATCATAATATAAAGA-AATATCCTAC-AAAAAA------TGCAGGT----GAG
10  A-CTTTA---AA-AAATTAATTAAAAATTTTCTTATAATTTA-AA-----ATA-CGACAA------AATTCGA----CCG
11  ----------------TTATA-TAAATGCTACAGAACTATCG-ATAAACAAAA-ATGGAA------TTTTTTA----AAA
12  AACTATA---TA-AATAGCGG-GGATAAACC-------------------------------------------------

  
0  ATA_TAATGAA______TATAACATT_____CAACTTACTTATAATAAAAAAGGTTAATATT_TCTATTAAAGGAGGAGT
1  ATA-TAATGAA------T-TAACAAT-----CAAAAAAATAAGAAGGTGGTGTTTGAC----------------------
2  A-A-TCTTTAT------T-TATAATT-----AAAAATCATTATATATCTGGTGATCTCTGT-------------------
3  ACA-TTATCAT------AATGCTTCT-----CGCCGTACTTACAGTACCTTTCAATTAATAT-ACATTCTCGTCTTTTTA
4  GTAATAAATTC------TCCTACTTA-----CTTATTACTTATAATAAATATAGTTTTTATT-TTTATTAATAAATTCTC
5  AAA-TAATGAA------TATAACAGG-----CAACTTTTGGTTGCTGTAACTTTTTATGTTA-AAATAAGTGGGTCTAGT
6  GAT-CAGTTTC------TTCCTCGAT-----TATATATCGCACCTAAATTATA---------------------------
7  ATA-TAATGAA------AATAACAGT-----TATTTTGCTAAAAATTCAAGAATCTATGATAATCTATGTTATGTAGTAA
8  ATA-TAATGAA------TATAACC-------CAAATTAGCTATAAATAGATTCTTTATGTAG-AAAAATTACAAACAGAT
9  TCT-GATTATC------TTCCCCTCA-----AAATCAACTTATAATAAATAAGGTTAATTCC-AATGATAAACGTGAGTG
10  ATA-TAATGAACGTGGCTAATACATTGTGTAACACTCACTGTCAATCACAGTGGTT-------TCTATAAAAGGAGGAGT
11  ATT-GAGATAG------ACTAAAATT-----GAAGGAGAATTAAAATTTTT-----------------------------
12  --------------------------------------------------------------------------------

  
0  TTG_____________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  TCCTTTCTTTTTTACGGAGTTTGT--------------------------------------------------------
4  TCGATATTTTCGATATTTAAATCTATACATCTAAACAAATTAACAAAGCCATTTAACTT---------------------
5  TTTTACATTTGATTGTAAAGAAGCTAGAGAAAATGAATAATAAATCTTAAAAAGATTTTTAATGAATAAAAAGAGGCAAA
6  --------------------------------------------------------------------------------
7  AATCGACAAATTTATATGTGGTTTGCAGTAATGAAATTAACTGTAATAATTGTTTTCTACTTAATAAAAAATTTAAAACT
8  AAAGAATCTATTATAATTACCAAAAGCGATAGGGAAGTAGCACAAATATTACCTATAAATACTAAAAAATCTCATTATTC
9  GGAGTTGAGAGAATTAAATTTTTATTCCGAATTTACTTATCGAAACACGTTAATGCTTTAGGAGCGATTAATTTATA---
10  TTCTA---------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  AAGTCTCGGAGGAAAGAA--------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  ATCTTAATTAAGGGTTAAATCAATTAATGAAAATCAGTGCAATATTTTATTTTCAAAAATATTGTGATATGCTACAAAAT
8  GGTATGCTACAAAACAAAGCCGAGATAAAAGCGGATATATTAGAACCCGTAGAAGAAAAGTGGAATGCAGCACAACCTTT
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  AGAGAAAAATAAATGGGGCGTTTATTAAC---------------------------------------------------
8  AAATGCATCTCGTCTAGTATAATATCCGACAGTTTTTAAAAATCCCCCTGCGAAAGTGTTGGATTTCTATAAATATACTC
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  _________________________________________________________________
1  -----------------------------------------------------------------
2  -----------------------------------------------------------------
3  -----------------------------------------------------------------
4  -----------------------------------------------------------------
5  -----------------------------------------------------------------
6  -----------------------------------------------------------------
7  -----------------------------------------------------------------
8  ACATAACCATTGATTATTTTCTCAATATCCAATAAAATCCTTTGTAAAATTTAAATATAAAAAGT
9  -----------------------------------------------------------------
10  -----------------------------------------------------------------
11  -----------------------------------------------------------------
12  -----------------------------------------------------------------

Complementary Intergenic Regions

IGR  +  4103394  4103649  ()  9  yxaI