BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (+ 4065795 to 4065971) circular

Islands  A.....C.CC.CC.A...ACC.A.AA.AA.CGA..AGGCACACCGCG.CACCCA.,,,CGGG,,,,,C...C.CCC..,,
5'-   ATTTTTCTCCTCCTATTTACCTATAATAATCGATTAGGCACACCGCGTCACCCATAAACGGGAAAAACTTTCTCCCTTAA
       |         |         |         |         |         |         |         |    
       4065800   4065810   4065820   4065830   4065840   4065850   4065860   40658
       |         |         |         |         |         |         |         |    
3'-   TAAAAAGAGGAGGATAAATGGATATTATTAGCTAATCCGTGTGGCGCAGTGGGTATTTGCCCTTTTTGAAAGAGGGAATT
Islands  .,,,,,GAGGAGGA.,,,.GGA.A..A..AGC.AA.CCG.G.GGCGCAG.GGG.A...GCCC.....G,,,GAGGGAA..
Term (1.91)%  -----------------------------------------------------------CCCTTTTTGAAAGAGGG----

  
Islands  ,,,.AG.GA.AGACGGAGAACAGG...C..GC.A.A..A..AA..GA.AA.GA.AA.CA..AC.AA.C.A..GAGA.ACA
5'-   AAATAGTGATAGACGGAGAACAGGTTTCTTGCTATATTATTAATTGATAATGATAATCATTACTAATCTATTGAGATACA
       |         |         |         |         |         |         |         |    
  70   4065880   4065890   4065900   4065910   4065920   4065930   4065940   40659
       |         |         |         |         |         |         |         |    
3'-   TTTATCACTATCTGCCTCTTGTCCAAAGAACGATATAATAATTAACTATTACTATTAGTAATGATTAGATAACTCTATGT
Islands  ...A.CAC.A.C.GCC.C..G.CC,,,GAACGA.A.AA.AA..AAC.A..AC.A..AG.AA.GA..AGA.AAC.C.A.G.

  
Islands  .AG.GGGAGGG..C..G
5'-   TAGTGGGAGGGTTCTTG
       |         | 
  50   4065960   4065970   
       |         | 
3'-   ATCACCCTCCCAAGAAC
Islands  A.CACCC.CCCAAGAAC

IGR  +  4065795  4065971  ()  21  yxeB

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 + 4065795 4065971 yxeB [COG0614]
1 Staphylococcus epidermidis ATCC 12228 B/C NC_004461.1 - 1831172 1831273 SE1771 SE1770 SE1769 [COG0477 COG4264 COG3457]
2 Oceanobacillus iheyensis B/C NC_004193.1 + 574964 575176 OB0542 [COG4607]
3 Oceanobacillus iheyensis B/C NC_004193.1 - 3528921 3529098 OB3390 [COG0614]
4 Listeria innocua Clip11262 B/C NC_003212.1 - 395066 395138 lin0381 lin0380 [COG1826 COG0805]
5 Listeria innocua Clip11262 B/C NC_003212.1 + 396810 396937 lin0384 lin0385 lin0386 [COG0672 COG2822 COG2837]
6 Listeria monocytogenes strain EGD B/C NC_003210.1 + 391474 391603 lmo0365 [COG0672]
7 Oceanobacillus iheyensis B/C NC_004193.1 + 999940 1000557 dhbA dhbC dhbE dhbB dhbF OB0959 OB0960 OB0961 [COG1028 COG1169 COG1021 COG1535|COG3433 COG1020|COG3319 COG3251 COG0477 COG2091]
8 Staphylococcus aureus subsp. aureus N315 B/C NC_002745.1 + 1107828 1108035 SA0978 SA0979 SA0980 [- - COG0614]
9 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 - 1130745 1130949 CAC0982 [-]
10 Salmonella typhimurium LT2 P-g NC_003197.1 - 1425242 1425397 ydiE [-]
11 Listeria monocytogenes strain EGD B/C NC_003210.1 - 389718 389812 lmo0362 lmo0361 [COG1826 COG0805]
12 Oceanobacillus iheyensis B/C NC_004193.1 + 291820 292187 OB0259 OB0260 OB0261 OB0262 [COG0614 COG0609 COG0609 COG1120]
13 Staphylococcus aureus subsp. aureus N315 B/C NC_002745.1 - 2624431 2624645 SA2338 feoB SAS088 [- COG0370 -]
14 Staphylococcus epidermidis ATCC 12228 B/C NC_004461.1 - 2158921 2159214 SE2115 SE2114 SE2113 [COG1918 COG0370 -]
15 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 - 3621845 3622061 CAC3432 [COG0596]
16 Bacillus halodurans B/C NC_002570.1 + 1516314 1516984 BH1428 BH1429 [COG0492 COG0492]
17 Bacillus subtilis B/C NC_000964.1 + 431568 431951 yclN yclO yclP yclQ [COG4606 COG4605 COG4604 COG4607]
18 Bacillus subtilis B/C NC_000964.1 - 3291354 3291546 dhbA dhbC dhbE dhbB dhbF [COG1028 COG1169 COG1021 COG1535|COG3433 COG1020]
19 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 + 1746684 1746818 CAC1602 [COG4378]
20 Staphylococcus aureus subsp. aureus N315 B/C NC_002745.1 + 786643 787016 SA0688 SA0689 SA0690 [COG4606 COG4605 COG4604]

0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  AACATCGTACCTAGAGATAAGTATTTAAGATTGAG---------------------------------------------
3  TCTTTT--------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  ATAGAAAATATACGTAGAGCATTCTCATTTTGATGAGGGTGCTTTTTTGATAGTTAAGAAGCATTTGTAGGAAGAAATTT
8  GTTGTTTTCCT---------------------------------------------------------------------
9  ATAAATTCCCCCTTCGAATTTATGTA------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  TCTGTTCGTTAACGTATACGAGGCAATTGTTTTCACCATGGATTTACTGAAAATACTTAATTTAATCTTATGGGGAATAA
13  AATAACATGTACATGCCTCCGCTTTAAATGTCTATCAATGACATTTGAAGCG----------------------------
14  TTTATATATAACATGTCGTTGTAATGTGCGTGAATGAGGGAGATGACTTATAGCCACTTTACAACGACTTTTTAGTTTGG
15  TTTTGCCACGAAAAATCCCCCCCCCAAGATAATATT--------------------------------------------
16  AAAAATCGCCTTCTTTCGTTTGAATTTTGGTAGTGGTACCTTCATTTTAAACGATTGGGCGATTTTTTTGTATGTTCTTT
17  GTTTACATCTCCTAATGTTTAAAATTTTCACACAAATTTAGTATTTATTATCTCTCTTTCAGTACTGTAAATCAAGGGGG
18  --------------------------------------------------------------------------------
19  --------------------------------------------------------------------------------
20  CAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTT

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  TACACCTAAATTAGTAGAACACACTCGTGATGGTTCTTAACAGACGCTTGTGCTTTTTCTCAAATTAGCAGATGGCTAAA
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  GATGTCACAGCGGACAGTTGGCATATTACTGTTTGATGAAGTTCAATATGGGTTTGGCTGAAACTCTATTAGAGTAA---
13  --------------------------------------------------------------------------------
14  AAAGGAAATAATTATTGCAATTGATAGAAGAACGTTTATTCATATCGTT-------------------------------
15  --------------------------------------------------------------------------------
16  CGCGCGTTAATGGGAGTCAAACGAGCGACAGGCGGCGACTCCTGCGGGAAAAGCAACAGCGGAAGATCGCCGAGAGTGGG
17  AATTTCTTTCTCAGGAGAACATTTGTATTTTTCACGAGGAATAATGTTAGGTTTGCTGACCGTATGCCTGCGTTATAAAG
18  --------------------------------------------------------------------------------
19  --------------------------------------------------------------------------------
20  CTCTATGCTTAAAAGCGTATGCATATTTTGAAAAAGTAAAAATTGTATTTAATGATGTCAATGAGGCTAGAAAGTATACA

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  GGATTATTTTATCGAATCTATACAAAAAATGTAGGAATTTAGAAGGAAACGAAAATAGCATGGAAAAAATTATCTTTATT
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  GTTCTCGAGGAAGCTGGAGCGTTGCCCGCGGAAAGCGTCCGCCAAGTCGCCATTTCGAACGAATAAGCAAAGGAGCTGCC
17  ATA-----------------------------------------------------------------------------
18  --------------------------------------------------------------------------------
19  --------------------------------------------------------------------------------
20  AGATATTGCATTACAAAAGGGTGTTCTATTTTACTTTAAGCAAACAAAAT------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  TCCATGCTGATTTTTTAGTTATTAGGTGAAAATCGCACTATATCAACACTTAAACTGTATAGTTGGTTCTCATTTCCTTA
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  TCAAAAGATAGACTTTTGAGACAGCTCCGATTTTTGTGTTGATTTGTGTTCTTTGGTTCCTTCGAGCGACAGGCGGAAAC
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------
19  --------------------------------------------------------------------------------
20  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  AATTAAACTCAATGATAATTATTTTGGATGGTAATAACTGTATTTTAGAGATAAGTAAC---------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  TCCTGCGGGAAAAGCAACAGCGAAAGATCGCCGAGAGTGGGGTTCTCGAGGAAGCTGGAGCTTGCCCGAGGAAAGCGTCC
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------
19  --------------------------------------------------------------------------------
20  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  GCCAAGTCGTCATTTTGAACGAATAAGTAAAGAAGTTGCCTCAAAAGATAGACTTTTGAGACAGCTCCTCATTTTTTTAT
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------
19  --------------------------------------------------------------------------------
20  --------------------------------------------------------------------------------

  
0  ____________________ATTTTTCTCCTCC_TATTTACC_TAT_AATAATCGATTAGGCACACCGCGTCACCCATAA
1  --------------------------------------------------------------------------------
2  --------------------CTTTTCTCTAGGT-TTTTTATA-AGT-CAATAAATAATAATTGTGACAAAAAGTTAAAAT
3  --------------------CCCTCCTCAGAGA-AGCAGCTT-GGT-AATTATATTTTTCAAAAATCAGATTTCTATCCT
4  --------------------------------------------------------------------------------
5  ----------------------------------------------------------------AAAACTTCGATTTCAT
6  --------------------------------------------------------------AAAAAACTTCGATTCCAT
7  --------------------TGTTATAGACCGG-TATATCAA-CCT-TCAGGAAGTTATGATGAGCATAATATATTGTAT
8  --------------------CCTAAGGATACAA-ATTATGTG-TTG-TTATATGAGATGATTAACCATTGCAATTGATAA
9  --------------------TAGTTACCTATCT-CATATGTA-TTA-TATCATAATTCAACATAAATATTAACATCAATT
10  ------------------------------TAG-CTCGCCCA-TCC-TGCCGGGATGGGCGTTTCTTCGATGCGTTACCC
11  --------------------------------------------------------------------------------
12  --------------------TCTTTGTTATTAC-TTTAATGG-AGT-TTTTTTGATATGCCGAATTTACTACTTTTTGAG
13  --------------------GAGGTTTTTTGCA-TGGAAGTG-ATT-ATACAAAACATTTTTGCAATGTCGCAAATTTTA
14  --------------------AATATTTTCATCAATATTAACGATATGAATAAACGTTTAAA-ATAATGTATTGTTCACAA
15  --------------------CTTAATAATTATA-CTATAAAA-GGA-TAGTTATTAGCAGTCAATATGTATTAAAAAGCA
16  GGTGTTGTTATAAGATTCAGCACAGGCCGATGT-CCACTTTT-AAG-ATGTCCTCCTCGTCACCATTCGGTATTTTTGCG
17  --------------------AATATGGTAAACA-GCCTAACG-TTT-TGGGATGGAAAATGGTTAGAATGATTAGTAAAA
18  ---------------------------------------------------------GACATACTCAGCCTTGCCTTTAA
19  ----------------------------------------------------TAAAGTCCTTATTAAAAGAGACAATGGT
20  --------------------ACACATTCCGAAA-AATTAAAT-TTC-AGTTTAATTGCAAATATCAATAAAATTGACACT

  
0  ACGGGAAAAACTTTCTCC_CTTAAAA_ATAGT_G_A_TAGACGGA___GAACAGGT__TT___CT_TGCT_AT_ATT_AT
1  ----------AATTCACCTCTAAAAA-ATATT-TTA-CAAAAATA---AATAACAT--TT---GTATAAT-CC-AT--AT
2  AATATTACAAAGAAGTAA-TAATTAT-ATTGA-C-G-GGAGTTCT---AAAGGCGA--TT---AT-ACTA-AG-TGT-AG
3  TCCTTCTAAAGCTACCTA-ATTAAAA-ATACT-----TTGACA-A---GTTTAAGA--TT---GT--GAA-GT-AGT-GT
4  -----------------------------------------CATC---CAGTAGGT--TT---C---GAT-TT-AGA-AT
5  TATCGGAGTTTTTTTATT-TGGATGA-AAACA-T-G-AAAAAATT---TATTGACT--TT---TT-TGA--AC-ATG-GA
6  TATCGGAGTTTTTTTATT-TGGGTGA-AAACA-T-T-AAAAAATT---TATTGACT--TT---TT-TGAA-CT-TGG-AG
7  GTATCCTAAATAATATAG-GCTTTTT-TACCT-T-G-TTGACGGATAGGTTCATGT--AT---TC-TAAA-GT-ATTCAG
8  TGGTTATCAATTATACTA-GCACATC-TATTT-C-C-GTATAACA---ATAATAAA--TT---GA-TTAT-AA-AAT-AA
9  ATAAAAACTCTTGTTTTT-GTTGAGT-AGCCG-C-C-AGTTGACA---TCAATCTG--AT---TA-AATG-AT-ACT-AT
10  GCCCTTTTCTCTCCGCGC-GCGTATA-TCACT-C-C-GCAGAATT---AGCACTTG--CT---GT-TATC-GC-ATT-AA
11  --------------CGTT-AATAGAA-AAACA-G-A-TTGACATC---CGATAGGT--TT---C---GAT-TT-AGA-AT
12  GTAGGTTAATAGTAATAG-ATAATAT-ATTTT-G-A-TTATTGAC---AACATCAT--AG---GA-TTAA-AG-TAT-AT
13  CATGAAAAATGAAAATTA-TTTAAAT-AAAGT---A-TTG-CGAG---CTACAATT--TT---AA-GGGTTATGATT-TT
14  A----AAAGACATACATC-CTGTTAA-TTGGT-T-A-TTGTAAAA---AAGTAGTT--TAAGGCA-TATT-CT-GTT-GT
15  GGTTATCGTACATTTTTA-ATGTGGT-ATGTA-T-G-ATAACCTA---CAAAACCA--TA---TA-AATC-AT-CTA-TT
16  CAAATCTTATCTTTTGCG-GCAGAAA-CGTTT-T-G-AGTTGCTA---GCCGTAAA--AA---AA-TCAG-TT-ACA-AT
17  TTGATAAATGACTAGGTT-AATATTT-TTAAA-G-A-ATATTGAC---TAACCCTA--TA---AA-AATG-GT-AAT-AT
18  A----AAAATATTTGTCA-CTGAAATTATATTTG-A-CTGTCACA---TGACATTTGGAT---AT-GATT-AT-TTT-TA
19  CTAATAATAGTATTGTCT-CTTTTAA-ATT-T-G-ACTTAATAGA---GGAAATGT--TA------TAAA-AT-CTT-AT
20  AAATTATTTGAAAGGCTA-TTGAAAT-TATGG-T-C-AAAAAACG---CTACTATT--AA---TG-AGAA-AT-ATT-AT

  
0  _T_AAT_TGATAATGATAATCA_TT____ACTA__ATCTATTGAG__A__TACATAGTGGGA_GGGTTCTTG________
1  -T-AAT--GATAATGATAATTA-TT----ATCA--ATGAAAAAGA--C--AGGTGGAATTTG------------------
2  -T-TAT-TGATAATGATTATCA-TT----ATCA--ATAAAATAAT--ACATACATAGAGGAG-AGAAGTAC---------
3  -T-A-T-TGATAATGATTATCA-TT----ATTA-------TTTAG--A--TGAAAAGTAGGG-GGGAATTAGGACAG---
4  -T-AGT-TGATAATGATTATCA-TTTTCAACCA--ATGAATGGAG--G--AAATCGAA----------------------
5  -G-AATATGATAATGATAATCA-TT----TTCA--AT-TAGAAAG--A--GAGGTGGTTTGT-GT---------------
6  -A-ATA-TGATAATGATAATCA-TT----TTCA--ATTAGAAAGG--A--GGATGAATGGAA-T----------------
7  -T-ATA-TGATAATGATAATCA-TT----A-TC--ATTTAAATTA--C--CAATTGATACCA-ACTAAAGCTCGTCTTTA
8  -A-TAT-TGACAATGATAATCA-TT----ATTA--TTTATGATTT--T--ACTAAAGACTTA-AAAGCAATCATAAAAAG
9  -TTAAT-TGAAAATGATATTCA-TT----GCTATTATCTATACAT--A--TTAAAAGGGAGTTGAGTTCT----------
10  -T-TAT-TGATAATAATAATCA-TT----GTGA--GTTTGATTATTAA--TAAATAGC----------------------
11  -T-AAC-TGATAATGATTATCA-TT----TTCA--TTTAAAGAAT--G--GAGGAAATCGAA------------------
12  -T-AAT-TGATAATGATTATCA-TT----ATTA--AAAAGGGTTT--A--TCGATCAAAAAT-CCTTAGACCAAAAAACT
13  -T-AAG-TGATAATGATTATTA-TT----TCTA--ATAGGA-GAG--C--GAAATAGT----------------------
14  -T-AAA-TGATAATGATAATGA-TT----ATTA--AT-TAGAGAG--T--GTGAACAAT---------------------
15  -T-AAG-TGATAATGATAATCA-TT----TGTA--CTTGACGTAT--A--AGATTTAAGAAG-TAAGGAGTGGTTT----
16  -T-AAT-TGATAATGATAATCA-AT----A-TC--ATCGTTTGTT--A--AAAGGGGCGAAA-GAGG-------------
17  GT-AAA-TGATAATGATAATCAATT----ACTA--TATGGCCATA--T--TGTTTTGAGTCC-TTGCGGAGTAGGAGATA
18  -T-AAT-TGATAATGATAATCA-TT----ATCA--ATAGATTGCG--T--TTTTCAAGGCGC-AGCAGTCTTTTTCGCTG
19  -T-AAA-TGATATTGATAATCA-TA----A-TC--ATTTAATAAG--G--AGGAGAGTTTA-------------------
20  -C-AAT--GATAATGATTATCA-TT----AATT---TAAAGGGAG--A--AAAATTTGTA--------------------

  
0  ___________________________________________________
1  ---------------------------------------------------
2  ---------------------------------------------------
3  ---------------------------------------------------
4  ---------------------------------------------------
5  ---------------------------------------------------
6  ---------------------------------------------------
7  TTTTTTTATATCTCATTGAGAATGATTATCAATTGAAGGAGGTATGGTGAA
8  GAGGATTATGTT---------------------------------------
9  ---------------------------------------------------
10  ---------------------------------------------------
11  ---------------------------------------------------
12  AAATAATAGATAGGAAGGGTTTACAT-------------------------
13  ---------------------------------------------------
14  ---------------------------------------------------
15  ---------------------------------------------------
16  ---------------------------------------------------
17  CGTTCTTTTTGCTGTAAGGATGTAAGGAGGCAGC-----------------
18  GATGTCTGTTTGGCATTTAGAGCGAAGAAAGGAATTGATGAT---------
19  ---------------------------------------------------
20  ---------------------------------------------------

Complementary Intergenic Regions

IGR  -   4065795  4065971  ()  17  yxeC