BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (+ 4003926 to 4004540) circular

Islands  GA.,,,,,,CACCCCA..CA..CA.....AGA.,,,.G,,,,,GGCA.AGAC,,,.,,,CC.AGGCC.A.C.C,,,,,..
5'-   GATAAAAAACACCCCATTCATTCATTTTTAGATAAATGAAAAAGGCATAGACAAATAAACCTAGGCCTATCTCAAAAATT
      |         |         |         |         |         |         |         |     
      4003930   4003940   4003950   4003960   4003970   4003980   4003990   400400
      |         |         |         |         |         |         |         |     
3'-   CTATTTTTTGTGGGGTAAGTAAGTAAAAATCTATTTACTTTTTCCGTATCTGTTTATTTGGATCCGGATAGAGTTTTTAA
Islands  C.A......G.GGGG.AAG.AAG.,,,,,.C.A...AC.....CCG.A.C.G...A...GGA.CCGGA.AGAG.....AA

  
Islands  GGCCAGG.C.GGCAG...G.C.ACACC.G.CA..A.C.A.AACGAA.GAA..GGA.AA.CA.G,,,,,,,C.CCC...C.
5'-   GGCCAGGTCTGGCAGTTTGTCTACACCTGTCATTATCTATAACGAATGAATTGGATAATCATGAAAAAAACTCCCTTTCT
      |         |         |         |         |         |         |         |     
  0   4004010   4004020   4004030   4004040   4004050   4004060   4004070   400408
      |         |         |         |         |         |         |         |     
3'-   CCGGTCCAGACCGTCAAACAGATGTGGACAGTAATAGATATTGCTTACTTAACCTATTAGTACTTTTTTTGAGGGAAAGA
Islands  CCGG.CCAGACCG.C,,,CAGA.G.GGACAG.AA.AGA.A..GC..AC..AACC.A..AG.AC.......GAGGG,,,GA

  
Islands  GC.G.A.GGG...CCCCG...CCA.CA.ACAAC,,,.A.CCAGGAGC.GGAACC..A.AG.GAAG,,,,,.CAG.AC.GA
5'-   GCTGTATGGGTTTCCCCGTTTCCATCATACAACAAATATCCAGGAGCTGGAACCTTATAGTGAAGAAAAATCAGTACTGA
      |         |         |         |         |         |         |         |     
  0   4004090   4004100   4004110   4004120   4004130   4004140   4004150   400416
      |         |         |         |         |         |         |         |     
3'-   CGACATACCCAAAGGGGCAAAGGTAGTATGTTGTTTATAGGTCCTCGACCTTGGAATATCACTTCTTTTTAGTCATGACT
Islands  CGACA.ACCC,,,GGGGC,,,GG.AG.A.G..G...A.AGG.CC.CGACC..GGAA.A.CAC..C.....AG.CA.GAC.

  
Islands  CA.GC.GG.A.CCCGCCAACA.CA.A.CAGCA.AGCAA.CCAGCA.G.....CC...A....C.CA....AGAA.A.,,,
5'-   CATGCTGGTATCCCGCCAACATCATATCAGCATAGCAATCCAGCATGTTTTTCCTTTATTTTCTCATTTTAGAATATAAA
      |         |         |         |         |         |         |         |     
  0   4004170   4004180   4004190   4004200   4004210   4004220   4004230   400424
      |         |         |         |         |         |         |         |     
3'-   GTACGACCATAGGGCGGTTGTAGTATAGTCGTATCGTTAGGTCGTACAAAAAGGAAATAAAAGAGTAAAATCTTATATTT
Islands  G.ACGACCA.AGGGCGG..G.AG.A.AG.CG.A.CG..AGG.CG.AC,,,,,GG,,,.,,,,GAG.,,,,.C..A.A...

  
Islands  ....A..A..G.G,,,,.AG..,,,,,GG..GA....C,,,,,G.G,,,GGA.,,,,.AC.GC.A.CA.C..AG,,,,,G
5'-   TTTTATTATTGTGAAAATAGTTAAAAAGGTTGATTTTCAAAAAGTGAAAGGATAAAATACTGCTATCATCTTAGAAAAAG
      |         |         |         |         |         |         |         |     
  0   4004250   4004260   4004270   4004280   4004290   4004300   4004310   400432
      |         |         |         |         |         |         |         |     
3'-   AAAATAATAACACTTTTATCAATTTTTCCAACTAAAAGTTTTTCACTTTCCTATTTTATGACGATAGTAGAATCTTTTTC
Islands  ,,,,.AA.AACAC....A.CAA.....CCAAC.,,,,G.....CAC...CC.A....A.GACGA.AG.AGAA.C.....C

  
Islands  ACA..C..G.A.A.GA.CAG.AA.A.GG.C.GA..G...C.ACC.AG.AACCG.,,,,,,C.AGAC.ACAAG,,,G...G
5'-   ACATTCTTGTATATGATCAGTAATATGGTCTGATTGTTTCTACCTAGTAACCGTAAAAAACTAGACTACAAGAAAGTTTG
      |         |         |         |         |         |         |         |     
  0   4004330   4004340   4004350   4004360   4004370   4004380   4004390   400440
      |         |         |         |         |         |         |         |     
3'-   TGTAAGAACATATACTAGTCATTATACCAGACTAACAAAGATGGATCATTGGCATTTTTTGATCTGATGTTCTTTCAAAC
Islands  .G.AAGAACA.A.AC.AG.CA..A.ACCAGAC.AAC,,,GA.GGA.CA..GGCA......GA.C.GA.G..C...C,,,C

  
Islands  AA.,,,...GAACGAG..G,,,,GGACAAG..C....C.G...GC.C..A.....CACAC...C.GCAC..CCAGAA...
5'-   AATAAATTTGAACGAGTTGAAAAGGACAAGTTCTTTTCTGTTTGCTCTTATTTTTCACACTTTCTGCACTTCCAGAATTT
      |         |         |         |         |         |         |         |     
  0   4004410   4004420   4004430   4004440   4004450   4004460   4004470   400448
      |         |         |         |         |         |         |         |     
3'-   TTATTTAAACTTGCTCAACTTTTCCTGTTCAAGAAAAGACAAACGAGAATAAAAAGTGTGAAAGACGTGAAGGTCTTAAA
Islands  ..A...,,,C..GC.CAAC....CC.G..CAAG,,,,GAC,,,CGAGAA.,,,,,G.G.G,,,GACG.GAAGG.C..,,,

  
Islands  G.GAAGGA.AAGAGC.......G...CCA.AA.AACCC.CA.AGGAG..GC.A.C
5'-   GTGAAGGATAAGAGCTTTTTTTGTTTCCATAATAACCCTCATAGGAGTTGCTATC
      |         |         |         |         |         |
  0   4004490   4004500   4004510   4004520   4004530   4004540   
      |         |         |         |         |         |
3'-   CACTTCCTATTCTCGAAAAAAACAAAGGTATTATTGGGAGTATCCTCAACGATAG
Islands  CAC..CC.A..C.CG,,,,,,,C,,,GG.A..A..GGGAG.A.CC.CAACGA.AG

IGR  +  4003926  4004540  ()  12  yxjA

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 + 4003926 4004540 yxjA [COG1972]
1 Shewanella oneidensis MR-1 P-g NC_004347.1 - 891505 891661 serA [COG0111]
2 Listeria innocua Clip11262 B/C NC_003212.1 - 2013164 2013390 lin1998 lin1997 [COG0503 COG2233]
3 Xanthomonas campestris pv. campestris str. ATCC 33913 P-g NC_003902.1 + 3413661 3414365 iroN [COG1629]
4 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 - 3016552 3016632 prfA CAC2883 CAC2882 [COG0216 - COG0009]
5 Yersinia pestis strain CO92 P-g NC_003143.1 - 2359495 2359919 minC minD minE [COG0850 COG2894 COG0851]
6 Listeria monocytogenes strain EGD B/C NC_003210.1 - 610925 611239 lmo0573 [COG2252]
7 Listeria monocytogenes strain EGD B/C NC_003210.1 - 1958741 1958967 lmo1885 lmo1884 [COG0503 COG2233]
8 Listeria innocua Clip11262 B/C NC_003212.1 - 609962 610276 lin0582 [COG2252]
9 Clostridium perfringens B/C NC_003366.1 - 512728 513401 uapC [COG2233]
10 Sulfolobus tokodaii A NC_003106.1 - 110771 110898 ST0088 [COG0697]
11 Haemophilus influenzae Rd P-g NC_000907.1 + 1376025 1376138 HI1297 HI1298 [COG1380 COG1346]

0  GATAAAAAACACCCCATTCATTCATTTTTAGATAAATGAAAAAGGCATAGACAAATAAACCTAGGCCTATCTCAAAAATT
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  ---------------------------------------------GCATTCTCCTGATAAGTGGCAGCGGGGCCGACATC
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  ------------------------------------------------------------TTTAAATTCTCCTCTCAATG
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  GGCCAGGTCTGGCAGTTTGTCTACACCTGTCATTATCTATAACGAATGAATTGGATAATCATGAAAAAAACTCCCTTTCT
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  GTCCTGCTGGCCGACGAACGGCGAGCGGGTAGACAACGTTGTCAGCAATCGTCCTGTAACGCAACCGTCGCGCGCGTACT
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  TATTTCTTACAAGCTTATTATCAAATATTAAGTAAATGTTTTCAAGGACATTTGTCCAAGACTTTCATATAGGTTTTATA
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  GCTGTATGGGTTTCCCCGTTTCCATCATACAACAAATATCCAGGAGCTGGAACCTTATAGTGAAGAAAAATCAGTACTGA
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  GCGTCGCGCGCGCGGCAAATTCCATCATCCAACAAATATCA--GCGCTGGTAATGGTGATTCCGGCACAAACTTTAGTGA
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  CTAAAAAATATACCTTTTAAACTAAAAGTATTTTTAAATTAATAAAAAATCCTTAGAAATAAGAGATAGTTCTTTTTTCT
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  CATGCTGGTATCCCGCCAACATCATATCAGCATAGCAATCCAGCATGTTTTTCCTTTATT__TTCTC_ATTTTAGAA_TA
1  -----------------------------------TGTTCCTTCCTCTTATGCGATATTG--TTCTC-ATTTTAGAA-TA
2  --------------------------------------------------------------------------------
3  TGTCGGCTTGAATTGCACATCAGCCATAGAAACGGCCGATGGCTGCACACATCGCGTGCG--GCCCA-ATTGCGCAG-CG
4  -------------------------------------CAAAGCTTTACAAATTTGATTAT--GAGAA-GTTTTATAT-GT
5  ---ATGAATGAGATTTCTCTCAAATAAATATGGTGAGGTATTTGACTAAGCCGATAAGAC--GGCTG-TCAATATCG-CT
6  -----------------------TTTTTTACCTCCAACTATTATTTGTTTTTATTATACC--TTATTTATTTAAAAG-TA
7  --------------------------------------------------------------------------------
8  -----------------------TTTTTTACCTCCAACTATTATTTGATTTTATTATACC--TTATT-TTTTTAAAAGTA
9  TATACTTATTTTAAAATTTCTTAATA-CAAAATAAAATTATTACATATACTTCCATTAAA--AA-TA-ATTTAAAAA-TA
10  -----------------------AATTGCTTATATTAAATTAGCTTATATTTTCATTTTTGATAAAC-ATTAAATAG-CT
11  --TTTGCAAAGTTTTTGATCTAAGTCTGGTTATTTTACCGAAAAAATGGCTCAAGTTAGC--AAAAA-AAAGCGTAA-AA

  
0  TAA__ATTTTAT_TATTGT___GAA_AATA_GTTAAAA___AGGT_TGATTTTCAAAAAGTGAAAGG_ATAAAATACTGC
1  TTA--ACTTTAG-CCATCT---AGC-CCTC-CACAGTG---AGCC-CAAAAAGTGCTACTTTGGTGG-ACAAAGGTTGTC
2  -------------------------------AAAATTA---GCTT-GACCCTGCTCCTTTAGAAAGCTATAATAAACAAC
3  CCG--CTGGCGT-TCCGCA---AAC-CACC-GCACAAA---AATG-CTGCATTGCAGCGCAATCGCA-GCCACTTCAGAG
4  TAT--AATTTAT-TATTGT---GAA-AATA--TAAATA---CGGAGTGATAATA--------------------------
5  ATT--TCGCCAT-CTTAAG---AAT-GATA-ACAATCA---AATA-TCATCGCCCCATTTGATAAAA-AACACCCCATTC
6  TAA--ACTTATT-TATTTA---AAA-GTTC-GTTTTTA---ATTT-TTATTTCTTACACGT--ATTG-CCAAAAATCGGC
7  -------------------------------AAAATTA---GCTT-GACCCTGCTCCTTTAGAAAGCTATAATAAACAAC
8  TAA--ACTTATT-TAT-GT---AAA-AGTTTGTTTTTT---ATTT-TTATTT-CATTCA-TGTATTG-CCAAAAATCGGC
9  AAATAAATCTAT--ATAGC---GAACAATA-T---AAA---CTAT-TGATATTTGAATTTTTCGTG--ATATAATAAGTG
10  TTA--AACTTAC-TAATTTATAGTA-AATT-TCCAAAAGTAAAGT-TATGTTTAAAAAAGTGAAAGG-ATAAAAATATCT
11  TAA--TTTTGAAATATTAT---GAA-AATA-GTTGAAA---AGGT-TGTAT-----------------------------

  
0  TA_TCATCTTAGAAAAAGACATTCTTGTATATGATCAGTAATATGGTCTGATTGTTTCTACCTAGTAACCGTAAAAAACT
1  AG-CATAGCATATAAGAACCACTTCAATTAATTAAGAGGGTACCCATATC------------------------------
2  -A-TAA-CTTA-AAACCGAAATACTTATATAATAGTTGCGAT-TGGGCGACGAGTTTCTACCTGGTTACCGTAAATAACC
3  AT-CTGTGACGATGTGTTGACAACGCTGTCAACGCTACGCGAGACTCGATTCAAATCGGAGTTCAGGCAGGAGGGGCCAT
4  --------------------------------------------------------------------------------
5  CC-TAGACAAAGACAACCCTTTGTAAAGTAAAACCAAGTGTTGAAAAAATATGCAATCATAAAATAGCGGCTGAGTCGCT
6  TAATCCGCT-ACAATAATATAGTC--GTATAAGTTCGGTAATATGGACCGTTCGTTTCTACCAGGCAACCGTAAAATGCC
7  -A-TAA-CTTA-AAACCGAAATACTTGTATAATAGTTGCGAT-TGGGCGACGAGTTTCTACCTGGTTACCGTAAATAACC
8  TAATCGTCT-ACAATAATAAAGTC--GTATAAGTTCGGTAATATGGACCGTTCGTTTCTACCAGGCAACCGTAAAATGCC
9  TA-TTAAATTTTAA---------CTCGTATATAATCGGTAATATGGTCCGAAAGTTTCTACCTGCTAACCGTAAAATAGC
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  AGACTACAAGAAAGTTTGA__ATAAATTTGAACGAGTTGAAAAG_GACAAGTTCTTTTCTGTTTGCTCTTATTTTTCACA
1  --------------------------------------------------------------------------------
2  GGACTATGAGTA-GTTTGT--ATAAAGAAGT-CACTCCGAAAATTGGTGGCTTCTATACTGCTT-CTCTAAATTTAGAGA
3  GGACTGTTTTACGACTGTA--CGGATTGGCGCGCCCCTCGCCCG-GAACATCCAGATTTGCGAGCCACGCGTCATGGGGC
4  --------------------------------------------------------------------------------
5  AAATATAGGGGGTCAAGAC--TAGCGAATAACCCAAAGTTATGC-TGTAATTTCCTATCAGTTTGGAATAATTGTG---A
6  AGGCTACGAGCTA--TTGT--A-AAATTT----------AATAG-GG--ATTTTTTTGCTATTTTTATTTATTATTCCCT
7  GGACTATGAGTA-GTTTGT--ATAAAGAAGT-CACTCCGAAAATTGGTGGCTTCTATACTGCTT-CTCT-ATTTTTAGAG
8  AGGCTACGAGCTA--TTGT--A-AAATTT----------AATAG-GG--ATTTTTTTGCTATTTTTATTTATTATTCCCT
9  AGACTACGAGGA-GTTGTACTATAAATTCTAGTAATTCTAGTTT-TTAAAGCAACACCTCTAAAAAGGTGTTGTTTTTTT
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  CTTT___CT__GCACTT_CCAGAATTTGTGA_AGGATAA_____GAG_CTTTTTTTGT_TTCCATAATAACCCTCATAGG
1  --------------------------------------------------------------------------------
2  A----------GCAGTT-TTTTTATTTTGAA-AGGAGAA-----TAT-CT------------------------------
3  GCTG---CA--CTCGCA-GATGTCGCGTTCG-CTCCACT-----GCA-CCACCACACG-GGGGACACCTCCTCTACCACG
4  --------------------------------------------------------------------------------
5  CTTT---AA--G-ATTT-CAATATATTGATA-CGGATA------GAT-TTCTTTTTATATTCCCTA-TAACATGCTTAGG
6  TTTTTACCTAGGCTCTTTCCGTTATGTGCGACAACATAAATAGGGAGGCTTTTTTTA-----------------------
7  AAGC---AG--TTTTTT-TATTTTGAAAGGA-GAATCGT-----T-----------------------------------
8  TTTTTACCTAGGCTCTTTCCGTTATGTGCGACAACATAAATAGGGAGGCTTTTTTTA-----------------------
9  ATTA---AG--TATAAC-TTCCTAAAAGTTA-TAAGAAA-----CCT-TTCTTTATAT-GAGTTTTAAGATTTAAAGTAT
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  AGTTGCTATC______________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  CGAATTACCGCAGCCGCACTTCGCCCGAAGTTCGGTCAGGCGATCACCGCGATCGGTCAGGGCGTGTTGTTTTGCCGGCC
4  --------------------------------------------------------------------------------
5  AACATCCGAATATGGTTCCCCGCATGGTATTCTGGGGATTAAACGTAGCTGAAACTGAGTCAGGATAG------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  ATTATTCCAATAAAAAATTCTCTTAAAATACTTTTAATAGAACTCATATTTTTTATTTTAAAACTTATAGGGAATTTTTA
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  ___________________________________________________________________
1  -------------------------------------------------------------------
2  -------------------------------------------------------------------
3  ACGCCGAGCGCGTTGCGCCTCACCACGGGCCATCCGCGCTCAAAGCACTAACCAACGAGGTTTAGCC
4  -------------------------------------------------------------------
5  -------------------------------------------------------------------
6  -------------------------------------------------------------------
7  -------------------------------------------------------------------
8  -------------------------------------------------------------------
9  TTTTGGATATAAATTTAAATCTTAATATGTAAATTCTAAAAAACTATAAGGAGATGAAATT------
10  -------------------------------------------------------------------
11  -------------------------------------------------------------------

Complementary Intergenic Regions

IGR  -   4003926  4004540  ()  15  yxjB