BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (- 4003926 to 4004540) circular

Islands  GA.AGCAAC.CC.A.GAGGG..A..A.GG,,,C,,,,,,,GC.C..A.CC..CAC,,,..C.GGAAG.GCAG,,,G.G.G
5'-   GATAGCAACTCCTATGAGGGTTATTATGGAAACAAAAAAAGCTCTTATCCTTCACAAATTCTGGAAGTGCAGAAAGTGTG
  |         |         |         |         |         |         |         |         
  4004540   4004530   4004520   4004510   4004500   4004490   4004480   4004470   
  |         |         |         |         |         |         |         |         
3'-   CTATCGTTGAGGATACTCCCAATAATACCTTTGTTTTTTTCGAGAATAGGAAGTGTTTAAGACCTTCACGTCTTTCACAC
Islands  C.A.CG..GAGGA.AC.CCCAA.AA.ACC...G.......CGAGAA.AGGAAG.G...AAGACC..CACG.C...CACAC

  
Islands  ,,,,,.AAGAGC,,,CAG,,,,GAAC..G.CC....CAAC.CG..C,,,...A..C,,,C...C..G.AG.C.AG.....
5'-   AAAAATAAGAGCAAACAGAAAAGAACTTGTCCTTTTCAACTCGTTCAAATTTATTCAAACTTTCTTGTAGTCTAGTTTTT
  |         |         |         |         |         |         |         |         
  4004460   4004450   4004440   4004430   4004420   4004410   4004400   4004390   
  |         |         |         |         |         |         |         |         
3'-   TTTTTATTCTCGTTTGTCTTTTCTTGAACAGGAAAAGTTGAGCAAGTTTAAATAAGTTTGAAAGAACATCAGATCAAAAA
Islands  .....A..C.CG...G.C....C..GAACAGG,,,,G..GAGCAAG...,,,.AAG...G,,,GAACA.CAGA.C,,,,,

  
Islands  .ACGG..AC.AGG.AG,,,CAA.CAGACCA.A..AC.GA.CA.A.ACAAGAA.G.C.....C.AAGA.GA.AGCAG.A..
5'-   TACGGTTACTAGGTAGAAACAATCAGACCATATTACTGATCATATACAAGAATGTCTTTTTCTAAGATGATAGCAGTATT
  |         |         |         |         |         |         |         |         
  4004380   4004370   4004360   4004350   4004340   4004330   4004320   4004310   
  |         |         |         |         |         |         |         |         
3'-   ATGCCAATGATCCATCTTTGTTAGTCTGGTATAATGACTAGTATATGTTCTTACAGAAAAAGATTCTACTATCGTCATAA
Islands  ,.GCCAA.GA.CCA.C...G..AG.C.GG.A.AA.GAC.AG.A.A.G..C..ACAG,,,,,GA..C.AC.A.CG.CA.,,

  
Islands  ..A.CC...CAC.....G,,,,.CAACC.....AAC.A....CACAA.AA.,,,,...A.A..C.,,,,.GAG,,,,.,,
5'-   TTATCCTTTCACTTTTTGAAAATCAACCTTTTTAACTATTTTCACAATAATAAAATTTATATTCTAAAATGAGAAAATAA
  |         |         |         |         |         |         |         |         
  4004300   4004290   4004280   4004270   4004260   4004250   4004240   4004230   
  |         |         |         |         |         |         |         |         
3'-   AATAGGAAAGTGAAAAACTTTTAGTTGGAAAAATTGATAAAAGTGTTATTATTTTAAATATAAGATTTTACTCTTTTATT
Islands  ,,.AGG,,,G.G,,,,,C....AG..GG,,,,,..GA.,,,,G.G..A..A....,,,.A.AAGA....AC.C....A..

  
Islands  ,GG,,,,,CA.GC.GGA..GC.A.GC.GA.A.GA.G..GGCGGGA.ACCAGCA.G.CAG.AC.GA.....C..CAC.A.A
5'-   AGGAAAAACATGCTGGATTGCTATGCTGATATGATGTTGGCGGGATACCAGCATGTCAGTACTGATTTTTCTTCACTATA
  |         |         |         |         |         |         |         |         
  4004220   4004210   4004200   4004190   4004180   4004170   4004160   4004150   
  |         |         |         |         |         |         |         |         
3'-   TCCTTTTTGTACGACCTAACGATACGACTATACTACAACCGCCCTATGGTCGTACAGTCATGACTAAAAAGAAGTGATAT
Islands  .CC.....G.ACGACC.AACGA.ACGAC.A.AC.ACAACCGCCC.A.GG.CG.ACAG.CA.GAC.,,,,,GAAG.GA.A.

  
Islands  AGG..CCAGC.CC.GGA.A...G..G.A.GA.GG,,,CGGGG,,,CCCA.ACAGCAG,,,GGGAG.......CA.GA..A
5'-   AGGTTCCAGCTCCTGGATATTTGTTGTATGATGGAAACGGGGAAACCCATACAGCAGAAAGGGAGTTTTTTTCATGATTA
  |         |         |         |         |         |         |         |         
  4004140   4004130   4004120   4004110   4004100   4004090   4004080   4004070   
  |         |         |         |         |         |         |         |         
3'-   TCCAAGGTCGAGGACCTATAAACAACATACTACCTTTGCCCCTTTGGGTATGTCGTCTTTCCCTCAAAAAAAGTACTAAT
Islands  .CCAAGG.CGAGGACC.A.,,,CAACA.AC.ACC...GCCCC...GGG.A.G.CG.C...CCC.C,,,,,,,G.AC.AA.

  
Islands  .CCAA..CA..CG..A.AGA.AA.GACAGG.G.AGAC,,,C.GCCAGACC.GGCCAA.....GAGA.AGGCC.AGG...A
5'-   TCCAATTCATTCGTTATAGATAATGACAGGTGTAGACAAACTGCCAGACCTGGCCAATTTTTGAGATAGGCCTAGGTTTA
  |         |         |         |         |         |         |         |         
  4004060   4004050   4004040   4004030   4004020   4004010   4004000   4003990   
  |         |         |         |         |         |         |         |         
3'-   AGGTTAAGTAAGCAATATCTATTACTGTCCACATCTGTTTGACGGTCTGGACCGGTTAAAAACTCTATCCGGATCCAAAT
Islands  AGG..AAG.AAGCAA.A.C.A..AC.G.CCACA.C.G...GACGG.C.GGACCGG..,,,,,C.C.A.CCGGA.CC,,,.

  
Islands  ...G.C.A.GCC.....CA...A.C.,,,,,.GAA.GAA.GGGG.G......A.C
5'-   TTTGTCTATGCCTTTTTCATTTATCTAAAAATGAATGAATGGGGTGTTTTTTATC
  |         |         |         |         |         |    
  4003980   4003970   4003960   4003950   4003940   4003930   
  |         |         |         |         |         |    
3'-   AAACAGATACGGAAAAAGTAAATAGATTTTTACTTACTTACCCCACAAAAAATAG
Islands  ,,,CAGA.ACGG,,,,,G.,,,.AGA.....AC..AC..ACCCCAC,,,,,,.AG

IGR  -   4003926  4004540  ()  15  yxjB

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 - 4003926 4004540 yxjB [COG0500]
1 Xanthomonas campestris pv. campestris str. ATCC 33913 P-g NC_003902.1 - 3413661 3414365 glk [COG0837]
2 Nostoc sp. PCC 7120 Cya NC_003272.1 - 5046250 5046354 rpl5 rps8 [COG0094 COG0096]
3 Streptococcus agalactiae B/C NC_004116.1 + 256325 256633 SAG0245 [-]
4 Mycoplasma penetrans B/C NC_004432.1 + 416051 416256 MYPE3180 [COG0363]
5 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 - 3190507 3190752 CAC3040 [COG0489]
6 Sulfolobus tokodaii A NC_003106.1 + 110771 110898 ST0089 [COG3370]
7 Listeria innocua Clip11262 B/C NC_003212.1 + 609962 610276 lin0583 [COG2723]
8 Clostridium perfringens B/C NC_003366.1 + 512728 513401 deoD [COG0005]
9 Borrelia burgdorferi plasmid lp54 Sp NC_001857.1 - 40982 41331 BBA60 [-]
10 Shewanella oneidensis MR-1 P-g NC_004347.1 + 891505 891661 SO0863 [COG3647]
11 Buchnera sp. APS P-g NC_002528.1 - 47196 47242 rplK rplA [COG0080 COG0081]
12 Clostridium tetani E88 B/C NC_004557.1 - 49538 49860 recF [COG1195]
13 Listeria monocytogenes strain EGD B/C NC_003210.1 + 610925 611239 lmo0574 [COG2723]
14 Haemophilus influenzae Rd P-g NC_000907.1 - 1376025 1376138 HI1296 HI1295 HI1293 HI1292 [COG1525 COG0520 COG2166 -]

0  ________________________________________________________________________________
1  GGCTAAACCTCGTTGGTTAGTGCTTTGAGCGCGGATGGCCCGTGGTGAGGCGCAACGCGCTCGGCGTGGCCGGCAAAACA
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  AATTTCATCTCCTTATAGTTTTTTAGAATTTACATATTAAGATTTAAATTTATATCCAAAATAAAAATTCCCTATAAGTT
9  TTATTTATTAAAATT-----------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------

  
0  _________________________________________________________GATAGCAACTCCTATGAGGGTTA
1  ACACGCCCTGACCGATCGCGGTGATCGCCTGACCGAACTTCGGGCGAAGTGCGGCTGCGGTAATTCGCGTGGTAGAGGAG
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  TTAAAATAAAAAATATGAGTTCTATTAAAAGTATTTTAAGAGAATTTTTTA------TTGGAATAATATACTTTAAATCT
9  ---------------------------------------------------------AAACTTAAACACTTCCCACACAC
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------

  
0  TTATGGAAACAAAAAAAGC_TC_____TTATCCT_TCACAAATT_CTGGAAGTGC__AG___AAAGTGTGAAAAATAAGA
1  GTGTCCCCCGTGTGGTGGT-GC-----AGTGGAG-CGAACGCGA-CATCTGCGAG--TG---CAGCGCCCCATGACGCGT
2  --------------------------------------------------------------------------------
3  ---------------------------------------------------------------------TACTTATAAAG
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  ---------TAAAAAAAGCCTCCCTATTTATGTTGTCGCACATAACGGAAAGAGCCTAGGTAAAAAAGGGAATAATAAAT
8  TAAAACTCATATAAAGAAA-GG-----TTTCTTA-TAACTTTTA-GGAAGTTATA--CT---TAATAAAAAAACAACACC
9  GTTTCAAAGAGGCTCCCAA-CG-----CGAGCCT-TCTTTGTAC-AAATTTTAAA--AA---TAAGTAAAATTCATATTT
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  ---------TAAAAAAAGCCTCCCTATTTATGTTGTCGCACATAACGGAAAGAGCCTAGGTAAAAAAGGGAATAATAAAT
14  --------------------------------------------------------------------------------

  
0  GCAAACAGAAAAGAACTTGTCCTTTT_CAACTCGTTCAAATTTAT__TC___AAACTTTCTTGTAGTCTAGTTTTTTACG
1  GGCTCGCAAATCTGGATGTTCCGGGC-GAGGGGCGCGCCAATCCG--TA---CAGTCGTAAAACAGTCCATGGCCCCTCC
2  --------------------------------------------------------------------------------
3  ACAAGGTTTCTAAACCTTGTCTTTTTTCTACTAGAT--AATTTAT--TGTGAAATGTTACTTGTAATATATATTTATTTT
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  AAAAATAGCAAAAAAATC--CCTATT-----------AAATTT-T--AC---AA--TAGCTCGTAGCCTGGCATTTTACG
8  TTTTTAGAGGTGTTGCTTTAAAAACT-AGAATTACTAGAATTTATAGTA---CAACTC-CTCGTAGTCTGCTATTTTACG
9  TAAAATGTGAGCTATACTTTAAGAAT-AGCTACATACTTCATCAA--GG---CCAGTAGACTGTTTAAATCAATATGAAA
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --GGAGAGTTTTAAAGTGGAAAAAAT-AAAGATAGATACAGATTT--TA---TAAAACTAGATTCATTTTTAAAATGGGC
13  AAAAATAGCAAAAAAATC--CCTATT-----------AAATTT-T--AC---AA--TAGCTCGTAGCCTGGCATTTTACG
14  --------------------------------------------------------------------------------

  
0  GTTACTAG__GTAGAA_____ACAATCAGACC_AT_ATTACTGATCATATACAAGAATGTCTTTTTC_TAAGATGAT_AG
1  TGCCTGAA--CTCCGA-----TTTGAATCGAG-TC-TCGCGTAGCGTTGACAGCGTTGTCAACACAT-CGTCACAGA-TC
2  --------------------------------------------------------------------------------
3  TTTCATTGTAGAAGAATTTATATAATAATAA--AT-ATTAATTATTA-ATTTAATTAGGGCATTT----AAAAT-AT-AC
4  -----GTA--AAATAA-----ACAAACACATTTATGAATATAATTTATATTCAAAAATGTGTTTTTTATACCTTTAT-AG
5  ---------------------------GTTAG-AT-GGTTTTGTTCATTTGTACAAGTGTTTTCAAA-TAA-ACAAA-AT
6  -------------------------------------------------------------------------------A
7  GTTGCCTG--GTAGAA-----ACGAACGGTCC-AT-ATTACCGAACTTATAC--GACTTTATTATTG-TA-GACGATTAG
8  GTTAGCAG--GTAGAA-----ACTTTCGGACC-AT-ATTACCGATTATATACGAG---------TTA-AAATTTAAT-AC
9  TAACACTA--CTTTTA-----ACTACCTCCAA-AG-AAGTTCTTTTGCATTAGAGAACTTCTTTTTT-CAATAATTA-AT
10  --------------------------GATATG-GG-TACCCTCTTAATTAATTGAAGTGGTTCTTAT-ATGCTATGC-TG
11  --------------------------------------------------------------------------------
12  TGCTATAG--CTAATA-----TGGGATCTGAA-GC-TAAGTTTTTAATAAAAGAGGGAATGATAAAA-GTAAATTCA-GA
13  GTTGCCTG--GTAGAA-----ACGAACGGTCC-AT-ATTACCGAACTTATAC--GACTATATTATTG-TA-GCGGATTAG
14  --------------------------------------------------------------------------------

  
0  CAGTATTTT_ATCCTTTCAC_TTTTTGA_AAATCAACCTT___TTTAACT_______AT_TTTC___ACAAT__AATA_A
1  TCTGAAGTG-GCTGCGATTG-CGCTGCA-ATGCAGCATTT---TTGTGCG-------GT-GGTT---TGCGG--AACG-C
2  ---------------------------G-GAATTAGCCGA---CTTGAG--------AT-TTTA---GATATGGAATT-A
3  AAATGATTT--TCTGTTTAC-ATGTTAA-GACTAAAACTA---TAAAAATACGTGAAAA-TTTT---GTTAT--ACTA-A
4  TTAAATAAT-TTTATTTTAT-TTATCAATAATTCAAAATC---TATGA-T-------AC-AAAG---GCAAT--TAAA-A
5  CATCCTTTTTAAATTTACACATTATTAA-AAATATATATT---TTAAAGT----------TCAC---ACAAT--TATT-A
6  GATATTTTT-ATCCTTTCAC-TTTTTTA-AACATAACTTTACTTTTGGAA-------AT-TTACTATAAATT--AGTA-A
7  CCGATTTTT-GGCAATACA--TGAATGA-AA-TAAAAATA---AAAAACA-------AACTTTT---ACATA--AATA-A
8  ACTTATTAT-ATCACGAAAA-ATTCA-A-ATATCAATAGT---TTATATT-------GT-TCGC---TATAT--AGAT-T
9  TTCTATTAT-TTTTAATAAA-TTTAATC-AAATTAGC--T---TTAAAAC-------AA-CTTA---TTAAT--AATT-A
10  ACAACCTTT-GTCCACCAAA-GTAGCAC-TTTTTGGGCTC---ACTGTGG-------AG-GGCT---AGATG--GCTA-A
11  --------------------------------------------CATATC-------TT-GTAA---ATTTT--AATA-A
12  GGTTGAAAC-TAGAAGAGGT-AAAAAGC-TTTATAAAGGT---GATAAGG-------TT-GAAT---TTGAT--AATA-A
13  CCGATTTTT-GGCAAT--AC-GTGTAAG-AAATAAAAATT---AAAAACG-------AA-CTTT---TAAAT--AAAT-A
14  ------------------------------ATACAACCTT---TTCAACT-------AT-TTTC---ATAAT--ATTTCA

  
0  AATT_TATA_TTCTAA__AATGAGA___A__AA_T_AAAGGAAAAACA_TGCTGGAT_TGC_TATGCTG_ATATGATGTT
1  CAGC-GGCG-CTGCGC--AATTGGG---C--CG-C-ACGCGATGTGTG-CAGCCATC-GGC-CGTTTCT-ATGGCTGATG
2  AATT-TACA-ATCTAA--AATCGGA---A--AA-T-AAAGTTTCCCTG-ACAAAGCC-CAG-GGAGAAT-CAGGACAAAA
3  AATT-AATT-TTATAA--TGTTGGT---G--AA-T-AATAGTTAATTT-CATTATAT-ACT-TGATATA-TAAAATTTAT
4  AATAATATA-ATCTAATCATTGAGT---A--CA-A-AAATATTTTTGT-AACTTCAT-ATA-AATATAA-TAGTTATAAA
5  CGTA-TATG-TTGTAT--AATAAAT---A--AA-T-CTAGTATAATCA-AGCTTAAAATGCATATAATGCATAAAAGTTT
6  GTTT-AAAG-CTATTT--AATGTTT---ATCAA-A-AATGAAAATATA-AGCTAATT-TAA-TATAAGC-AATT------
7  G-TT-TATACTTTTAA--AAAAATA---A--GG-T-ATAATAAAATCA-AATAATAG-TTG-GAGGTAA-AAAA------
8  TATT-T-TA-TTTTTA--AATTATT---T--T--T-AATGGAAGTATA-TGTAATAA-TTT-TATTTTG--TATTAAGAA
9  ATAT-TA-A-TTATAT--AATGAAA---A--AA-CCAAAGGATAAGGA-GAAATAA------------------------
10  AGTT-AATA-TTCTAA--AATGAGA---A--CA-A-TATCGCATAAGA-GGAAGGAA-CA--------------------
11  AAAT-TTTA-TA-TAA--AATGAGA---A--AA-T-A-------------------------------------------
12  AATT-TATA-TTATAG--AATAAGAGATA--GA-T-AGATATAGCACAATGCATGAT-TAA-TCACTTT-ATATTAATTG
13  AGTT-TATA-CTTTTA--AATAAAT---A--AGGT-ATAATAAAAACA-AATAATAG-TTG-GAGGTAA-AAAA------
14  AAAT-TATT-TTACGC--TTTTTTT---T--GC-T-AACTTGAGCCAT-TTTTTCGG-TAA-AATAACC-AGACTTAGAT

  
0  GGCGGGATACCAGCATGTCAGTACTGATTTTTCTTCACTATAAGGTTCCAGCTCCTGGATATTTGTTGTATGATGGAAAC
1  TGCAATTCAAGCCGACATCACTAAAGTTTGTGCCGGAATCACCATTACCAGCGCT--GATATTTGTTGGATGATGGAATT
2  AACT----------------------------------------------------------------------------
3  ATTCTAAGAAAAGAGAACATG-----------------------------------------------------------
4  TTGGAGCAACA---------------------------------------------------------------------
5  GATGCTATAGAGTTAAATACTAATGTAATAATATTACTTTTATGTAAAAATAAGAGGTGGTGAAAAATCA----------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  ATTTTAAAATAAGTATAAGAAAAAAGAACTATCTCTTATTTCTAAGGATTTTTTATTAATTTAAAAATACTTTTAGTTTA
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  CATTGTGCTAAATAATTTATTGTACTTTAAGATTATGATATAATTATAAACAG---------------------------
13  --------------------------------------------------------------------------------
14  CAAAAACTTTGCAAA-----------------------------------------------------------------

  
0  GGGGAAACCCATACAGCAGAAAGGGAGTTTTTTTCATGATTATCCAATTCATTCGTTATAGATAATGACAGGTGTAGACA
1  TGCCGCGCGCGCGACGCAGTACGCGCGCGACGGTTGCGTTACAGGACGATTGCTGACAACGTTGTCTACCCGCTCGCCGT
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  AAAGGTATATTTTTTAGTATAAAACCTATATGAAAGTCTTGGACAAATGTCCTTGAAAACATTTACTTAATATTTGATAA
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------

  
0  AACTGCCAGACCTGGCCAATTTTTGAGATAGGCCTAGGTTTATTTGTCTATGCCTTTTTCATTTATCTAAAAATGAATGA
1  TCGTCGGCCAGCAGGACGATGTCGGCCCCGCTGCCACTTATCAGGAGAATGC----------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  TAAGCTTGTAAGAAATACATTGAGAGGAGAATTTAAA-------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------

  
0  ATGGGGTGTTTTTTATC
1  -----------------
2  -----------------
3  -----------------
4  -----------------
5  -----------------
6  -----------------
7  -----------------
8  -----------------
9  -----------------
10  -----------------
11  -----------------
12  -----------------
13  -----------------
14  -----------------

Complementary Intergenic Regions

IGR  +  4003926  4004540  ()  12  yxjA