BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (+ 3977990 to 3978544) circular

Islands  GC...C.CC.CCA...CCGG..,,,,C.G..AA...GC.CAC.AC..CAC,,,.AGAACCGAGAC...GA.CAG.AA..C
5'-   GCTTTCTCCTCCATTTCCGGTTAAAACTGTTAATTTGCTCACTACTTCACAAATAGAACCGAGACTTTGATCAGTAATTC
  |         |         |         |         |         |         |         |         
  3977990   3978000   3978010   3978020   3978030   3978040   3978050   3978060   
  |         |         |         |         |         |         |         |         
3'-   CGAAAGAGGAGGTAAAGGCCAATTTTGACAATTAAACGAGTGATGAAGTGTTTATCTTGGCTCTGAAACTAGTCATTAAG
Islands  CG,,,GAGGAGG.,,,GGCCAA....GACAA..,,,CGAG.GA.GAAG.G...A.C..GGC.C.G,,,C.AG.CA..AAG

  
Islands  AC,,,,.AGACG,,,,,,,.A..GC.CAA.A...CAC,,,.G.G.C,,,,,G.CA.CCAA.A.GA.GCAAGA..GCCAGA
5'-   ACAAAATAGACGAAAAAAATATTGCTCAATATTTCACAAATGTGTCAAAAAGTCATCCAATATGATGCAAGATTGCCAGA
  |         |         |         |         |         |         |         |         
  3978070   3978080   3978090   3978100   3978110   3978120   3978130   3978140   
  |         |         |         |         |         |         |         |         
3'-   TGTTTTATCTGCTTTTTTTATAACGAGTTATAAAGTGTTTACACAGTTTTTCAGTAGGTTATACTACGTTCTAACGGTCT
Islands  .G....A.C.GC.......A.AACGAG..A.,,,G.G...ACACAG.....CAG.AGG..A.AC.ACG..C.AACGG.C.

  
Islands  C.GACC,,,.GACACAA.C.C.GAC.GG..CA.A..AAG.AC...ACAACGA..CA...C,,,,,.,,,GCC.,,,,.AC
5'-   CTGACCAAATGACACAATCTCTGACTGGTTCATATTAAGTACTTTACAACGATTCATTTCAAAAATAAAGCCTAAAATAC
  |         |         |         |         |         |         |         |         
  3978150   3978160   3978170   3978180   3978190   3978200   3978210   3978220   
  |         |         |         |         |         |         |         |         
3'-   GACTGGTTTACTGTGTTAGAGACTGACCAAGTATAATTCATGAAATGTTGCTAAGTAAAGTTTTTATTTCGGATTTTATG
Islands  GAC.GG...AC.G.G..AGAGAC.GACCAAG.A.AA..CA.G,,,.G..GC.AAG.,,,G.....A...CGGA....A.G

  
Islands  C.,,,,,G.CCCGCAC.A.G.GACGGA.....G.C.A....G..GC..A...A.G.CGGC.GC.AGGA.,,,.GACCC..
5'-   CTAAAAAGTCCCGCACTATGTGACGGATTTTTGTCTATTTTGTTGCTTATTTATGTCGGCTGCTAGGATAAATGACCCTT
  |         |         |         |         |         |         |         |         
  3978230   3978240   3978250   3978260   3978270   3978280   3978290   3978300   
  |         |         |         |         |         |         |         |         
3'-   GATTTTTCAGGGCGTGATACACTGCCTAAAAACAGATAAAACAACGAATAAATACAGCCGACGATCCTATTTACTGGGAA
Islands  GA.....CAGGGCG.GA.ACAC.GCC.,,,,,CAGA.,,,,CAACGAA.,,,.ACAGCCGACGA.CC.A...AC.GGG,,

  
Islands  .A..A.CG.ACA.CAACACA.CG..CC..GCGAAC,,,,.GC..GCCCCCGCCCCAGCAC.CGAG.C.CAGCA..CCG.C
5'-   TATTATCGTACATCAACACATCGTTCCTTGCGAACAAAATGCTTGCCCCCGCCCCAGCACTCGAGTCTCAGCATTCCGTC
  |         |         |         |         |         |         |         |         
  3978310   3978320   3978330   3978340   3978350   3978360   3978370   3978380   
  |         |         |         |         |         |         |         |         
3'-   ATAATAGCATGTAGTTGTGTAGCAAGGAACGCTTGTTTTACGAACGGGGGCGGGGTCGTGAGCTCAGAGTCGTAAGGCAG
Islands  ,.AA.AGCA.G.AG..G.G.AGCAAGGAACGC..G....ACGAACGGGGGCGGGG.CG.GAGC.CAGAG.CG.AAGGCAG

  
Islands  ..,,,CCGA....AG.CAGAA.GCC.C....CA...GAACCGG.AAGAGGAG,,,,G..GAA.AG.,,,.....AA.A.A
5'-   TTAAACCGATTTTAGTCAGAATGCCTCTTTTCATTTGAACCGGTAAGAGGAGAAAAGTTGAATAGTAAATTTTTAATATA
  |         |         |         |         |         |         |         |         
  3978390   3978400   3978410   3978420   3978430   3978440   3978450   3978460   
  |         |         |         |         |         |         |         |         
3'-   AATTTGGCTAAAATCAGTCTTACGGAGAAAAGTAAACTTGGCCATTCTCCTCTTTTCAACTTATCATTTAAAAATTATAT
Islands  AA...GGC.,,,,.CAG.C..ACGGAG,,,,G.,,,C..GGCCA..C.CC.C....CAAC..A.CA...,,,,,..A.A.

  
Islands  ..AA.AA...CAA......AG.A.AC..AACA.AG.GAACAA...CAC.GCA.CAAGAA.AGGGGAGG.....CA
5'-   TTAATAATTTCAATTTTTTAGTATACTTAACATAGTGAACAATTTCACTGCATCAAGAATAGGGGAGGTTTTTCA
  |         |         |         |         |         |         |         |    
  3978470   3978480   3978490   3978500   3978510   3978520   3978530   3978540   
  |         |         |         |         |         |         |         |    
3'-   AATTATTAAAGTTAAAAAATCATATGAATTGTATCACTTGTTAAAGTGACGTAGTTCTTATCCCCTCCAAAAAGT
Islands  AA..A..,,,G..,,,,,,.CA.A.GAA..G.A.CAC..G..,,,G.GACG.AG..C..A.CCCC.CC,,,,,G.

IGR  +  3977990  3978544  ()  15  yxkJ

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 + 3977990 3978544 yxkJ [COG3493]
1 Thermoplasma acidophilum A NC_002578.1 + 1227823 1227919 Ta1156 [-]
2 Mycoplasma pulmonis B/C NC_002771.1 + 739577 739696 MYPU_6230 MYPU_6240 [COG0171 COG0217]
3 Shigella flexneri 2a str. 301 P-g NC_004337.1 - 1456221 1456575 yoaC [-]
4 Escherichia coli K12 P-g NC_000913.1 + 1891736 1892096 b1810 [-]
5 Bacillus subtilis B/C NC_000964.1 - 3977990 3978544 cydA cydB cydC cydD [COG1271 COG1294 COG4988 COG4987]
6 Campylobacter jejuni P-e NC_002163.1 + 1304969 1305111 Cj1368 Cj1369 Cj1370 [COG1060 COG2252 COG2236]
7 Vibrio cholerae chromosome II, complete chromosome P-g NC_002506.1 + 317333 317509 VCA0303 [-]
8 Bacillus halodurans B/C NC_002570.1 + 237658 237935 BH0220 BH0221 BH0222 BH0223 [COG3711|COG1762 COG1762 COG3414 COG3037]
9 Methanococcus jannaschii A NC_000909.1 - 1171518 1171710 MJ1228 [COG0231]
10 Streptococcus agalactiae B/C NC_004116.1 - 1697422 1697873 SAG1701 SAG1700 [- -]
11 Methanococcus jannaschii A NC_000909.1 + 1284121 1284334 MJ1335 [COG0279]
12 Streptococcus mutans UA159 B/C NC_004350.1 + 719348 719788 gbpD [COG4099]
13 Clostridium tetani E88 B/C NC_004557.1 + 2785066 2785526 CTC02638 [COG1592]
14 Borrelia burgdorferi plasmid lp28-3 Sp NC_001853.1 - 10517 10817 BBH13 [-]

0  _________________________________________GCTTTCTCCTCCATTTCCGGTTAAAACTGT___TAATTT
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  TGAAAAACCTCCCCTATTCTTGATGCAGTGAAATTGTTCACTATGTTAAGTATACTAAAAAATTGAAATTA---TTAATA
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------CTGACTTCCCCCTTAACCTCTCTATAACTT
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------

  
0  GCTCACTACTTCACAAATAGAACCGAGACTTTGATCAGTAATTCACAAAATAGACGAAAAAAATATTGCTCAATATTTCA
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  TATTAAAAATTTACTATTCAACTTTTCTCCTCTTACCGGTTCAAATGAAAAGAGGCATTCTGACTAAAATCGGTTTAAGA
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------ATGATCTTCAAA
8  TCTTACTACCT---AAAGTGTACCACGATATTGCTCAATATTTCACAAAGTCTTGTGAACGATTTCGCACAAAGCTAGAA
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------

  
0  CAAATGTGTCAAAAAGTCATCCAATATGATGCAA__GATTGCCAGACTGACCAAATGACACAATCTCTGACTGGTTCATA
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  CGGAATGCTGAGACTCGAGTGCTGGGGCGGGGGC--AAGCATTTTGTTCGCAAGGAACGATGTGTTGATGTACGATAATA
6  --------------------------------------------------------------------------------
7  CAAATGTGTTAAAAAGTCAT----TGTTAAACAATGGGCTACGAAACTAAC-AAACGCCTCAAGAGGGACTGTCAACGCG
8  AAGGCTGAAGGTAGGCTTTAAAGTTCCTTCTCAA--GGTTTCGGTACAATTTTGCACAGATCGATCGGGAGTCATTTGGT
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------

  
0  TTAAGTACTTTACAACGATTCATTTCAAAAATAAAGCCTAAAATACCTAAAAAGTCCCGCACTATGTGACGGA_TTTTTG
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  AAGGGTCATTTATCCTAGCAGCCGACATAAATAAGCAACAAAATAGACAAAAA-TCCGTCACATAGTGCGGGACTTTTTA
6  --------------------------------------------------------------------------------
7  CGGCGTTTCCAGTCCCGTTGAGCCGCAGTGGTTGCAGTTGTTGTGTTTGAGTTTAGTGGTGATGCGTTGTCAG-CCCCTT
8  CTTATCATGTTATAAAAAAATCAATAAGATAAACTTAAAGGAATGATACAAACGTACTATTTGGCAAACAACC-GTGTGG
9  --------------------------------------------------------------------------------
10  --------------------------------------------------TGCTACTAACTCCTATTATTTCA-ACTATT
11  --------------------------------------------------------------------------------
12  -----------GTTGATTATGCTTTCATTAGCAGTTGATTTTTCTGAACTGTAATTATTGTTATTATAGCATA-ATGGAC
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------

  
0  TCTATTTTGTTGCTTATTTATGTCGGCTGCTAGGATAAATGACCCTTTATTATCGTACATCAACACATCGTTCCTTGCGA
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  GGTATTTTAGGCTTTATTTTTGAAATGAATCGTTGTAAAGTACTTAATATGAACCAGTCAGAGATTGTGTCATTTGGTCA
6  --------------------------------------------------------------------------------
7  AGGCGGGCGTT---------------------------------------------------------------------
8  ATGGGGGAATCCAT------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  ATTGGAAAAATAATTCAAAGTATAAGTGAAAATCTAGAAATTTCAAATTTTTCAATTTTATTTTCTATTGTATATTTATC
11  --------------------------------------------------------------------------------
12  TGAAAAATATATTATCAAGATTACTGTATTCAAAAAAATAGATTCAGATTGAAGACAAAGTCCTCTTTTTTATCATGACG
13  -------------------------------CCTCCAATAAATTTAAATTATATTTTTTATTATAACATACAATATAGAT
14  --------------------------------------------------------------------------------

  
0  ACAAAATGCTTGCCCCCGCCCCAGCACTCGAGTCTCAGCATTCCGTCTTAAACCGATTTTAGTCAGAATGCCTCTTTTCA
1  -----------------------------------------------------------------TATTCCCCGTATCGT
2  -------------------------------------------------AAAATAATATATTATTATAGAATAAAAAATA
3  --------------------GCTTTATCGAAGCAAAATAAGTCAGACGATAATTTATCGATAATACTGGTCGGTTTTACA
4  -------GCTTTATCGAAGCAAAATAAGTCAGACGATAATTTATCGATAATACTGGTCGGTTTTACATAAATCGACCAGA
5  GTCTGGCAATCTTGCATCATATTGGATGACTTTTTGACACATTTGTGAAATATTGAGCAATATTTTTTTCGTCTATTTTG
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  -------------------------------------------CTATCTAAAATTTTATTTTTTATATGCTTAAAAGATA
10  TTTATTGATACTAGTTTCAGGATTTACAGTAAAATTGATGAGAAGAAAAAATGATTATGAAGAGCTAGAAATTTTCCCTG
11  --------------------------------------------------------------------------------
12  GAAAGACTCGTTTGGATCTTGCTCTTCGTTTGCCAATAAAAGAGTTAGTCTTAAAATTTGCAGAACTTAAAAAAGCTTTA
13  AACCTAGTTTTTCTTACTAGCATATATATAACCATTTTGTTGCTTATTTATTACATCAAATCCTTTGTTGTTAAGAATTT
14  --------------------------------------------------------------------------------

  
0  T___TTGAACCGGTAAGAGGAGA__AAAGTTGA_A__TAG_TAAATT__T___TTAAT_ATATTAATA___ATTTCAA__
1  T---AATGTTTAGTAAGCTGTTA--ACACTTC-----TAC-CATATG--A---AAACT-ATATTAATAAG-ATTTAAA--
2  T---ATAGTATTTAAAAATGCCT--TAAATTGA-A--TTTATAAGTTA-T---TTTTT-AAACTTGTA---ATTTCAA--
3  TAAATCGACCAGAGAATAAGATATTACTGTTGA----TGC-TAATTC--A---TTATTTATATTTATA---ATTTCAA--
4  G---AATAAGATATTACTGTTGA--TGCTTCTG-C--TAA-TTCATT--A---TT--T-ATATTTATA---ATTTCAA--
5  T---GAATTACTGATCAAAGTCT--CGGTTCTA-T--TTG-TGAAGT--A---GTGAG-CAAATTAAC---AGTTTTA--
6  -------------------------------------------AATT--T---CTACT-CTCTTTAAA---ATTTTAA--
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  G---AAGTTATTGAAATTTTGTT--AAATTTGA-A--TAT-TAAATT--T-----AAT-AGATTAATA---AGATTAA--
10  G---ACAGTTAAAAAAATTTATT--AAAGATGCTA--AAG-TACAT---------AAT-ATATTAATA---ATTTCAA--
11  ----------------------C--CTCTCCCT-T--TAG-TAAATT--T---TTATT-AAATTAATTTATGTTACAA--
12  C---TGAAAAAATAGATTTATCT--ATATTCTA-A--TAT-TGAATT--T---TTAAT-AAATTAATA---AGTTATC--
13  T---ACATATTATATCTAATTCA--TCTTTTGA-A--TTA-CAATTTAAT---TTAAT-AGA--AATT---TTATCATCC
14  ------ATTTTTAATCATCAAGA--TAAATTGA-AATTAT-GAGCTT--TAGCTTTTT-ATCT-AATA---ATTTCAA--

  
0  T_TTTT__TAGTA_TA__C_TTAACATA_GTGAAC__AATTTCACTGCATCAAGAATAGGGGAGGTTTTTCA________
1  T-ATTT--TAGTA-TA--A-TACTAAAT-T--------------------------------------------------
2  T-TTTT--TAGTG-T------TAAAATT-GTTAAA--AAT----------------------------------------
3  T-TTTATCTATAA-AA--C-TAACTATA--TAAAT--AAACATAACCATGCCGTTGTGTTCGCCCTTTGATTAGCAACTC
4  T-TTTATCTATAA-AA--C-TAACTATA--TAAAT--AAACATAAACATGCCGTTGTGTTCGCCCTTTGATTAGCAACTC
5  A-CCGG--AAATG-GA--G-GAGAAAGC----------------------------------------------------
6  T-ATTT--TAATAATAATC-TTAACAAA-AATATC--TTTTATTTTGGCTTTTTCTATAAACTCTTTTTCAGTAAGCAAA
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  T-AATC--TCAAA-AA--C-TCAGAATG-TGTTGA--TAGTAATATTTATATAACATAAGGCAATAGTTATTAAAAGTTT
10  TCTCTT--TCATA-TT--A-AGTTTTAG-TATCCT--ACTTTTATTTAAATTATTTCTACAAGTTTTAGATTTCAATTTA
11  T-TATA--TAGTA-T------TAATATA-GTAGGT--ATAAATAATTTGGTGATGATTATGAAAAAGTATTTCGAGGAAA
12  T-TATC--CATAAATA--CGTTAATTTTTGTTAACTTAATTTTTAACAATTCTAACATTGCTATTGTTTTTAGATTACAA
13  T-TTTT--TGGTA-T---C-TCCAAATA-GTCATT--TATTGAACTGTAATCTGATAAATTCATATTCCCATTTATGTCT
14  T-TTAT--TATTA-TA-----TAAATTA-CTAAA----ATATCAACGAATAAAATAAATTTTTTTAGAAAAATTGGATTT

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  TGGTTTTCTTTCTTAGCTGAACAATCTGGTTATAGCGTGCGGGCTGACCGTTAATTTTCTCCATCTTACTGGATAACACA
4  TGGTTTTCTTTCTTAGCTGAACAATCTGGTTATAGCGTGCGGACTGACCGTTAAATTTCTCCATCTTACTGGATAACACA
5  --------------------------------------------------------------------------------
6  AATTATAATGCTTTATTTAAAAACAGCAAAAGAGTAAAATTAAA------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  CTTTTTTAGAAAATAAAAGGTGATAATA----------------------------------------------------
10  TTCATTATTTTGGGAATACTTTTTGTGTCTGTACTAATATTAATATTGGAATATAGACCTTATAAAAGAAAAAAGGTATT
11  GTGCAAATGTGAAACTAAAATTCATTGAAGAAGATGAGGAAAAGTTAAAAAAAGCTATTGAAGTCATATATAATGCATTA
12  TGCTGGAACTTCCATAGTATTTCATTTTATAAAGTGTTAAACTTGATTAAAATAATGATAATATAGAAAGAGCTCCTT--
13  AATTTATAATCTGACATATTGATTCTCCTTTTATCCTTTTTACTTTCTTATTTTTCGTATTTAAAAACAAATTATACCTA
14  AAGGTGGGTAGCGGTCCTAATAAAGTGGAATAAGTTTTTCTCATAAAGAGGGATTAAATATGAAAATATATTTAGTTTGT

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  CCATGAGCTGCTACCTTTAAAACACCTGAATGTCAACAGGTTAACTCGTGCCATATCGTTATAATCCCTTTGATATTAG-
4  CCATGAGCTGCTACCTTTAAAACACCTGAATGTCAACAGGTTAACTCGTGCCATATCGTTATAATCCCTTTGATATTAG-
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  GATCGAATTAGAAAAAAATAGTAATAGTGGAACCAATATATAAAAGGAGTTGTGA-------------------------
11  AAAAATGGAAATAAAATTTTAAT---------------------------------------------------------
12  --------------------------------------------------------------------------------
13  TATAAATATACCTTATTAGTTAATTTATGCATAAAATTATTTGATAATATACAGAATAGTGTTATAATTTATATGTATAA
14  GTGCATTATATCTGCTTTATGAGATTTTGAAGGAAATGTTCCGATATTTGGCTTTGATTTATGTTAAAATATATATATAG

  
0  _________________________________________
1  -----------------------------------------
2  -----------------------------------------
3  -----------------------------------------
4  -----------------------------------------
5  -----------------------------------------
6  -----------------------------------------
7  -----------------------------------------
8  -----------------------------------------
9  -----------------------------------------
10  -----------------------------------------
11  -----------------------------------------
12  -----------------------------------------
13  CACTTTTATAAACATAATTAATTATAGGAGGTCATTATATA
14  TAGGTGAGTGAATT---------------------------

Complementary Intergenic Regions

IGR  -   3977990  3978544  ()  9  cydA cydB cydC cydD