BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (- 3929347 to 3929502) circular

Term (97.08)%  ---------------------GCTGTTCTGTAAAAGGACAGC--------------------------------------
Islands  .CG..CA....CC..C,,,GGGC.G..C.G.,,,,GGACAGC......GC.G.CCA.CAAGG....CAGACC..C,,,..
5'-   TCGTTCATTTTCCTTCAAAGGGCTGTTCTGTAAAAGGACAGCTTTTTTGCTGTCCATCAAGGTTTTCAGACCTTCAAATT
    |         |         |         |         |         |         |         |       
    3929500   3929490   3929480   3929470   3929460   3929450   3929440   3929430 
    |         |         |         |         |         |         |         |       
3'-   AGCAAGTAAAAGGAAGTTTCCCGACAAGACATTTTCCTGTCGAAAAAACGACAGGTAGTTCCAAAAGTCTGGAAGTTTAA
Islands  AGCAAG.,,,,GGAAG...CCCGACAAGACA....CC.G.CG,,,,,,CGACAGG.AG..CC,,,,G.C.GGAAG...,,
Term (88.18)%  -----------------------------------CCTGTCGAAAAAACGACAGG-------------------------

  
Islands  ..AA..GAC,,,GGACAGGAAC.GGC.A.GA..A.G..A.ACAA.GA.AA.CA....CAA..A.AGGAGGAACA.G
5'-   TTAATTGACAAAGGACAGGAACTGGCTATGATTATGTTATACAATGATAATCATTTTCAATTATAGGAGGAACATG
    |         |         |         |         |         |         |         |   
    3929420   3929410   3929400   3929390   3929380   3929370   3929360   3929350   
    |         |         |         |         |         |         |         |   
3'-   AATTAACTGTTTCCTGTCCTTGACCGATACTAATACAATATGTTACTATTAGTAAAAGTTAATATCCTCCTTGTAC
Islands  ,,..AAC.G...CC.G.CC..GACCGA.AC.AA.ACAA.A.G..AC.A..AG.,,,,G..AA.A.CC.CC..G.AC

IGR  -   3929347  3929502  ()  21  ywbL ywbM ywbN

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 - 3929347 3929502 ywbL ywbM ywbN [COG0672 COG2822 COG2837]
1 Clostridium tetani E88 B/C NC_004557.1 + 967691 967867 CTC00914 CTC00915 [COG1132 COG1132]
2 Clostridium perfringens B/C NC_003366.1 - 2720685 2721084 rpsD [COG0522]
3 Clostridium perfringens B/C NC_003366.1 + 290910 291055 CPE0220 [-]
4 Listeria innocua Clip11262 B/C NC_003212.1 + 1029709 1029927 lin1006 [-]
5 Listeria innocua Clip11262 B/C NC_003212.1 - 574670 574780 lin0545 [COG0614]
6 Oceanobacillus iheyensis B/C NC_004193.1 + 478613 478814 OB0452 OB0453 [COG0609 COG0609]
7 Clostridium perfringens B/C NC_003366.1 - 993782 994043 CPE0809 [COG1434]
8 Clostridium perfringens B/C NC_003366.1 - 1536992 1537693 eno [COG0148]
9 Listeria monocytogenes strain EGD B/C NC_003210.1 + 1038117 1038335 lmo1007 [-]
10 Listeria innocua Clip11262 B/C NC_003212.1 - 2320693 2320907 lin2290 lin2289 [- -]
11 Listeria innocua Clip11262 B/C NC_003212.1 + 396810 396937 lin0384 lin0385 lin0386 [COG0672 COG2822 COG2837]
12 Staphylococcus aureus subsp. aureus N315 B/C NC_002745.1 - 2340088 2340300 SA2079 [COG0614]
13 Oceanobacillus iheyensis B/C NC_004193.1 + 572057 572290 OB0539 OB0540 OB0541 [COG4606 COG4605 COG4604]
14 Staphylococcus aureus subsp. aureus N315 B/C NC_002745.1 - 2365322 2365923 SA2102 SA2101 [COG3383 COG2427]
15 Staphylococcus aureus subsp. aureus N315 B/C NC_002745.1 - 2122912 2122976 alr [COG0787]
16 Bacillus halodurans B/C NC_002570.1 + 4017933 4018101 fhuD [COG0614]
17 Bacillus subtilis B/C NC_000964.1 + 923007 923093 yfhC [COG0778]
18 Listeria monocytogenes strain EGD B/C NC_003210.1 - 581040 581149 lmo0541 [COG0614]
19 Listeria monocytogenes strain EGD B/C NC_003210.1 + 391474 391603 lmo0365 [COG0672]
20 Listeria monocytogenes strain EGD B/C NC_003210.1 - 2274751 2274960 lmo2186 lmo2185 [- -]

0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  AAATAGAATTTAATATTTAACTGCATAAATTATAAAAGAGAGCTATATCAATACTATTTATGAGAGAATTTATAAATATA
3  --------------------------------------------------------------------------------
4  TTTTGTCACCTTTCTTTATAAGAAAATCCCGTGAAAATCAG---------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  CTTTAGTCCTCCTAATTTCCTTATTAGATTACCCTCGACCCTCATCAATG------------------------------
8  TTTAAAGAAGGCTGTCCTAAAGAGTTGATAACTCATCTTGTTTAGGAGAGCCTTTTTTTTATACCTTAAATTTATATATT
9  TTTCGTCACCTTTCTTTATAAGAAAATCCCGTAAAAATTAG---------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  ATTTAAAAAGGTAAATCGATCGTTGATTGGCATAAAGAGATGAAATTTGACGTTCGGATTT-------------------
13  TAACAAAGGTAATAATTATTTGTACAGCTATAGCAGCAAAATAAAATTGACAGTAAG-----------------------
14  TAAACTAAGGGAAAATAAGTTATCAAAATTGTACACAAATTAATTAGATAGAATGATCTGTAAATAGAATAACGAATAGA
15  --------------------------------------------------------------------------------
16  CTAATCCCTC----------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------
19  --------------------------------------------------------------------------------
20  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  AAATTTATGAATTCTTATAAGTTAAGAGTTTGATATAGCTTTTTTATGCCTATACTAAAATTCATATATAAATAAGAGTG
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  TTTTTCTAATAATATTAAAGTAAATTTTGAAAATTAATTTATAAATTCATTTATAAGTGCAAATAATAAAAATAGAATTT
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  ACTAATAGCCCGTAAATAGAAGGTGATAACACTTTGTATTTATGGGCTATTTTATTTAATGCCTGATTTGATTTTTATAA
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------
19  --------------------------------------------------------------------------------
20  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  ATTTAAGTGGAATAGATTGATAGCTAATTGAATCTA--------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  AAATTACTTAATTACAAAGGACAAGGAGAATAGAAAATGAGCAAGAAAAAAACTTTAAATGGAATACAACAAAGTATGAA
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  ATTAATCCATTACAAATTTAATTTAAAGATAAATATTACCTTCTAAATGGTAGTAGATATTTATCAAACTTGGGTTATTA
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------
19  --------------------------------------------------------------------------------
20  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  ACAGCACAATGCTGAATCTTCAAATTCAAAAACTGGATTTAATGAGAGAAGTAATACAGCTAAAGAACCAGGAATAGCAA
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  ATTTTC--------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------
19  --------------------------------------------------------------------------------
20  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  ATACAAAAGGACTTTAAAATTATGAAAATGAGCTTTTAAATAGCTCATTTTTCTTTTAAGGAATTTAAATTAAAGAATCT
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------
19  --------------------------------------------------------------------------------
20  --------------------------------------------------------------------------------

  
0  __________________________________TCGTTCATTTTCCTTCAAAGGGCTGTTCTGTAAAAGGA_CAGCTTT
1  -------------------------------------------------------------------------------A
2  ----------------------------------GTTACTAAAATTAGAGTTTATTATAAATGAATTTATTT-TATAGAA
3  -------------------------------------------------------------ACAAAATCCTC-CTTTTTA
4  ----------------------------------GTGGGAGTAAGCTTCATAATTTCATTCCATTATAGCTT-AAAAAGG
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  ----------------------------------ATAATCATTTTCATATAAACA--TGATTTATTATATCATCAGATTT
8  TTGAATTTAAAAAATAAGATTTTATAAGTTTTTTAGAGGGATTAATATTTATGGTTAATTCATATAAAAGAC-TAGTCTA
9  ----------------------------------GTGGGAGTAAGCTTCGTAATTTCATTCCATTATAGCTT-AAAAAGA
10  ------------------------------------------------------------------AACAGT-AAATATT
11  ---------------------------------------------------------------------AAA-ACTTCGA
12  ----------------------------------ACCCTTTTTTGTGGGGATTTATAGGGATGTTAAGATAT-TTTGCTA
13  ----------------------------------AGGATAGCGCAAGTTCCTTTTACTGTTTTTATATGGAA-ATCAATT
14  ----------------------------------AGAAAAAGGGTATTTATAAATAGTATAACGATTTTTAG-GTGAGGT
15  --------------------------------------------------------------------------------
16  ----------------------------------AATTCTTGGCAAATAGTTCTTACCTCTAGCTTAGCAAA-TGAATCC
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------
19  ----------------------------------------------------------AAAAAACTTCGATT-CCATTAT
20  -----------------------------------------------------------------------T-AGGAAAT

  
0  TTTGCTGTCCAT________CAAGGTTTTCAGACCTTCAAATTTTAATTGACAAAGGACAGGAA__CTGGCTATGATTAT
1  ATAAGGAAATGC--------TTCAAATTTAACAAAATTACTTAGTTTTGTTTTTTGGAGCATTT--TTTATTTCTTTTGG
2  TAAATAAGTTTA--------AATTTATAAGCATAAGTTAGTATTTTAAAGATTTAATAAGATAA--TTTTGATTAAATGG
3  AACTTAATATAT--------TAAAAAAAATCTTAATATAGAGAAAAACAATTATAAAAATCTAT--GATAATATAAGTAT
4  GAGAAAAGCAAA--------ATATCTGAAAATATTACTAAAAAGCCTTGCACTTTTATTTAGAA--TGCTATAAGATAGT
5  ---AAAATAAAA--------ATAATTTGTGTTATGTTTCACCTTGTCAATCCTCCCTCTTTTCG--ATATAATTACTTTT
6  ----------------------------------------------ATTCTTTTCTCCTCTATG--TTATAATGTTCACC
7  TTCCTAGTCAATATAATTATCAAAAATTTCATAACTCCAATTTTTACCT-ACATATTATTGTAA--TAGTTCCTTAACAT
8  TTAAGTATAATA--------GAGATTTACTTAATAAATTATAAATTTTAAAGGTATTTAAGGAT--TATTTTTCTAAAAA
9  TAGAAAAGCAAA--------ATGTCTGAAAATATTACTAAAAAACCTTGCACTTTTATTTGGAA--TACTATAAGATGGT
10  TATTAATCCGTG--------GACAAACGTTGCCGTCCATGGATTTTTTTGTTGTGAAGGCTGTT--GAAAAATAAAATGT
11  TTTCATTATCGG--------AGTTTTTTTATTTGGATGAAAACATGAAAAAATTTATTGACTTT--TTTGAACATGGAGA
12  AATTTTTTGCGA--------AAATAAAAAAATAAATAGCACTAGCTATTGTAAATGTATATGCAATCTTG-TATAATTTT
13  CTAAATTTCTTG--------TGTATGGTAAGAAACTTAGGTTGATTTTACAAAAAGCCTTTTAT--ATAATTGATATCGT
14  GATTATTAAGTA--------TTGTCATTAATAAGGTTGTGAAAGATATGACTGAAAAGCGTGAA--ACAGATAATTGGAA
15  ----------------------------------------------------------------------------ATTT
16  ACTTTTTCCGAC--------AGTTAAACCAAACTTTTATGTTGACTTTCTTCATCCGTTTTTTT--ATAGTAAAGATTGT
17  -----------------------------------TACGGATGATGGTTTACAAAA-AGATGCA--CTTTCCGTTATCAT
18  ----ACATAAAA--------ATTTTTTGTGTTATATTTCACCTTGTCAATCCTCCCTGTTTTCG--ATATAATTACTTTT
19  CGGAGTTTTTTT--------ATTTGGGTGAAAACATTAAAAAATTTATTGACTTTTTT---GAA--CTTGGA--GAATAT
20  AATTATTATCCA--------TGGATAGGAGTTGCTATTCATGGTTTTTTTGAGTATTTAATTAG--TAAAAAAATAATCT

  
0  GTTAT__ACAAT___GATAATCATTTTCAATT__A_TA__GGAGGAACATG_____________________________
1  AGTAG--ATAAT---GATAATCAATATCAATT--A-TA--ATGACTTAGAAAGGTTATTTTTATACTTACAATAAAATTT
2  GTTAT--ACAATAATGATAATCATTTTCAATG--AGTA--AGATTTTATGTTAATATAGCATCATAGAAAACAAAAAAAC
3  GTTA---ACATTATTGATAATCATTTTCAATA--G-GA--AAAGAAAGTCAAAAGGGGGATTAACT--------------
4  TTTA---ATAAT---GATAATCATTTTCAGTT--A-GA--AATGATTGGTTGAATGTGGAAGGGGCCACCGGAT------
5  GTAACG-ATAAT---GAAAATCATTTTCAATT--A-G---GGAGGAAATACACA--------------------------
6  TAACG--ACAAT---GATAATCACTTTCAATT--A-GA--AAGTCAATGTTATCTTTAAGTGTTCCACATACTTTCATTA
7  -TTA-----AAT---CATAATTATGTA-AGTT--A-TA--TATGAGATAATAAGCTTAAGGATAAAATTTATATTAATTC
8  GGCGA--AAAAT---GATAATCATTTTCAATA--A-AT--GTGATTTAAATCATATTTTTAATATGAAAAATAGATTAAA
9  TTTA---ATAAT---GATAATCATTTTCAGTT--A-GA--AATGATTACTTCAATGTGGAAGGGGCCACCGGAT------
10  GGTTG--ACAAT---GATAATCATTATCAATT--A-AA--ATGATAGTTGACGTATGAATTTTACATAAACTTTTACTCC
11  ATATG--ATAAT---GATAATCATTTTCAATT--A-GA--AAGAGAGGTGGTTTGTGT----------------------
12  GGAAT--A-ATT---GATAATCATTTTCAAT------A--GGAGGAAATT------------------------------
13  ACTTA--ATAAT---GATAATCATTTTCAATT--G-AG--TCGAAAATAAACTAAGATATGAGGATTACGAT--------
14  AACTA--ATAAT---GATAATTATTTTCAATT--A-AA--CAAAAAGATGATTTAATTTCGCGCAAAATATTTCAAATAA
15  GTTAT--ACAAT---GATAATTAAGATCTAGT--T-TT--AAAACGTGTGGGAATTACAGGAGGAAGTAAT---------
16  GAACG--ATATT---GATAATCATTTTCATTT--A-TAAAGGAGTACAAACA----------------------------
17  --TAT--GAAAT---GATAATCATTTTCAATTGCA-TA--GGAAGGTGAGACGGT-------------------------
18  GTAACG-ATAAT---GAAAATCATTTTCAATT--A-G---GGAGGAAATACACA--------------------------
19  GATA------AT---GATAATCATTTTCAATT--A-GAAAGGAGGATGAATGGAAT------------------------
20  GTTGTTGACAAT---GATAATCATTATCAATT--A-AA--ATGATAATTAACGTATACTTTTACATAAACTTTTACTCCA

  
0  ________________________________________________________________________________
1  TAAGTAGATAATGCAAATAAAAAAGAATAAGGGAGG--------------------------------------------
2  ATTTGGAGGTTAAGT-----------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  TTGTTGGCAAACCGTCTATTCGAATCTTCCTTAATATATAATTAAGGAGACATTAAACACAATGATTGAAGATGTATAAT
7  AAAGAATAAACATAGGAAGTGATTAT------------------------------------------------------
8  ATTAAGGCATAAAATCTATTAGAAAAGTAAAGAATAAAAATAATTGAGTATTAACTTGAATTTTCTTAAGGAGGAATTTA
9  --------------------------------------------------------------------------------
10  ACAAATGTCTGTGGGGGTTTTTTATAAATAGATGTTTTTTAATAAAGAAGGGAGAGTTAAGA------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  AAATGATTGTAAAAAGGCAAAATACAAAATTTCACTTAACAACTAGTACATAAAGTAATACAATTAAATTAATTCTATCT
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------
19  --------------------------------------------------------------------------------
20  CTTGTGTTTGTGGGGGTTTTTTATAAATAGTAGTTTTTATTAAAGAAGGGAGATTTAAGA--------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  CTTGTATAGGAGTCTTTTTT------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  AAG-----------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  GAAAGATGTGTGGGGCATCGTTATTTTAGGTGGATATGAGCAATTTATTAAAAGTCATTTACGGAAAATATATATAGACG
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------
19  --------------------------------------------------------------------------------
20  --------------------------------------------------------------------------------

  
0  ___________
1  -----------
2  -----------
3  -----------
4  -----------
5  -----------
6  -----------
7  -----------
8  -----------
9  -----------
10  -----------
11  -----------
12  -----------
13  -----------
14  GGGTGAGTAAT
15  -----------
16  -----------
17  -----------
18  -----------
19  -----------
20  -----------