BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (- 3903828 to 3904128) circular

Islands  .G.C....CC.GC...C...CA.GA..GAGCA.AG.A.GGCACGA.A..G.GAAG.A...CACAA..AA.....ACGAA.
5'-   TGTCTTTTCCTGCTTTCTTTCATGATTGAGCATAGTATGGCACGATATTGTGAAGTATTTCACAATTAATTTTTACGAAT
          |         |         |         |         |         |         |         | 
          3904120   3904110   3904100   3904090   3904080   3904070   3904060   39
          |         |         |         |         |         |         |         | 
3'-   ACAGAAAAGGACGAAAGAAAGTACTAACTCGTATCATACCGTGCTATAACACTTCATAAAGTGTTAATTAAAAATGCTTA
Islands  ACAG,,,,GGACG,,,G,,,G.AC.AAC.CG.A.CA.ACCG.GC.A.AACAC..CA.,,,G.G..AA..,,,,,.GC..,

  
Islands  ....G.C.ACA.G..A.A.C,,,C.A...AAC.,,,,,,,.AG..GACG,,,,CGC.A.CA.GA...A.GA.G,,,GCG.
5'-   TTTTGTCTACATGTTATATCAAACTATTTAACTAAAAAAATAGTTGACGAAAACGCTATCATGATTTATGATGAAAGCGT
          |         |         |         |         |         |         |         | 
  04050   3904040   3904030   3904020   3904010   3904000   3903990   3903980   39
          |         |         |         |         |         |         |         | 
3'-   AAAACAGATGTACAATATAGTTTGATAAATTGATTTTTTTATCAACTGCTTTTGCGATAGTACTAAATACTACTTTCGCA
Islands  ,,,,CAGA.G.ACAA.A.AG...GA.,,,..GA.......A.CAAC.GC....GCGA.AG.AC.,,,.AC.AC...CGCA

  
Islands  A..C..AA.C.GAA.AAGCGGGA..G.GAC.GG.,,,GCAGGCAAGACC.,,,,...GCG.,,,.G,,,,,GGA.CGC.G
5'-   ATTCTTAATCTGAATAAGCGGGATTGTGACTGGTAAAGCAGGCAAGACCTAAAATTTGCGTAAATGAAAAAGGATCGCTG
          |         |         |         |         |         |         |         | 
  03970   3903960   3903950   3903940   3903930   3903920   3903910   3903900   39
          |         |         |         |         |         |         |         | 
3'-   TAAGAATTAGACTTATTCGCCCTAACACTGACCATTTCGTCCGTTCTGGATTTTAAACGCATTTACTTTTTCCTAGCGAC
Islands  .AAGAA..AGAC..A..CGCCC.AACAC.GACCA...CG.CCG..C.GGA....,,,CGCA...AC.....CC.AGCGAC

  
Islands  .G.CC...A..CG..GGCGAA....AGG.C......G...,,,.,,,,GGGGGAG,,,.AG
5'-   TGTCCTTTATTCGTTGGCGAATTTTAGGTCTTTTTTGTTTAAATAAAAGGGGGAGAAATAG
          |         |         |         |         |         |  
  03890   3903880   3903870   3903860   3903850   3903840   3903830   
          |         |         |         |         |         |  
3'-   ACAGGAAATAAGCAACCGCTTAAAATCCAGAAAAAACAAATTTATTTTCCCCCTCTTTATC
Islands  ACAGG,,,.AAGCAACCGC..,,,,.CCAG,,,,,,C,,,...A....CCCCC.C...A.C

IGR  -   3903828  3904128  ()  13  sacP sacA

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 - 3903828 3904128 sacP sacA [COG1264|COG1263 COG1621]
1 Listeria monocytogenes strain EGD B/C NC_003210.1 + 536079 536186 lmo0501 lmo0502 lmo0503 lmo0504 lmo0505 lmo0506 lmo0507 lmo0508 [COG3711|COG1762 COG0794 COG1762 - COG0036 COG1063 COG3414 COG3775]
2 Leptospira interrogans serovar lai str. 56601 chromosome I Sp NC_004342.1 - 3675426 3675557 LA3719 [COG1372]
3 Listeria innocua Clip11262 B/C NC_003212.1 + 523020 523127 lin0501 lin0502 lin0503 lin0504 lin0505 lin0506 lin0507 lin0508 [COG3711|COG1762 COG0794 COG1762 - COG0036 COG1063 COG3414 COG3775]
4 Streptococcus mutans UA159 B/C NC_004350.1 + 924028 924427 bglP [COG1264|COG1263|COG2190]
5 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 + 1551144 1551306 CAC1407 [COG1264|COG1263|COG2190]
6 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 + 862390 862626 CAC0743 [COG2723]
7 Haemophilus influenzae Rd P-g NC_000907.1 - 400908 400959 HI0379 [COG1959]
8 Lactobacillus plantarum WCFS1 B/C NC_004567.1 - 2803072 2803411 pts24BCA pbg7 bglG3 [COG1264|COG1263|COG2190 COG2723 COG3711]
9 Bacillus subtilis B/C NC_000964.1 + 3940601 3941027 sacX [COG1264|COG1263]
10 Bacillus subtilis B/C NC_000964.1 + 3534534 3535071 sacB [-]
11 Bacillus subtilis B/C NC_000964.1 - 4034397 4034778 bglP bglH [COG1264|COG1263|COG2190 COG2723]
12 Bacillus subtilis B/C NC_000964.1 - 4011360 4011654 bglS [COG2273]

0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  AGATTAGTTTCAGATTGAAGACAAACTTACTTGAGGTTTGTCTTTTTTCTTTTGCCTAAATCATGAAAAATTTTGTCT--
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  TAATAATCCCTCCAAATGATTAATTGAAATCTGATATTAATCATAAGAGATATA--------------------------
9  --------------------------------------------------------------------------------
10  TCCTCCACCTCCCATATCTCTGTACGTTACTAACCTACTAACGTTTCAAATATTTTGAAAAATCCTTCAGTTAGAGATCC
11  CGATTCATAACCTTGAT---------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  TTTTTAACCCATCACATATACCTGCCGTTCACTATTATTTAGTGAAATGAGATATTATGATATTTTCTGAATTGTGATTA
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  _____________________TGTCTTTTCCTGCTTTCTTTCATGATTGAGCATAGTATGGCACGATATTGTGAAGTATT
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  ---------------------TCTAAATGTAAGTTTACATTAGGCTGAATTTTAAAAATGATGGTCAACCTAAACTTACA
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  ----------------------------------------------------CTAAATTAGTCAGATAT-GT-AAGTATT
8  ---------------------AGAAACGGTGGATAGCAGTTTATGCAATGCTAAACGAAAAACAAGTAATTAAATAAAAA
9  ------------------------------------CCAAAAACCTTTAAGATTTGCATTCCAAGTCTTAAAGGTTTTTT
10  AAAAGGCAACTTTATGCCCATGCAACAGAAACTATAAAAAATACAGAGAATGAAAAGAAACAGATAGATTTTTTAGTTCT
11  ---------------------TGGAAAAAATGCCTTTCAAGGTTTTTAATTACAATAATTTTTTATTGAAGTTAATACTA
12  --------------------------------------------------------------------------------

  
0  TCACAATTAATTTTTACGAATTTTTGTCTACATGTTATATCAAACTATTTAACTAAAAAAAT_AGT________TG__AC
1  -----------------------------------------------CAATCTCCTTCTCAT-GTT--------GT--GG
2  --------------------------------------------------------------------------------
3  -----------------------------------------------CAATCTCCTTCTCAT-GTT--------GT--GG
4  TTAGGTTGGATTTTTA--AATAATAGTCGAGACTTTTGATTACCCT-TTTAATTTTTTATAA-A----------------
5  --------------------------------------------------------------------------------
6  GAAATAAAAGCTGCTGAGTTTAGCGGCTTTTATTGTAAATAAAGTTATTTGATAAACAAGGC-AGTGATTGACATG--AT
7  GCGCAATTAATTTTTAGGGATTCTTT------------------------------------------------------
8  ATTAAAAATAAGTCAATCATTCGGATGGTAGCTTGTTGGAAAGCTAAGACTATTCGATAGAC-AGT--------GG--AA
9  TCATTCTAAGAACACCACACACAACCTTTTTCCCATCCATTGTACAGGCTTTTCATACTATT-GCT--------AT--AC
10  TTAGGCCCGTAGTCTGCAAATCCTTTTATG-ATTTTCTATCAAACAAAAGAGGAAAATAGACCAGT--------TGCAAT
11  AGTTCAAATCTTTATGATTACTTTTGTTCTAGAAACGATAGTCAACACCAAAAATGAAAGCG-TTG--------AC--AT
12  ---------------------------------------------------------TGAGA-GCG--------CT--GA

  
0  GAAAACGCTAT__CATGAT_TTATGATGAAAGCGTA__TTCTTA_____ATCTGAATAAGCG_GGAT_TGTGACTGGTAA
1  AAGTGTTTGGA--GAAAAC-TTGTGATGAAAGCGCA--TTCTTA-----AGCACCGAACCCT-ATGC-TATAATTAGGCT
2  --------------------------------------------------------------------------------
3  AAGTGTGTGGA--GAAAAC-TTGTGATGAAAGCGCA--TTCTTA-----AGCGCCAAACCCT-ATGC-TATAATTAGGCT
4  -AAAGCGCTTG--CAAAAG-TTAA-ATAATCTGCTA--TAAT-------ATCTTTGTAAG----GAT-TGTTACTGGTCA
5  ----------------------------------------------------ATAAAAATTT-GGAT-TGTTACTGGTAA
6  TAAAATTCTAT--GATAACCTTATCATAGAATTAAA--TT--TA-----ATAAAAATAAG----GAT-TGTTACTGGTAA
7  --------------------------------------------------------------------------------
8  TAAAAAAATTTGACATTTT-TAATG-TAAAGGCTTACATTGTTATTTGTAGATAAATAAATT-AGACATGTAACTGGTAA
9  AGCCATGAACA--GCATAA-AATGAACGTTATTACA--GTTATC-----ACCACATATGGCG-GGAT-TGTGACTGGGCA
10  CCAAACGAGAG--TCTAAT-AGA--ATGAGGTCGAA--AAGTAA-----ATCGC-----GCG-GGTT-TGTTACTGATAA
11  CTCACGAATCT--AGTGCT-AAAGTATACCTACAAA--CAAATA-----AAACGACCCGTCA-GGAT-TGTTACTGCGAA
12  CATTTGTGTTT--CCTTGT-GTTCACTTTTTCTTAC--ATTCAC-----ATATGAAAATGGTAGGAT-TGTTACTGATAA

  
0  AGCAGGCAAGACCTAAAATT_TGC_GTAA___ATGAAAAAG_GA_____TCG_C____TGTGTCCTTTA___TTCGTTGG
1  ATCAAAGGGGGGAGACGC--------------------------------------------------------------
2  ----------------------------------------C-TT-----TAG-A----ATTTTAGTAAA---AAAGATAT
3  ATCAAAGGGGGGAGACGC--------------------------------------------------------------
4  TGCAGGCAAAACCTAGATGAATAC-GAAATAGATTGCAAAC-GA-----GTG-T----TTTGT--TGTA---TTTATTTG
5  TGCAGGCGAGACC-AAAATA-GACAGTAT---AAAATAAA---A-----T--------TATGCTATCTA---TGGGGTCT
6  TGCAGGCTATACCTAAGGAA-TGT-GTAG---A-GAATACT-CT-----AAT-A----CATTTCTTAGG---TATTTTTT
7  --------------------------------------------------------------------------------
8  TGCAGGCAGGATCTAAAAAA-GTA-ACGG---GCTTAGTCC-GG-----ATA-A----CTTTTTAGGTC---CTGTTTTT
9  GGCAGGCAAGACCCAATGAT-GCA-AAGG---GAGTATTAA-TG-----CCT-A----AAAAACAGGGC---ATTTTAAC
10  AGCAGGCAAGACCTAAAATG-TG---TAA---AGGGCAAAGTGT-----ATA-C----TTTGGCGTC-A---CCCCTTA-
11  AGCAGGCAAAACCTAAATGG-TGC---AG---GTGCAGGAG-GAGACTCTCG-CAATCTGTGTCATTTAGGTTTTTTTAT
12  AGCAGGCAAAACCTAAA--T-TGC----A---ATGAGTGCG-GA-----TCATC----TCTGTCTGTGC---T--GATGG

  
0  CGAATT__TTAGGTCTTT________TTTGTTTAAATAAAAGGGGGAGAAATAG__________________________
1  --------------------------------------------------------------------------------
2  AAGATT--TTAGATGTTT--------TTTGTTTAA-TAAAAGAGA-AGAAAAAACATGAGAATATTGACTTTTGTCTGTA
3  --------------------------------------------------------------------------------
4  GTATTTGTTTAGGTTTTT--------TCTATTTTAATGCCTCATAGGATAAGATTGTAGAAGATCAGAAAAAAGAAAGGA
5  CGCTTT--TTTTATATTA--------TTTATACTAATGAACTTATACATTATTCTTATATTTTATAAATCAAAAGAAAAG
6  ATAAAA--TCAGATATAT--------AAAATTTAGGAGGAATAACT----------------------------------
7  --------------------------------------------------------------------------------
8  TGTCGT--TAGGAGTGAT--------TAAG--------------------------------------------------
9  TCTTCT--TTTCGTGTTG--------GGCTCATAACGGCGCCTTGGACAACCCCCTATTCTCATGCTCCGTCGTCGACGC
10  CATATT--TTAGGTCTTT--------TTTTATTGTGCGTAACTAACTTGCCATCTTCAAACAGGAGGGCTGGAAGAAGCA
11  TCTCTT--TTAGGAGGTGATGCAGCATTTGATACAAAAAAAGCTGGTGAAAGGCGGCCACCTTTCATCCAGCAGTCCCCC
12  TAA--T--TTAGGTTTTT--------ATTTTTTTCAGAGGGAAGATGATGATAGTTACAGGATTCAAGTTAGTAAGATTC

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  TCATTCTAAACTGAGTATCATAAGAATAGAAATTATCT------------------------------------------
3  --------------------------------------------------------------------------------
4  GCCTAAA-------------------------------------------------------------------------
5  GAGAGATTATC---------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  GGGCATTTTTGTCATTTTCAGCCGGTATTTCTCACTTTTTTCATTTTGATTGTCAACTTTTCATTTGATACGATGAACAA
10  GACCGCTAACACAGTACATAAAAAAGGAGACATGAACG------------------------------------------
11  CATAAAAAGGAGGTATACAC------------------------------------------------------------
12  GATATTATCATTATTTTGACCGATGTTCCCTTTTAAAAGAATCATGTAAGATCAACATAGAAAACGCTTTCAATGAAAGG

  
0  ___________________________________
1  -----------------------------------
2  -----------------------------------
3  -----------------------------------
4  -----------------------------------
5  -----------------------------------
6  -----------------------------------
7  -----------------------------------
8  -----------------------------------
9  GCCGACTTTTCTTCAGCAAAGGAGGTTTTAATTGC
10  -----------------------------------
11  -----------------------------------
12  GGAATGCCAAT------------------------

Complementary Intergenic Regions

IGR  +  3903828  3904128  ()  11  ywcJ