BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (+ 3528916 to 3529160) circular

Islands  G.A..CA.AGCC..CAGCC..CCCGCGGC.GGC..CCCGCGCCCC...C.G..AA.GA..GGA..A.,,,,G,,,,CG..
5'-   GTATTCATAGCCTTCAGCCTTCCCGCGGCTGGCTTCCCGCGCCCCTTTCTGTTAATGATTGGATTATAAAAGAAAACGTT
      |         |         |         |         |         |         |         |     
      3528920   3528930   3528940   3528950   3528960   3528970   3528980   352899
      |         |         |         |         |         |         |         |     
3'-   CATAAGTATCGGAAGTCGGAAGGGCGCCGACCGAAGGGCGCGGGGAAAGACAATTACTAACCTAATATTTTCTTTTGCAA
Islands  CA.AAG.A.CGGAAG.CGGAAGGGCGCCGACCGAAGGGCGCGGGG,,,GACAA..AC.AACC.AA.A....C....GCAA

  
Islands  A..A...,,,,,..GC,,,,.AAGCCAA.AAG..C.C...AGAGAAC,,,,.CA.GA....CC.C.AA...AC.GCAC..
5'-   ATTATTTAAAAATTGCAAAATAAGCCAATAAGTTCTCTTTAGAGAACAAAATCATGATTTTCCTCTAATTTACTGCACTT
      |         |         |         |         |         |         |         |     
  0   3529000   3529010   3529020   3529030   3529040   3529050   3529060   352907
      |         |         |         |         |         |         |         |     
3'-   TAATAAATTTTTAACGTTTTATTCGGTTATTCAAGAGAAATCTCTTGTTTTAGTACTAAAAGGAGATTAAATGACGTGAA
Islands  .AA.,,,.....AACG....A..CGG..A..CAAGAG,,,.C.C..G....AG.AC.,,,,GGAGA..,,,.GACG.GAA

  
Islands  CCC..A..A....,,,....A.,,,GAACG,,,,,..CC..A.AA.GAACG,,,.AACGACAGGAA.AGAGGAGAA...C
5'-   CCCTTATTATTTTAAATTTTATAAAGAACGAAAAATTCCTTATAATGAACGAAATAACGACAGGAATAGAGGAGAATTTC
      |         |         |         |         |         |         |         |     
  0   3529080   3529090   3529100   3529110   3529120   3529130   3529140   352915
      |         |         |         |         |         |         |         |     
3'-   GGGAATAATAAAATTTAAAATATTTCTTGCTTTTTAAGGAATATTACTTGCTTTATTGCTGTCCTTATCTCCTCTTAAAG
Islands  GGGAA.AA.,,,,...,,,,.A...C..GC.....AAGGAA.A..AC..GC...A..GC.G.CC..A.C.CC.C..,,,G

  
Islands  A.A..
5'-   ATATT
      |
  0   3529160   
      |
3'-   TATAA
Islands  .A.AA

IGR  +  3528916  3529160  ()  13  slr

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 + 3528916 3529160 slr [COG1396]
1 Leptospira interrogans serovar lai str. 56601 chromosome I Sp NC_004342.1 - 3895970 3896468 LA3924 [COG0451]
2 Clostridium tetani E88 B/C NC_004557.1 - 2506466 2506591 CTC02367 [-]
3 Mycoplasma penetrans B/C NC_004432.1 + 97182 97918 MYPE830 [-]
4 Clostridium tetani E88 B/C NC_004557.1 - 638150 638578 CTC00612 [COG3591]
5 Clostridium perfringens B/C NC_003366.1 + 894613 894763 CPE0720 [COG0628]
6 Sulfolobus solfataricus A NC_002754.1 - 2462791 2462909 SSO2710 [COG0457]
7 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 Fus NC_003454.1 + 1109734 1109814 FN0464 [-]
8 Mycoplasma pneumoniae B/C NC_000912.1 + 215868 215988 MPN162 [-]
9 Campylobacter jejuni P-e NC_002163.1 - 193624 193685 dapB purF [COG0289 COG0034]
10 Ureaplasma urealyticum B/C NC_002162.1 - 37616 37718 UU034 [COG2865]
11 Borrelia burgdorferi plasmid lp36 Sp NC_001855.1 + 20170 20388 BBK32 [-]
12 Thermoplasma volcanium A NC_002689.2 + 1578383 1578465 TVN1495 [COG0644]

0  ________________________________________________________________________________
1  TTACTTTTGCACATATACAAAACTTGTAAACTTCCCAAAATCTGATTTTGAACTTTCTGAATATTTATGAGGGTGTTGTT
2  --------------------------------------------------------------------------------
3  TTATTTATTGTTTTATTTAATGTGTATATCTAAAGAAATAGGAATCTCCTATTTCTTTTTTTATTGTTTTCACAAACTTA
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  ACATGTAGGG----------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  ACTTTTAGAAAGTTGTCAATTTTGCGTTTTTTAAGAGATTGTCTTAAAACTTAAAATGTGGAAACTCTTACAATTATCTA
2  --------------------------------------------------------------------------------
3  ATTATGTGAAATTTTGGTTTTG----------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  AAAGGGTAACTTTTCTAAAGAGACGTAATCCGTGGGAGCTAACACGTTTTGTTAAAACTTGCAACAAAGGATTTCTATTC
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  ATTGGACCGGAGAATTTTTGAGACCTATAAAAAATGGGTTTTCCATTTGATGAATGTCACAAAACAAAGATTTTATGCAA
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  _______________________________________GTATTCATAGCCTTCAGCCTTCCCGCGGCTGGCTTCCCGCG
1  AAAGCTGACTATACGAGCATTTATTTTAGATTTTATAAAGATTGCTTTTAAAAAGTAGAATCAAAAATCTCTACCAATAG
2  -----------------------------------------------------------------------------ATA
3  ---------------------------------------AAACAATTGATTAGCAAAATTAATTCCTGATTTATTTGAGA
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  ---------------------------------------TGGAATTTGAAAAATAAATGGTTATCTTAATATTAATATAG
7  --------------------------------------------------------------------------------
8  -----------------------------------------------------GGTTCTTTTAAGTAGTCTTTTTAGGGT
9  --------------------------------------------------------------------------------
10  ---------------------------------------------------TCAATATAAATTCATACTTTTTTAAAACC
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  CCCCTTTCTGTTAATGA__TTGGATTATAAAAGAAAACGTTATTATT________TAAAAATTGCAAA_____ATA__A_
1  CTTGCATATATTAATTA--AT--ATTAGAAAATCAATATTTATTAATATAATAAATAAACTTTAGAAA-----ATA--A-
2  AGGTCTTCTTTTAT--A--CTTAAGTATAAAAGAAGACCTTATTATT--------TGGAATTTTAAAATTGCAATG--T-
3  GATTTGCTTGTGAA--A--TAAGATTATCAAAAATAAAGATAGTAGT-----------AAATTGATTA-----ATT--A-
4  ---------ATTTCCTC--CTTAAACTTATCTGTATTAACTATGTTT--------TATCTATTCCATA-----ATATAA-
5  --AGAAGTACATATTCT--ATTAAGGATAAAAGAAAATGTTATTAAC--------AAAAAATT--AA-------------
6  AAATTGAAGACATAAAA--CTAGTGAACAAAAGAAAACGTTATTAAA--------TAAGGGAAGTTAA-----TGA--A-
7  -----TTTGGTTATGGAGGTAGGATTATAAAAGGAAACTTTATT--T--------TAAAAATTA-AAG-----ATA--G-
8  AGAAATTAGTTTCCAAA--AACGGTTTTAAATTAGAGGCTTATT-TT--------TAAAAATT-CAAA-----ATA--A-
9  -------------------------------------TTTTATTATT--------TAAAATTTACAAA-----ATA--AA
10  TTAATGCAAAATTATAT--AAGTATTATAAAATAACA---TATTATT--------TTAAATTTTAATG-----GAG--G-
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  _GC______CAATAAGTTCTCTTTA__GAG_AACAAAATCATGA___TTTTCCTCTAATTTA_CTGC___ACTTCCCTTA
1  -TA-------AATTATTTATATTTAAGGAG-AACAAAGAA----------------------------------------
2  -GT------CAAAAA--TCACTCTA--ACG-AATAGTATATATT---ATAAACACAAAAGAA-AACA---ATAAATA---
3  -AC------TTTTATAAT-TGTTTA------AAAACTTTTATTT---GTTAACTCTAAATT---TAA---AAAACCATTA
4  -TT------TCTGAATTTAATTATA--TATTAACACTTACTTGAAATTTTTCATATAAATAT-TATT---AATTACCT--
5  ---------CAATATGGTATATTTA---AG-TAGATATAAGTTA---TTTTCAT-TAAT--A-ATAA---A--------A
6  -GA------GGAG-------------------------------------------------------------------
7  -TT------ATAATGAAGAAAGTTT--TGA-AGAA---------------------------------------------
8  -GC------AAATATAATTAAACCG--TCT-TTTATCTGAATAT------------------------------------
9  TGCTAAAATCAATATTTTATTTTCA--AGG-AAAAAG-------------------------------------------
10  -TT------AAAGTAAATTAAG----------------------------------------------------------
11  ----------------------------------------TAAA---AAGTACTTTGTTCAC-CCTC---TTGATAGCAC
12  ------------------------------------------TA---ATTTTTAAAAATTTATCTCCCAAACTTCTAT-A

  
0  TTATTTTAAATTTT_AT_AAAGAAC_GAAAAATTCCTTATAATGAACGAAATAACGACAGGAATAGAGGAGAATTTCATA
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  GCACTAATACTGTT-ATTAAAAAAC-TTAAAGTAAATGAT--TTAAGGATATTATTTGTTTGTGTTATTGCTAAAATTAA
4  --ATTTTAAATTTT-AT-AAATATCTGAAAAATACTCTATAAATAAGTAATCAAATTTATAAATTCAACATAATGTAAAT
5  TTATTTT----TTT-GA-AAAGAT--GAAAAATATCTTAAAAT-AAGGAAGTGAAAAT----------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  TTATTTTAAATTTTTAA-AAAGAAA-GAGAAATTCAATGAATTGAT--AAATAATAGTAAATATTAGTTTAGTATTATTA
12  TTTTATTAAATTTT-AT-AAAGATT-TATTAATCTTCGATCAATAAGATTTT----------------------------

  
0  TT______________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  TCCCCATTTTTTTTATTTACTATCAACTAGGGGTGGGGAATTAACTTTGCCGAAAAGGTGGGGAATTAACTTTACCGAAA
4  ATAGAAACATTATTTTCACACAATAAATAATTTGAAATTTAATTTTCTGAAAGTCTATACCATAATTTTGAATAAAAGTA
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  CAATTAAAATTGTAATAATTTTGCCTCTTTTTGATAAGAAAAGTTTATTAATTTTTGGAATCCGACTTAAAATGATTTAA
12  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  GGTGGGGAATTAACTTTACCGAAAGGTGGGGAATTAACTTTACCGAAAAACATTTAATCTGTAATAAAAGCTAATTAACA
4  TGTACTTTGCTTTATATTTATGGTATATTCTATATATAGAAATATTTCAAATATTCTAAATATTTCTATAACAACTTAAT
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  AGTTAGTATTAACTTTAAAGGAGAGAAAGC--------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  TTGTTTTATTGCAGATTAAAAAATATTAATAGTACATTTAATTAAATGCTCTCTTCTTTTGGAGAGTGTTTTTTATCCTT
4  TGTTGTTCATAATATTAACCATCTTATCTTAAATATATGGTTAATTAAAATATTATAAAAAGGGGGACAAGAT-------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  AAAATATTAACTATCTGTTAATGATTGGATTTTTTATCTGTATAAAAAAACAGACGATTTCTGTTTAAGTAGAATATTTA
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  AACAGAAAAATAAGAACATAAATAATGATTTAATGGAATGAATTTTTAAGAAAATATTCTAACTATAAATACAATATAAA
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  ____
1  ----
2  ----
3  TATT
4  ----
5  ----
6  ----
7  ----
8  ----
9  ----
10  ----
11  ----
12  ----

Complementary Intergenic Regions

IGR  -   3528916  3529160  ()  11  yveK yveL