BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (+ 3187119 to 3187483) circular

Term (98.73)%  -------GACCGGTTAACGCCGGTC-------------------------------------------------------
Islands  .G.,,,,GACCGG..AACGCCGG.C......GCG....ACCC.CCCC.....C.C.AA.CCCCG..A.C......C.GG.
5'-   TGTAAAAGACCGGTTAACGCCGGTCTTTTTTGCGTTTTACCCTCCCCTTTTTCTCTAATCCCCGTTATCTTTTTTCTGGT
   |         |         |         |         |         |         |         |        
   3187120   3187130   3187140   3187150   3187160   3187170   3187180   3187190  
   |         |         |         |         |         |         |         |        
3'-   ACATTTTCTGGCCAATTGCGGCCAGAAAAAACGCAAAATGGGAGGGGAAAAAGAGATTAGGGGCAATAGAAAAAAGACCA
Islands  ACA....C.GGCCAA..GCGGCCAG,,,,,,CGC,,,,.GGGAGGGG,,,,,GAGA..AGGGGCAA.AG,,,,,,GACC,
Term (94.24)%  -------CTGGCCAATTGCGGCCAG-------------------------------------------------------

  
Islands  ..,,,,...,,,..GAC,,,CAC.AG,,,CAGGAG.,,,..C..GAG.G..CAA...CA.ACAG.C.C....ACCGC..A
5'-   TTAAAATTTAAATTGACAAACACTAGAAACAGGAGTAAATTCTTGAGTGTTCAATTTCATACAGTCTCTTTTACCGCTTA
   |         |         |         |         |         |         |         |        
   3187200   3187210   3187220   3187230   3187240   3187250   3187260   3187270  
   |         |         |         |         |         |         |         |        
3'-   AATTTTAAATTTAACTGTTTGTGATCTTTGTCCTCATTTAAGAACTCACAAGTTAAAGTATGTCAGAGAAAATGGCGAAT
Islands  ,,....,,,...AAC.G...G.GA.C...G.CC.CA...AAGAAC.CACAAG..,,,G.A.G.CAGAG,,,,.GGCGAA.

  
Islands  A.C,,,CACGAACGGGGGAACCAACGA..GGC.G....A..AACAGCC..GGGG.GAA.C..AC.AAG.AAGAGGGGG.A
5'-   ATCAAACACGAACGGGGGAACCAACGATTGGCTGTTTTATTAACAGCCTTGGGGTGAATCTTACTAAGTAAGAGGGGGTA
   |         |         |         |         |         |         |         |        
   3187280   3187290   3187300   3187310   3187320   3187330   3187340   3187350  
   |         |         |         |         |         |         |         |        
3'-   TAGTTTGTGCTTGCCCCCTTGGTTGCTAACCGACAAAATAATTGTCGGAACCCCACTTAGAATGATTCATTCTCCCCCAT
Islands  .AG...G.GC..GCCCCC..GG..GC.AACCGAC,,,,.AA..G.CGGAACCCCAC..AGAA.GA..CA..C.CCCCCA.

  
Islands  C.C.GAA.CCC.AA.CCGACAGC.AACC.CG.AGGCG.A.ACAGAGAGGAGG.C.A..A.CGGCCA..C...GCAA.GG.
5'-   CTCTGAATCCCTAATCCGACAGCTAACCTCGTAGGCGTATACAGAGAGGAGGTCTATTATCGGCCATTCTTTGCAATGGT
   |         |         |         |         |         |         |         |        
   3187360   3187370   3187380   3187390   3187400   3187410   3187420   3187430  
   |         |         |         |         |         |         |         |        
3'-   GAGACTTAGGGATTAGGCTGTCGATTGGAGCATCCGCATATGTCTCTCCTCCAGATAATAGCCGGTAAGAAACGTTACCA
Islands  GAGAC..AGGGA..AGGC.G.CGA..GGAGCA.CCGCA.A.G.C.C.CC.CCAGA.AA.AGCCGG.AAG,,,CG..ACCA

  
Islands  C......G...C,,,,,CG..AA..CAC.AAGGGAGA.A.GAACA
5'-   CTTTTTTGTTTCAAAAACGTTAATTCACTAAGGGAGATATGAACA
   |         |         |         |         |   
   3187440   3187450   3187460   3187470   3187480   
   |         |         |         |         |   
3'-   GAAAAAACAAAGTTTTTGCAATTAAGTGATTCCCTCTATACTTGT
Islands  G,,,,,,C,,,G.....GCAA..AAG.GA..CCC.C.A.AC..G.

IGR  +  3187119  3187483  ()  14  yuaA yubG

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 + 3187119 3187483 yuaA yubG [COG0569 COG0168]
1 Streptococcus mutans UA159 B/C NC_004350.1 - 1211147 1211284 SMU.1280c [COG0596]
2 Vibrio vulnificus CMCP6 chromosome II P-g NC_004460.1 - 1567933 1568169 VV21421 [-]
3 Corynebacterium efficiens YS-314 Act NC_004369.1 - 943973 944491 CE0894, similar to AX133781-1|CAC38957.1| percent identity: 71 in 195 aa [-]
4 Oceanobacillus iheyensis B/C NC_004193.1 + 1705639 1706303 OB1662 OB1663 OB1664 [COG0569 COG0168 COG0168]
5 Pseudomonas putida KT2440 P-g NC_002947.3 - 4292585 4292831 PP3761 PP3760 PP3759 PP3758 [COG0642|COG0784 COG1352 COG2201 COG0784|COG0642]
6 Corynebacterium glutamicum Act NC_003450.2 - 868382 868937 Cgl0819 [-]
7 Listeria innocua Clip11262 B/C NC_003212.1 + 774412 774537 lin0752 lin0753 lin0754 lin0755 [COG0346 COG0346 COG0400 COG1853]
8 Streptomyces coelicolor A3(2) Act NC_003888.1 - 5004063 5004916 SCD16A.01 [COG3953]
9 Mycobacterium tuberculosis H37Rv Act NC_000962.1 - 965534 965980 Rv0867c [-]
10 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 + 1074336 1074640 xylR [COG1940]
11 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 + 3232008 3232214 CAC3081 [COG3773]
12 Bacillus halodurans B/C NC_002570.1 + 632136 632506 BH0597 BH0598 [COG0569 COG0168]
13 Bacillus subtilis B/C NC_000964.1 + 485510 485984 ydaO [COG0531]

0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  TTTTAAAATCGAATACAAAAGTGGCCTCTCCTTGGGTTCCAGCATCAGCGTTAGAGTAACAACAAAAATCCAGACAACAA
3  GTGCCCTCACCACTTTCTTCCTCAAAAAAACCAACCACTAGCTAAAAGTACGAAGAGACTATTATACACCCCACCCGGTG
4  GTCATGCGTTGACAATCGAGTTAGACGATCTACATTAATAAGAAACATTAAACCTTTATATGAAATATCATCATAACTAT
5  --------------------------------------------------------------------------------
6  TTGTCCTCACCACTTTCATTCCTAATTCATATGCTGATTCAAATTGATCAACTATTTTTGACCAGAAGAAATTATTATAC
7  --------------------------------------------------------------------------------
8  GAGGGGTCTCCTGTCTGCTGGTGTCTACTGGCGATTACCTGGTTTGTCGATAGGTCGCTGCCACCACTCAAGTCAGCGTA
9  GGCCATGTGACATTACCCACATAACGGAACGATAACGGGGCGGACACGCTCCGATTGCGAGGGCTTACTACCTGCGCAAA
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  GCGCTAAAATCCTTCCGGAAACCGGCTTAGTTACGAAAAGATCCATTTTGTGACATACATCATACACCCCTCGACCATCG
4  ACAAAATTATTTACTCCATACTAATATTGTATGATTAAGAACTGCTTCTAAAATAACTTCGTATATCCTGGTGAACCTCC
5  --------------------------------------------------------------------------------
6  ACCGCAAGCATCGCGGTAAAAATTTCCCGGAAAGTTACATCGCTACCCGAAATATTCCAAATATGTAACATAAATCACAC
7  --------------------------------------------------------------------------------
8  TCCGGTCACGTTTCGATCACCGCTAGCGCCCACCGTTACAGGCTGGTCGGTATCGGATCATGAACGGTATGTTTTTGATC
9  TGCCTATATTTCTTGGCGTTCTTGCCGGCGATTGTGACGGAAACGCCGACTTTTCTTAAACGTGA---------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  GGGTGACCTGCACAAATTCCACCTCCGCGACCCCCGGTTTGGTGAAGAACGGATAAAAAACGTGA---------------
4  TAATAATCGGGGGTTCACCAATTTATTCTTCATAAATAAAGAGTCTAATCCATTTTCTTTTTTCTATCTTTTTTCTATGG
5  --------------------------------------------------------------------------------
6  CCGATGATTCAGGCGGGATGACCTGCGACTTCAAGGTCGCACCAAAGTCAGATTGATATAGATTTCGTAAATAACGTGAC
7  --------------------------------------------------------------------------------
8  AGGTGATATGAGCAGATTTTGATTGATATCGCCAGAGGGGACGAGCCGGAGCCGGAGGGCGAACGGGCCGGAGCCGCCAC
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  TTTTGCAAAAGTAGTAAATAATCTATTTAAAAAATATTATAGATAAAGTAGAATCGTAGATGCTTTTGATTTTAATT---
5  --------------------------------------------------------------------------------
6  ACAATCGTGACCTTC-----------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  CAAAGACCCCATCACTCCTCCCAACGGCCCGCACTTCGAGAACGTCACCCGATCGACACGCCCACCCCTTCCTTATTCGC
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  TCCCCCTCCGCCGCCCTCTCCCCTTCCCCGCTTCCCACCCCTCCCCGCCCGACACCCGAAGCCGTCCCCACCCGCAGCCC
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  ATTGGCGCCCAGTTGGGGTTAATGCCCCATTTGCCGTGCTTGTTGAAGCCAGTGAGTTGGCTCACTCCGGGCGACCCGCA
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  _______________________________________________________________________________T
1  --------------------------------------------------------------------------------
2  -------------------------------------------------------------------------------A
3  -------------------------------------------------------------------------------C
4  -------------------------------------------------------------------------------C
5  --------------------------------------------------------------------------------
6  -------------------------------------------------------------------------------G
7  --------------------------------------------------------------------------------
8  GGCAACCCGACCGGAACCTGTGCCCTCCCTTTGCCCCGCAAGCCAGTTGGGGATTGGCAGCAGCAAAGGATCAAGAGCCT
9  -------------------------------------------------------------------------------C
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  GTAAAAGACCGGTTAACGCCGGTCTTTTTTGCGT___TTTACCCTCCC___CTTTTTCTCTA_ATCCCCGTTATCTTTTT
1  --------------------------------------------------------------------------------
2  AGCTTATCAGTAAATAACTCAGTTATGACTCTCT---TTCTGCCTATC---AGTTCCCTTCT-GCCTATCACAATCTTTA
3  ACAATCGTGACCTTCCGATTACGGTGTCCCTCAG---GCATTGCAACA---GTTCGCCGAAT-CCGGCTCATCGCCAAAC
4  CACTTATTATATATATAGTAATCGATGTAAGCCA---TGAAAGGTTAT---TATATTAGAAT-TATCTGTGTATTTAAAA
5  --------------------------------------------------------------------------------
6  GGTTACCGTGTATCCCAGGCACCGCAACAGTTCA---TCTGCAAGTCC---GGCTCATCGCC-AAACCCTGTCTGGGGTC
7  -----AGAGCGCTTAACGGCGCTCTTTTTTGCGTACATTAAAAGTTACTTACTTTTTGTGAGCATAAAACTTTTCTTTTT
8  CATAGGCCTCAGAACAAGGTCAACAGGCACGTTG---GGTGATTCCTG---CACTTGTTCCG-GACATGTGCTCTCGCAT
9  GGAATCGCCTGAAACCGCTACCGTCTCGGGAGGC---TCGTCAACCTA---ACCCAAAATGA-CGTGCCCTCCCTCGCCG
10  ---------------------------------------------------------------AAAGTTTAAATAAGGGG
11  --------------------------------------------------------------------------------
12  ---TCCCTTTTAGAGGGGCCGTTTAGCAGCGGCC---TCTTCTCTTTC---ATTTTATTAGG-GCTAAGAGGGCAGCCAA
13  --------AACAGAGGCGATTTTAGCCTCTGTTT---TTTTATTTTTG---GTAAGTAAATT-CCATTTGTGGAACCTGT

  
0  TCTGGTTTA_____AAATTTAAATTGACAA_ACACTA_GAAACAGGAGTAAATTCTTGAGTGTTCAATTTCATACAGTCT
1  --------A-----TAATTGGCTCCTTTTT-GTTTTT-TACCAAACATTTCTGGACAAAATGTTCAATTTCATACAGATT
2  CGAACAAGC-----TTCGGTAACTTG-CAA-ACACTATGAAACAGGAGTAA-TACTTATTCGGTTGTTATGAGATATATA
3  CCTGTCTGG-----GGCCGGAGGGGAACAC-ACCGCA-GATGCATCAGACCTACAAACCACACACGCTTCTACCTTGTAG
4  GTGGATTGA-----CATTATTATTATTCAA-GAGTAA-ATTCAATATTAAAACCAAATATGACGCCTTTTTAGTCGCTGA
5  ----------------------------GG-TTCAAA-TCCTGTACAAATGAGTGTCTTTAATCTGTGTACCGCGCGGCA
6  GGAAGTTGA-----ACAACCTCCTTGGTGC-AACAGA-ACTTTAAACCACAAACTCCCGCATTCATGTGGGCCATATTGC
7  AATAGTTTAGTTATAAACTATAGTTAGTAA-TCA--A-GAAGGAGGTACAAACAA-------------------------
8  ACGTTCCCG-----GCCTGTCGGGTGGACG-CCGAAT-CCTGCCACCGCCCGTCGCACAGTCATCCATCCAACAAACTCG
9  ATAGCACGC-----CGAACTCCATCCAGTG-GGCGAG-GGATTCCGACCGCGGATGGAGGCGGGGGACCCACCAGGTCCG
10  AGAAAAGTA-----AAATTTAAATTGACAA-CTAATT-TTTAAGGTGTTAACACAAAGCTATGGTAGTTACATAAGAATA
11  ------------------TAATTTACCTCT-TATAGG-ACTAATTTCAATGCTTTTAGATTTTTTATATTTAAATGAATT
12  GTTTATCTA-----AAAACAATATTGACAACACCCTT-TAAG-AGGAGTACATTTATGAGCGAAAACATAAAAAGATACT
13  CATTTTATT-----TTTTTCTCTCAGCCAA-TAAGCC-TCTTTACAACGTGCGGGAACGGGAGTATGATCTCTTTTAGAA

  
0  C_______TTTTACCGCTTAATC__A__AACACGAACGGGGGAACCA_AC_GATTGGCTGTTTTATTAACAGCC_TTGGG
1  A-------TAAGAATTTATGGCT--T--GTTTGTCAAGAAGCTTCCT-TC-TATACTGTGATTATCACATGATA-AGGAG
2  A-------GGATATTGTT--------------------------------------------------------------
3  A-------AGACTTGCAGACAGG--G--ACGGGGAACCCACCTGCCC-AC-CGCGGGCACCGGAGGTAACT-CC-TTGGG
4  A-------ACTGTTGCTTTAGTA--T--TGTGCAGTGCGGGGGACCC-AT-TTTTGGCAATAAAAC-ATTTGTC-TTGGG
5  T-------CAGAAGTTCCCGAGG--A--TACCGCTCCATGCAAATAG-AT-GGAACGATTGCCGAACGCTACCT-TCAAA
6  A-------GACAGGGACGGGGAA--A--CCACCCACCATCTTTTCAC-AA-AAGAAGGCATGGAGGCCAACTCC-TTGGG
7  --------------------------------------------------------------------------------
8  C-------AGGCAGGAGCGGGGG--A--CCCAGGTAAGTCGCCGCAC-CG-GTCACCACCGGAGCGGCTCGGGG-TGAAG
9  C-------CGAGATCGGACCGGA--G--CCGCATACGGCTCCTTGGG-GT-GAAGCCAACGTCGTTCGCCGATG-TACGA
10  A-------TATGTTTTGACTGAC--T--AGAAATACTAGAGGTCAAG-CT-TTATTAAATAAAGCTTGACCTCT-TTGTT
11  T-------TTTTCATAATCTTGT--G--CATAATATCATTAGCCTAA-AT-TTTAAAAACGGGGAAACCAATTT-TTGGG
12  CGTGCACCTTTAATCGCTGAATC--TCTATTGAGAGCGGGGGAACCATAC-C--TGACAGAGTTGTTT-CTGTC-TTGGG
13  A-------ACAAATCGCTTAATCTGA--AATCAGAGCGGGGGACCCA-ATAGAACGGCTTTTT--------GCCGTTGGG

  
0  GTGAA_____TC____TTA____CTAAGTAAGAGGGGGTACTCTGA_AT_C__CCTAATCCGACAGCTAACCTCGTAGGC
1  AAATG-----TT--------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  GTGAA-----GCCGAAGTT----CTCCTTCGGCAGGGCACATCCTC-CG-C--CCTAACCCGACAGCTAACCTCGACGGC
4  GTGAA-----TC----TAA----ATATTTA-GAAGGGATACTTTAT-GT-C--CCTAATCCGACAGCTAACCTCGTAAGC
5  TACTG-----GC----TCA----ATGCCCTGCCAGACCCGTCAAAG-CT-G--GTTAGACTCGCATATCAGGACAGGCAG
6  GTGAAGCCAGAC----ATC----CACTGGCAGAGCAACTCCTCCG-----C--TCTAACCCGACAGCTAACCTCGACGGC
7  --------------------------------------------------------------------------------
8  CCGTA-----CC----CGT----CAGGGCACGGCCGGGCACCTCCC-CG-C--CCGAACCCGACAGCTCACCTCGCAGGC
9  CCGCG-----GC----CGG----GTGATCCTCTCCACGGCGAATCC-AA-C--CCGAACCCGACAGCTGACCTCGTAGGC
10  TTTTA-----TA----TGG----AAATGCGAAGAAGAAGAGTTTTT-TC-G--ATTTTTAAAAAATTTGATAATTTGAAT
11  GTGAA-----TC----GCA----TAATATATGCGTAGGTT-TGTGC-CT-TTACCGAATCCGTCAGCTAACCTCGTAGA-
12  GTGAA-----TC----TTATGTTTTTTATAAGAAGGGATACTCTCC-AT-C--CCTAATCCGACAGCTAACCTCGTAAGC
13  GTGAA-----TCC---TTT----TTAGGTA---GGGCTAACTCTCATATGC--CCGAATCCGTCAGCTAACCTCGTAAGC

  
0  GT__ATAC_A_GAGAGGAGGTCTATTATC____GGCCA__TT_CTTTGCAATGGTCTTTT_TTGTTTCAAAAACGTTAAT
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  G---ACAG-ATGAGAGGAC-------------------------------------------------------------
4  GTC-ATAG-G-GAGAAAAGGTCTTATTTCTA--GACCA--TTTCTTTGTAATGGT-TTTT-TAATGTCAAAGGAGTGGTG
5  TG--GCAG-A-TAACAACAACGACGGATC----GGCCA--CT-CTTTTCAATGGACTTTT-CTAGCTCGGGCGTTTTCTC
6  GA--CAAA-T-GAGAGGAAAACTTTTC-----------------------------------------------------
7  --------------------------------------------------------------------------------
8  GT--AAGG-A-GAGGGACACCGC---------------------------------------------------------
9  GT--GTAC-C-GAGAGGAATTACCTAACG----T----------------------------------------------
10  AG--TTAC-A-ATTGAAAATTAGTTTCAA----AATAA--AA-TACTATTTTAGCATATA-CGATTTTGTATTGAAAAAG
11  ----ATAA-A-AGGAGGAAGATTA--------------------------------------------------------
12  GTTGATTCGA-GAGAGGGTCTCGATTTTTTCAAGACCATCTT-CTTTGAGGTGGTCTTTTATTGGTGCGATGGGAGAAAA
13  GT---TCG-T-GAGAGGAGATGAATGAAA----CCTGT--GT-TCGATGTTATGGCACAG-GGGCATCCGTTTGCCTCTG

  
0  TCACTAAGGGAGATATGAACA___________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  AAA-----------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  GTATAGGTGGTTATGGGA--------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  GGAGCTCAAG----------------------------------------------------------------------
13  TGTTTTTTGTTGTTCATTTTTGAATGCAAATCGCATACAGAGACATCATAGCAGAAAGGACTATCATCAACATGTGAGAG

  
0  _________________________________________________________________
1  -----------------------------------------------------------------
2  -----------------------------------------------------------------
3  -----------------------------------------------------------------
4  -----------------------------------------------------------------
5  -----------------------------------------------------------------
6  -----------------------------------------------------------------
7  -----------------------------------------------------------------
8  -----------------------------------------------------------------
9  -----------------------------------------------------------------
10  -----------------------------------------------------------------
11  -----------------------------------------------------------------
12  -----------------------------------------------------------------
13  CAAGACACTGATGGATGTTTTATTGTTTTAATTGAAAAATGAGAAATTAAAAGGGGAAGACATCG