BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (- 3137049 to 3137176) circular

Islands  G...C..CAGCAACC...C.GA.GCAAG.A.AAG,,,,,,,,CACAGA..G,,,,G..AA.CAA.AA..C..A.CGG,,,
5'-   GTTTCTTCAGCAACCTTTCTGATGCAAGTATAAGAAAAAAAACACAGATTGAAAAGTTAATCAATAATTCTTATCGGAAA
        |         |         |         |         |         |         |         |   
        3137170   3137160   3137150   3137140   3137130   3137120   3137110   3137
        |         |         |         |         |         |         |         |   
3'-   CAAAGAAGTCGTTGGAAAGACTACGTTCATATTCTTTTTTTTGTGTCTAACTTTTCAATTAGTTATTAAGAATAGCCTTT
Islands  C,,,GAAG.CG..GG,,,GAC.ACG..CA.A..C........G.G.C.AAC....CAA..AG..A..AAGAA.AGCC...

  
Islands  ,G.A.G..A.AA.G,,,..ACA.....,,,,,,GGGGAGAG.GCCA..
5'-   AGTATGTTATAATGAAATTACATTTTTAAAAAAGGGGAGAGTGCCATT
        |         |         |         |         | 
  100   3137090   3137080   3137070   3137060   3137050   
        |         |         |         |         | 
3'-   TCATACAATATTACTTTAATGTAAAAATTTTTTCCCCTCTCACGGTAA
Islands  .CA.ACAA.A..AC...AA.G.,,,,,......CCCC.C.CACGG.AA

IGR  -   3137049  3137176  ()  12  ytjB

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 - 3137049 3137176 ytjB [COG1854]
1 Staphylococcus epidermidis ATCC 12228 B/C NC_004461.1 - 504257 505010 SE0511 SE0510 [COG0697 COG0780]
2 Streptococcus agalactiae B/C NC_004116.1 + 1400763 1400917 SAG1392 SAG1393 SAG1394 SAG1395 [COG1120 COG0614 COG0609 COG0609]
3 Thermoanaerobacter tengcongensis strain MB4T B/C NC_003869.1 - 411246 411450 Icd [COG0538]
4 Streptococcus pneumoniae B/C NC_003028.1 - 2135039 2135261 SP2215 [COG0052]
5 Listeria monocytogenes strain EGD B/C NC_003210.1 + 482702 483165 lmo0449 [-]
6 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 Fus NC_003454.1 + 985142 985431 FN0354 [COG0697]
7 Oceanobacillus iheyensis B/C NC_004193.1 + 3041625 3041746 OB2938 [COG0364]
8 Staphylococcus epidermidis ATCC 12228 B/C NC_004461.1 - 1408782 1409003 SE1374 SE1373 [COG0205 COG0469|COG3848]
9 Listeria innocua Clip11262 B/C NC_003212.1 + 486480 486658 lin0466 [-]
10 Borrelia burgdorferi Sp NC_001318.1 + 171098 171211 BB0169 [COG0361]
11 Staphylococcus aureus subsp. aureus N315 B/C NC_002745.1 + 479468 479683 cysM metB [COG0031 COG0626]

0  ________________________________________________________________________________
1  TGAATCACCTTCTTTCGTCAACCATTGATTCAGCCAAAAGTAGATTAGAAATGATTAAATATCTTTAATATAATTTAAAT
2  AAAAAGCTAAACAATAATGATTATTGATACTA------------------------------------------------
3  GAGCTCTCACCTCTTTTACACGGGATAACACACTCTGCCCATATGGTAGCAAATTGATATGTTTAGGTCAAGCACTGAAA
4  TTTACAGA------------------------------------------------------------------------
5  GAGGTGGAAAAATGAAAAAAACAATAAGATGGAGAAACTCTTACCAACCAGAACCTTATTTTACAACTACGAAACTATGG
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  TTTTGTATAGCTATTAGTCTAATTGTTAGGCTTTTAGCTCTTTTTTTTATGTTGTAATAAAAATTACATTTTTAAAACGT
9  TTAAGTGGAGCGGCTAATCTACAATATTAAAGCAGATTGGTCGTTTGCTGTGTGGC------------------------
10  --------------------------------------------------------------------------------
11  TATATAGAAGCATCTGACACACAAGTATTTGTGTTGCTCAGGTGTTTTTTTGTTTGGAATTGAA----------------

  
0  ________________________________________________________________________________
1  CATCTACTTATAAAAACAGTTGAAAATAGTTACTTTTACGTAAAATTTTTTCAATCTGTAAATAGCCTTTAAAATATATA
2  --------------------------------------------------------------------------------
3  GTTTGAACAATG--------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  ATTTTGTTGCATATCATCTCTCTGGAATTAGAAGATGATATGCAAGAAATCGAACCAGAGAAAAACTACCGTGAAAAACA
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  TTACAT--------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  AATAACCACAATATATAGTGGTTAAAACTTAAATTTGCACTACATGATAAATTATCTTTTTAGTAGGGTTTTACTATAAT
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  AATATAAAAAGACGAGCTTCATTTTAAAAGGTTGACTGAGCCATTTTGACACTAAACTAGTGACAGAATGGCTCATTATA
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  TGCAATATTTTCGAGATAAAAGTAGTGTCAAATTGCATTAAAATGATTAAATTCTACAACGTTAAATTCTCAGCTAAACA
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  TTGTTTAAAGATATTTTACATAAGAGTAATTAATCTTTTAGTTTTCTAAAAACTGCCTTATGTTAATAAAGTGGATGGTT
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  CTATATATAGTGTTTGCATTTCTAATTTGATACTATATTCTGTGTTTCATTATACATAACTCATATCACTAATGAAAGTT
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  TTAACTAACAATAAGGTTT-------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  _____________________________________________________________________________GTT
1  AAAAATTGATGGCAGAAACAACCTATCATTTGGAAAGTGCATCACTACGAGATTAGTGTCATTATTTTAAAATAAAAAAA
2  -----------------------------------------------------------------------------TTT
3  -----------------------------------------------------------------------------AAT
4  -----------------------------------------------------------------------------GGG
5  -----------------------------------------------------------------------------GCC
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  -----------------------------------------------------------------------------CTA
9  -----------------------------------------------------------------------------TAA
10  --------------------------------------------------------------------------------
11  -----------------------------------------------------------------------------AAG

  
0  TCTTCAGCAACCTTTCTGATGCAAGTATAAGA_AAAAAAAC_ACAGATTGAAAAGTTAATCAATAATTCTT______ATC
1  TTTTTTTGAGTGTCTTTACTTGCTTTTCTATT-GAAATTAG-ACATATAGG---GTTAA--AAGAATAGTT------A-C
2  TGAATCATTCCAAATAATTATCATTTTGTTCA-CATTTTTC-TTAATTAATGCTAAAAAAGGCTTTTGTAA------GTC
3  ATTGCAAAAACCCCTTATATTCTA-TATAATAGAATCAAGC-TGTGATAAAAAATCG---CAATAAAGCAT------TTT
4  ACTCGAATAGAGCCCTCTTTTCAGGTTTTACC-GTGACAAT-CCCTATTAAAAATTATATCAAAATAGCTTGAAAATATT
5  AGATTAAGACGAAATATTGTCACAAAATAATA-GTAAAGA--AGTGATAGACTTGTTT-TAAATTTCTTTT------TTC
6  ------------------------------------ATCCT-TTAAGATTATACAATATTTTATTTAAGAT------TTC
7  ---TTACGGTGAAAGAAGTTAATATATTATAG-TTCATATG-TTTGGTACGTGTTTATCTTTTGGATTATA------ATG
8  TGAATTGTCTTTCTTTTAATGGAACGTTAAAA-AAATTTAT-GGTAATTTAGAGTTGAAG--ATAAATCTA------GTT
9  CTTTAGGTGGAAAATTGTCACAAAGTACAGGG-AGAGAATTGACAGGCTG----GTTT-TAAATTTCTTTT------TTC
10  --------------------------------------------------------------------------------
11  TTAGTACTGGTTCTGAATTAATCGAAACTTAG-ATAATTGC-AAAATAACAAAATGTCGTTTATAATTCTT------ATC

  
0  __G_GAA_AAGTATGTTATAAT_____GAA____ATTACATTTTTA__AAAAAGGGGAGAGTGCCATT____________
1  --G-TAA-ATTTCTACAATAACAGATATAA----ATTACATTTTTA--AAAACATGATTCTAGCTTTTTATTAAATTGCG
2  --T-TTT-TTCTATGTTATAAT-----GAA----CTTAATTTTTTGCTAGAAAGGTTCTCT-------------------
3  -----AA-AA--ATTTTAT--T-----G-------TTACATTTTAA--ACAAAGGGGAGAAGAAA---------------
4  --G-GAA-AAGTATGGTAGAAT-----GAA----AATTGTCGTGTG--AACGATAATACTCATTCTTGATGAATTGTGAA
5  --G-CTTCACATAGATTATAAT-----GAA------TACATATTTT--AAAAAGGGGTGAGACGCTTC------------
6  --C-ACT-TTTTATGTTAAAAT-----GAA----TTTATATTTTAT--TAAAAGGGGACAGAGAAAAATGGATTTAAAAG
7  --T-GAA-ATGTCT--TACAAT-----GAA----ATTATATTTTGA--AAAAGAATTGAGGAAATTAACG----------
8  AAG-GAA-AGGTATGTCGTCAT-----GAAGAAGATTGCAGTTTTA--ACTAGCGGAGGAGATTCTCCGGGT--------
9  --GCGTC-ACATAGCTTATAAT-----GAA------TACATATTTT--AAAAAGGGGTGAGGCGCTTC------------
10  ----------GATACCTCCCTA-----TAA----ATTACATTTTTA--AAAAACTTCGTGTAATTATATACACAATTTCT
11  --T-GAA-AAGTAAGAATTAA--------A----ATTGAGACATGA--AGAAAGGTTTCATTCATTTGATCGGCATGTCA

  
0  ________________________________________________________________________________
1  CATAAGAAATAACAATCTTTAAAAGCGAACATTTGTTCGTTTTTTATTATAGCTCGTTTCCATTGAATTATCAAGAACTT
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  GCAGTTGCCCTTGGGTCGTTTTGCGAGTTGAAGTCAAGAAGAGGAAAAAAACAAAAAGGAGAAATACTC-----------
5  --------------------------------------------------------------------------------
6  AAATATATATAAAATTAACAGCAAAAAAATGTGCTTTTATTGCAATCTTTTTTTGGGCAACAGCTTTTGTCTTAACAAAA
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  TATAATGTAAACAAAAAATAATGCTTTTATTCTTAAAAAGAATAATTGAAATGAT-------------------------
11  GATGAGGGTGCATCT-----------------------------------------------------------------

  
0  ________________________________________________________________________________
1  ATGCATAGTTAGATTTTATATGCTAATATAATGTCGTTAATCATATAATATTGAGGCG----------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  GTTGTTTTAAAAGAAGTTGATGTGACAACACTTGGAGTTCTGAGATACTTTTTTGCTTCTATTATAGTTATTTTTATTTT
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  ____________________________
1  ----------------------------
2  ----------------------------
3  ----------------------------
4  ----------------------------
5  ----------------------------
6  AATAAAGAAAAAAATTCCTATCCCAGAA
7  ----------------------------
8  ----------------------------
9  ----------------------------
10  ----------------------------
11  ----------------------------

Complementary Intergenic Regions

IGR  +  3137049  3137176  ()  5  ytjA