BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (- 3034511 to 3034804) circular

Islands  AA.G.GAC.CC.CC...GG....A.....G.GG,,,,.,,,,,CCG.C.GC.C.A..CGACCA.GCACA....G....CA
5'-   AATGTGACTCCTCCTTTGGTTTTATTTTTGTGGAAAATAAAAACCGTCTGCTCTATTCGACCATGCACATTTTGTTTTCA
      |         |         |         |         |         |         |         |     
      3034800   3034790   3034780   3034770   3034760   3034750   3034740   303473
      |         |         |         |         |         |         |         |     
3'-   TTACACTGAGGAGGAAACCAAAATAAAAACACCTTTTATTTTTGGCAGACGAGATAAGCTGGTACGTGTAAAACAAAAGT
Islands  ..ACAC.GAGGAGG,,,CC,,,,.,,,,,CACC....A.....GGCAGACGAGA.AAGC.GG.ACG.G.,,,,C,,,,G.

  
Islands  .G.A.CC.CGC.CCAGCAGCAGAGAG..ACACGA.ACACC..A..GA.AAGGAAC,,,,.G,,,,CA.AGAAGC.GAAC,
5'-   TGTATCCTCGCTCCAGCAGCAGAGAGTTACACGATACACCTTATTGATAAGGAACAAAATGAAAACATAGAAGCTGAACA
      |         |         |         |         |         |         |         |     
  0   3034720   3034710   3034700   3034690   3034680   3034670   3034660   303465
      |         |         |         |         |         |         |         |     
3'-   ACATAGGAGCGAGGTCGTCGTCTCTCAATGTGCTATGTGGAATAACTATTCCTTGTTTTACTTTTGTATCTTCGACTTGT
Islands  ACA.AGGAGCGAGG.CG.CG.C.C.CAA.G.GC.A.G.GGAA.AAC.A..CC..G....AC....G.A.C..CGAC..G.

  
Islands  ,,,,GGC.GCAA.A...CACAC,,,GG.CA..A.A.AA...A...G....GAAG.CAACCA..CC.CCA..A..GC..CA
5'-   AAAAGGCTGCAATATTTCACACAAAGGTCATTATATAATTTATTTGTTTTGAAGTCAACCATTCCTCCATTATTGCTTCA
      |         |         |         |         |         |         |         |     
  0   3034640   3034630   3034620   3034610   3034600   3034590   3034580   303457
      |         |         |         |         |         |         |         |     
3'-   TTTTCCGACGTTATAAAGTGTGTTTCCAGTAATATATTAAATAAACAAAACTTCAGTTGGTAAGGAGGTAATAACGAAGT
Islands  ....CCGACG..A.,,,G.G.G...CCAG.AA.A.A..,,,.,,,C,,,,C..CAG..GG.AAGGAGG.AA.AACGAAG.

  
Islands  CCG...A.GA.A.AA.,,,C,,,,,..AG.GG.,,,C....AGG.GA.,,,,,C
5'-   CCGTTTATGATATAATAAACAAAAATTAGTGGTAAACTTTTAGGTGATAAAAAC
      |         |         |         |         |         
  0   3034560   3034550   3034540   3034530   3034520   
      |         |         |         |         |         
3'-   GGCAAATACTATATTATTTGTTTTTAATCACCATTTGAAAATCCACTATTTTTG
Islands  GGC,,,.AC.A.A..A...G.....AA.CACCA...G,,,,.CCAC.A.....G

IGR  -   3034511  3034804  ()  14  ytrP

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 - 3034511 3034804 ytrP [COG2199]
1 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 Fus NC_003454.1 + 1505297 1505392 FN0847 FN0848 [COG0457 -]
2 Streptococcus agalactiae B/C NC_004116.1 - 1911855 1911948 SAG1926 [COG2508]
3 Streptococcus agalactiae B/C NC_004116.1 + 202373 202541 SAG0184 SAG0185 [COG1380 COG1346]
4 Oceanobacillus iheyensis B/C NC_004193.1 - 2240592 2240955 OB2204 [COG2199]
5 Pasteurella multocida P-g NC_002663.1 + 237942 238417 ygiX ygiY [COG0745 COG0642]
6 Yersinia pestis strain CO92 P-g NC_003143.1 + 1883233 1883772 YPO1655 [COG1278]
7 Listeria monocytogenes strain EGD B/C NC_003210.1 + 1163997 1164244 lmo1131 lmo1132 [COG4988 COG1132]
8 Listeria innocua Clip11262 B/C NC_003212.1 + 1117769 1118017 lin1097 lin1098 [COG4988 COG1132]
9 Listeria innocua Clip11262 B/C NC_003212.1 + 1338960 1339051 lin1342 [COG4224]
10 Bacillus subtilis B/C NC_000964.1 - 1535157 1535340 cad [COG1982]
11 Campylobacter jejuni P-e NC_002163.1 - 1603904 1603982 cysQ [COG1218]
12 Borrelia burgdorferi plasmid cp26 Sp NC_001903.1 - 19322 19430 BBB22 [COG2252]
13 Staphylococcus aureus subsp. aureus N315 B/C NC_002745.1 + 2005327 2005697 SAS058 SA1753 [- -]

0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  TATTTACCTCATTGTTATTACAAGTTATCCATGCCTTGTAAGCCCATTGATGACATTTTCCATATGCCAGTTTTCAATGG
6  GGTGTCAGCCTTATTTTTGTTATGTCTGAGGAGACGATTTTATTTGGGTCAGTGATAAGCCTGAATGGGCTGGATTTTCG
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  TATTTCTATAAAATTTGATTTATCAATATATTTTATTATTAGATTAAA--------------------------------
13  AATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAA-------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  TGTCGGGAAAAATTCCCTTTTAAGCAGGAATGGCTCTCCTTTCTTTTCTCTGCTTAAATGCGCCGAAGAGAACATCATTT
6  GTGGCAACTCATCATAGCAAACTCAATAGATAAACTTTCAGCGCCTCTCTGTAAACAAGATGTCCAGAATGTGATCTGTC
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  TGGCTACTTAATGTGGAACCTCCTCTCTCACACAGAAGCCAGTCCCTATCCCTATGATCATTCGACATATAGCGCACTGG
6  GCACATGTCAGCTATGAGAGGCCAAAAAACGCAGGGCGCACTACGAAGAGATAACAATTTAGAGGATTATGCCGTATGAA
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  TTTTCCTTAATCATGGCGTTATGCTGGGATTAGTCGAAACAGGAAATCCATTTCTTACAACATTTTTTTACTTTTTTTGT
6  GATAAGGGGAAAAGTA----------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  GATTGACTGATAAAAGTGCGGTCAGTTTTTTGAAAAGTAGGTTGAGATTAAGACTTCCTTAATCTTTGTCTGCTAGATTA
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ____AATGTGACTCCTCCTTTGGTTTTATT_TTTG_TGGAAAATAAAAACCGTCTGCTCTATTCGACCATGCACATTTTG
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  ----AGGTCATTTCCTCCTTTATATGTTTTATTTG-CATAAAATAAAACGAGCGTGATCGTTTCGT---TGTCTATTTTG
5  AGGTCATGGAGAATGGGGATTTTCTTTATT-TTTG-TGTAAAATAAGAACAAGTTTTGAAAAAAGTGCGGTCAAAAAA--
6  ----CATTAATTGACTCCTTTGGTTTTATT-TTAG---GCATATAAACAAGAATATTCAGTTTGGTTACTAAAAAGAGTT
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  ----------------------TTAAAATT-TTTG-TGGAAATTAAAAATTCCACAAAATCTTCTTGTATAATTTTAAAA
12  ----ATCCAATAAATAGCGTTGGTTTTATT-TTTGATATAAAATAAAATTTGAGGAGTAATTTGTA--------------
13  ----TACCTCATATAAAATAAAATTTTAGG-GACT-TTTTAGGGACTTTAAATTTAAAATTACAAGTTTAATAGAAACAT

  
0  TTTTCATGTATCCTCGCTCCAGCAGCAGAGAGTTACACGATACACCTTATT________GATAAGGAACAAAATGAAAAC
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------AAGTGCTTTTGCGAACTTC--------CCTTTGTTGTTTAGAAGCTTG
4  TTTTCATGTACCATCGCTCCAGCAGCAGAGAGTTACACGATACACCTTCTTATCGATTGGATAAGTAAGGAACAAAATAG
5  --------------------------------------------------------------------------------
6  GCTATTAATACTCGCTCATGAGTTAATGCGTCTCGGCCTGTGGTACAGACC--------TATTTATGCACGACATCTTGA
7  ----------------------------------------------------------------------------CTGA
8  ---------------------------------------------------------------------------CTGAA
9  --------------------------------------------------------------------------------
10  -------------------------------TTTCTTCACTCCTTGTAGAT--------TTACTTCCCTTAAGAGAAAGC
11  AATCTTATAGAAAGTTTATAATC---------------------------------------------------------
12  --------------------------------------------------------------------------------
13  CAAAATAATCACATGTTTGTGTGGAATGTACACCCCAAAAGCTAGACTGAA--------AAATCTATTTTTTGAGGTGTA

  
0  ATAGA_AGCT__GAA_CAAAAAGGCTGC___AATAT_TTCACACAAAGGTCATTATATAATTTATTTGTTTTGAAGTCAA
1  ------------------------------------------------------AATATAGAGGGAGTTATTGTAAATAA
2  -------------------------------------------------CAGAAATTTTCTGAGGAGACATTCTCCTCTT
3  AATTT-GCAA--TTC-GGCTTCTTTTTT---TGGTA-ACTGAGACTAAAAATGAAAACGTTTTATTTGTTTTGAAGTACA
4  TTGCA-AGCGTCGATGCACTTAGGCTACCTAATTAT-TTTACACAAACTACAGTATATAATTTATATATATCCATGTCAA
5  --------------------------------------------------------------------------------
6  GTAAA-GTGG--TTC-ATATTTAAAGCG---TTATC-GTTGATAGCTCTTCACTGACGAATTTCCTTCATAGTGCCTCCA
7  ATACC-TCCT--TGT-GATTTAGTTTTA---GTATA-AACTATGTGGTTACCACGCAGTCAAATAAAAAATAAATGACAA
8  AACCT-CCTT--ATG-ATTTAGTTTTAG---TATAA-ACTATGTGGTTACCACGCAGTCAAATAAAAAAACAAATGACAA
9  --------------------------------------------------------------------------------
10  ATCTTCATTT--GAT-CATAAATTGTTC---TTTACATTCTTTCAA-GTTCATAATATAATTCATTTGTTTT-ACGTCTA
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  TTTTT-ATAG--GTA-AATATAATAAAT---TAGAG-TAGACAACTCAGAATTCCAATTTTATAATAATATTGCTTGACA

  
0  ___CCATTCCTCCATTATTGCTTCACCGTTTATGATATAATAAAC_AAAAAT_TAGTGG___TAAACTTTTAGGTGATAA
1  ---ATTAAAGACAATAATTCCCTTATT-TTTATGATATAATAAAATAAAAAT-TAGT-----TAAATAAAT-GGAGATTA
2  ---TTTCTGTGCTCAAAAAGAGGTTATAAATATGATATAATGAAC-AAAACTGTAGTGG---AGGATGCC----------
3  ---ATATAGCTATCAATAAAACAAGTTAAAACATTGTAATAAAAG-GAAGGG-GTAGTG---ACT---------------
4  TAGCCATAATAAAAGTAATAATT-----TTCTTGGTATAGGAAAA-TTTGAC-TAGTTGATGTATAATTATAGTAGAAAA
5  --------------------------------------------------------------------------------
6  ---TAAGTAACGACTGATAACCGGCTATAACACGCCCATGGCGGC-AAAATT-TTTTAA---TAAAGGAAATACAC----
7  ---TGAGAATCATTATCAAATGATGATTTTTGTGATATAATAAAC-AAAGAT-TTATTG---ATGGGGGTTAGCAATCAA
8  ---TGAGAATCATTATCAAACGCTGATTTTTGTGATATAATAAAC-AAAGAT-TTATTA---ATGGGGGTTAGCGATCAA
9  -----------AAACGATTTTAGTATCGTTTATGATATAATAAAG-AAAGTA-GCGATT---TAGCTACTTTCTTATTTT
10  ---AAAAACGGTTGAGAAACTGATTTTAATACACACTATTATGCA-TAGGTA-TGATTA---CAAAGGTGGGAAAACAA-
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  ---TATCAAACTAGATAGTACTATTTTGAATATATTATTATAATC-AAAAAT-TCATTG---TAAACTTTTAGACAAAAG

  
0  AAAC____________________________________________________________________________
1  A-------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  TAATCGATTTGGTGATTTAATTTTAAATAATTCGTTTAGCTATGAAGAAAAGGTGATTATT-------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  ATGGGAAAAGTAGTATTAAATATGGCTCATACTGCCAAAAAATCAAAGAAAGTATTAAGGTATCTTGAAACGAACCTTGA
8  ATGGGAAAAGTAGTATTGAAAATGGCTCATACTGCCAAAAAATCAAAGAAAGTATTAAGGTATCTTGAAACGAACCTTAA
9  AATATAATGAAGAAAAGGATGAAGTGTG----------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  GAAGTAATAAAAAC------------------------------------------------------------------

  
0  ____________________
1  --------------------
2  --------------------
3  --------------------
4  --------------------
5  --------------------
6  --------------------
7  TGTAACTCGGGGGAAGTACA
8  TGTAACTCGGGGGAAGTACA
9  --------------------
10  --------------------
11  --------------------
12  --------------------
13  --------------------

Complementary Intergenic Regions

IGR  +  3034511  3034804  ()  8  rpsD