BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (- 286975 to 287052) circular

Islands  .A.GA..CAC.CC...ACA..A....GA.G,,,,,CCCA.,,,.,,,CAA.AGAA.,,,,G,,,,,GGAGA.GGGAG.
5'-   TATGATTCACTCCTTTACATTATTTTGATGAAAAACCCATAAATAAACAATAGAATAAAAGAAAAAGGAGATGGGAGT
    |         |         |         |         |         |         |         |     
    287050    287040    287030    287020    287010    287000    286990    286980    
    |         |         |         |         |         |         |         |     
3'-   ATACTAAGTGAGGAAATGTAATAAAACTACTTTTTGGGTATTTATTTGTTATCTTATTTTCTTTTTCCTCTACCCTCA
Islands  A.AC.AAG.GAGG,,,.G.AA.,,,,C.AC.....GGG.A...A...G..A.C..A....C.....CC.C.ACCC.CA

IGR  -   286975  287052  ()  11  pcp

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 - 286975 287052 pcp [COG2039]
1 Streptococcus agalactiae B/C NC_004116.1 - 1881743 1881796 SAG1900 [COG3444]
2 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 Fus NC_003454.1 + 698650 698744 FN0062 [-]
3 Bifidobacterium longum NCC2705 Act NC_004307.1 - 669500 669695 ilvC2 [COG0059]
4 Vibrio vulnificus CMCP6 chromosome I P-g NC_004459.1 + 898567 899096 VV10889 [COG0174]
5 Clostridium perfringens B/C NC_003366.1 + 1298012 1298198 CPE1095 [COG4974]
6 Aquifex aeolicus Aq NC_000918.1 + 1139416 1140006 aq_1625 aq_1627 pol [COG1235 - COG0258]
7 Streptococcus mutans UA159 B/C NC_004350.1 - 1320783 1320860 SMU.1392c [COG0456|COG0454]
8 Bacillus subtilis B/C NC_000964.1 - 496113 496202 ydbD [COG3546]
9 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 + 2017675 2017789 CAC1870 [-]
10 Listeria innocua Clip11262 B/C NC_003212.1 + 588402 588452 lin0560 [-]

0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  GTTGACATT-----------------------------------------------------------------------
3  CGATGTTCACAACGTGAAAACCCCTAATTCCACTAAGTGAACCCCTACAGGGCTTTTCCGATGCGACGGGACTAAACCTG
4  GGATTCTGATTCACTTGTTTAGACAATATTACTCAAACCGCTCACTTTTTAAACAAAGCCCGGTTTGATTAAA-------
5  AATATATTTGGTATAAATTAGATATATGGTAATTTATATAATTATACTATAACAAAAATGCCAATAAAC-----------
6  GATTATAT------------------------------------------------------------------------
7  A-------------------------------------------------------------------------------
8  TTCCCATCTCGATA------------------------------------------------------------------
9  TATCATATTTTTTTATATATCATTTAGAAAAATTTTCTAA----------------------------------------
10  --------------------------------------------------------------------------------

  
0  ____________________________________________TATGATTCACTCCTTTAC_ATTATTTTGATGAAAAA
1  ---------------------------------------------------------------------GAGTATTTTAC
2  --------------------------------------------TAAAAAATTTTACTGTACTATTATAGTAATAAAAAA
3  CATATCGGAAAAGCCCACAAGGAAAGCCACAACAGAATATCGCTCAGCGAAACCCCGCAGAA-CGCAAGAAAAATTCAAC
4  --------------------------------------------AAAACGGCCATAATGTAC-CAGATTTTGATAAAAAA
5  --------------------------------------------ATGAATTGAGGCCAATAA-ATAATATTGATGAAAAA
6  --------------------------------------------TAATATTTTTCTATTCGC-ATTATTTTTATGAAAAA
7  --------------------------------------------AAATAGAAGAGGTAGAAG-CTAGACAGCTGCTTTTT
8  --------------------------------------------CGCTGACGCTGTTTTTCG-TTTATCTTTCTATCGAT
9  --------------------------------------------TTTTTGCATTCATAAGTA-AACTTTTTACTTTATAG
10  -----------------------------------------------------------------------AAAAAGCTA

  
0  CCCATAAA_____TAA___ACAATA___GA_ATAAAAGAAAA__AGGAGATGGGAGT_______________________
1  TAACAAAA-----TAA---ACAATA----A-ATAATAGAAAACGAGGAGGTCAGAA------------------------
2  AT-ATAAA-----TGTTTGGGAATA---GA-ATAAAAGAAAA--ATTATTAAGGAGGAGATT------------------
3  CCCATAAA-----TAA---ACAAAT---AA-ATAAAAGGAGC--GTCAAAA-----------------------------
4  CCCAGAAA-----TAT---GTGATC---TA-TTCGTGAGTAT--TTTTCTTTTATTGACGCTAATCGCCCCTCTTCAACC
5  CCAATAAA-----TAA---TTAAAT---TT-ATAGAGTTATA--AAACACTTCTTGTTAATTAGTTTTTTGCTAATTAAT
6  CCC-TAAAGGAGGTAA---GTGCTATGGGA-CTTAAAGTTAG--AGTAGATCAGGACACCTGCACCGCTTGCGAGCTCTG
7  GATACTAA-----GTT---TCAAAA---GATATAAAAGAAAA--AGGAGACTTCT-------------------------
8  CGGAAATA-----TAA---A-AAGA---GA--TAAACGAAAA--AGGAGATGGGTAC-----------------------
9  TGCATACA-----TAT---A---TA---CC-ATAAAAGAAAA--AGGAGATGTTATT-----------------------
10  ATCTTAAA-----TAA---ACAATA---AC-ATAACAGAAAA--AGGAGAATAATA------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  CCAACCATTTCTCGAGCCGCCTCACTCTATCAAGCTTTTATGCAAAGATGAGCACACGATCGTTGACAAAAGCAACAAAC
5  AGGAGGTGTTTTTTATT---------------------------------------------------------------
6  CTACGATAGAATCCCCGAAGTCTTCAAGAACGCGGGAGACGGAATAGCGGACGTAGTCAAGTGCGACATCGAAGACGACG
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  AGGGGCGAAATGGATCGCGCTTATGATTCACAATGGTGCAACGAACATTAATTCGCACCATTAAGGTGCACTCAAGGATC
5  --------------------------------------------------------------------------------
6  AAGGATGCTGGATGATCGTTCCCGAAGGACTCGAAGAGGAAGTACAGGAAGTTGCAGACGAGTGCCCCAGCGGATCCATA
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  ATTTTGGTGCACAAAGGAAGAGCGGATGCACACAAAACAAAGCAAGTGCATGATTAATATGGACTTAAAAAATTGGCACG
5  --------------------------------------------------------------------------------
6  ATCGTAGAGGAAGAATAATCTTTTCCTTCCCCTCTTTTTCATAAATCTTTTTTCTTTTTCAAAGGAGGTCTGAGCCATGG
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  CTTTTAGCTTTGTAAGAATCAGCATCGATTAATAAGAATGAAATGAAATTAATCAATGCTGGATTCCAAACCGAATCTGA
5  --------------------------------------------------------------------------------
6  CAAAATTAAAGACCATGGTTGACCAGGAAACCTGTACGGCTTGCGAGCTGTGTTACGATAGAGTTCCCGAGGTTTACAAG
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  CTATTACCGCTTTAATAACACTGGAGGTTATCCAAG--------------------------------------------
5  --------------------------------------------------------------------------------
6  AACAGGGGAGACGGAATAGCGGATGTTGTCAAGTGTGACATAAAAGACGAGGAAGATCACTGCTGGATGATAGTCCCGGA
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------

  
0  ___________________________________________________________________________
1  ---------------------------------------------------------------------------
2  ---------------------------------------------------------------------------
3  ---------------------------------------------------------------------------
4  ---------------------------------------------------------------------------
5  ---------------------------------------------------------------------------
6  AGGACTGGAAGACGAAGTCAGAGAAGTAGAAGAAGAGTGCCCCAGCGGTTCTATTATCGTTGAAGAACTCGAAGA
7  ---------------------------------------------------------------------------
8  ---------------------------------------------------------------------------
9  ---------------------------------------------------------------------------
10  ---------------------------------------------------------------------------

Complementary Intergenic Regions

IGR  +  286975  287052  ()  2  ycbU