BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (- 2821999 to 2822165) circular

Islands  GGA.AACCGCA.AACG,,,,,GCAC.CCA.G.CAGGG.GC......CC.A..G....GCA...A....A.A.AA.A...G
5'-   GGATAACCGCATAACGAAAAAGCACTCCATGTCAGGGTGCTTTTTTCCTATTGTTTTGCATTTATTTTATATAATATTTG
       |         |         |         |         |         |         |         |    
       2822160   2822150   2822140   2822130   2822120   2822110   2822100   28220
       |         |         |         |         |         |         |         |    
3'-   CCTATTGGCGTATTGCTTTTTCGTGAGGTACAGTCCCACGAAAAAAGGATAACAAAACGTAAATAAAATATATTATAAAC
Islands  CC.A..GGCG.A..GC.....CG.GAGG.ACAG.CCCACG,,,,,,GGA.AAC,,,,CG.,,,.,,,,.A.A..A.,,,C

  
Islands  GC.A...GAAC..C.GC.C...ACA.C...CG.......C..GA.AG.,,,C.ACAA.ACAG...ACA....,,,,,,GG
5'-   GCTATTTGAACTTCTGCTCTTTACATCTTTCGTTTTTTTCTTGATAGTAAACTACAATACAGTTTACATTTTAAAAAAGG
       |         |         |         |         |         |         |         |    
  90   2822080   2822070   2822060   2822050   2822040   2822030   2822020   28220
       |         |         |         |         |         |         |         |    
3'-   CGATAAACTTGAAGACGAGAAATGTAGAAAGCAAAAAAAGAACTATCATTTGATGTTATGTCAAATGTAAAATTTTTTCC
Islands  CGA.,,,C..GAAGACGAG,,,.G.AG,,,GC,,,,,,,GAAC.A.CA...GA.G..A.G.C,,,.G.,,,,......CC

  
Islands  .GA..CC
5'-   TGATTCC
       | 
  10   2822000   
       | 
3'-   ACTAAGG
Islands  AC.AAGG

IGR  -   2821999  2822165  ()  13  relA

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 - 2821999 2822165 relA [COG0317]
1 Wigglesworthia brevipalpis P-g NC_004344.1 - 315063 315191 Wbr0308 [COG2823]
2 Thermoanaerobacter tengcongensis strain MB4T B/C NC_003869.1 - 2374771 2374947 GpmA [COG0588]
3 Ureaplasma urealyticum B/C NC_002162.1 - 493530 493593 ureE ureF [COG2371 COG0830]
4 Lactobacillus plantarum WCFS1 B/C NC_004567.1 - 2432451 2432680 lp_2733 lp_2732 [COG0431 COG0431|COG2461]
5 Nostoc sp. PCC 7120 Cya NC_003272.1 - 5393750 5394282 all4503 [COG0745]
6 Salmonella typhimurium LT2 P-g NC_003197.1 + 1067905 1068133 ycaI [COG0658|COG2333]
7 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 Fus NC_003454.1 + 3603 3786 FN1499 [COG5295]
8 Staphylococcus epidermidis ATCC 12228 B/C NC_004461.1 + 290169 290577 SE0290 [COG0008]
9 Campylobacter jejuni P-e NC_002163.1 - 1634680 1634838 Cj1724c [COG0780]
10 Streptococcus pneumoniae B/C NC_003028.1 - 392069 392280 SP0411 [COG0172]
11 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 - 1311448 1314242 recD [COG0507]
12 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 - 3282567 3282990 rpoB rpoC [COG0085 COG0086]

0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  CTTTGTGAAAAAATTTGTTAAGCAGATATAATTGCGGCAACGTTGCGCGGATACTGAATTTACTTGATTGCACGGATAAG
5  ATTTCAACTCCCTTGATTAGATAATGATTAATCGAGTAGTCAGCAATACCAGTAACTACTCCATGCACACATGATGGTAG
6  GTTTTAACG-----------------------------------------------------------------------
7  ACTGTAAAAATGAACTGCGCCTTCAATCTTGTAT----------------------------------------------
8  AATTTTATAGATTATCTCTGTTAGAATAAGGGTTTCATGTGAAACGTATCGTACGAATTTAGGTACTATATTTAAGTGGA
9  --------------------------------------------------------------------------------
10  AAACTTTAGTATAATCATAGCAACGGATAAGTAGGTTATCTTCTTCTTTCAGAAAGTCTGCGGGTACTGCGAGCAGATAG
11  CCTTCCAACCTATTTTCCAAGGTGTTTTCTTATGCTAGTGTTATACACTTTTAAATATCTATGACCATTATCAAATAATA
12  GATTTT--------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
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4  CCTAATATCAGTGAGTTCAGTTGTTTGCATAGTAAAACTG----------------------------------------
5  CCCCTAAATATACATTTAAGGTGCAGTGCAAATACTGTAATAAAG-----------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  ATATTTCAAATTGATTTTATTTAACAAGGTTATGCATATTAAACATGTGACTTATCAAAGAGTTCTTTAAGTGCTACAAT
9  --------------------------------------------------------------------------------
10  GAGGGATAGGTGAAATTCTACCGTTAGTGACAATTACATACACAATCAAGTGCACACCTGTGAAGTTGGAT---------
11  ATCGCCACGATATAGCATAGTATAAGTAGCCTATATGAAGCATAGTAATATACTTATTTTTCAAAGTGCGTTATGACCTG
12  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
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8  ATTATTGAAATATTAGGTGGATTAGAATATTCAATATTTAATCAAGTTATTCATCAAGGTATACTTTAGGGTATCTTTAT
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  ATGAAATAATCGAGCCTTACAATTTAATTAGTCCGTAATTTGATGTAAATAATTGTATGCTACCATTGTATTACTGTATA
12  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
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8  CGTTTGAATAACTTTTTTAAAATTAAACCACTTACAATAAACTACC----------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  GAATTAACTATTATTTTATGTTATTGTTATATGCTTACTGTTGTAAGTCGTTTAAGTTGTTTCCCTCAAGCACATGTATA
12  --------------------------------------------------------------------------------

  
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11  TAATACAATATATATTTATTTAATTCAATGTGTATTTTAGGTCGAATACTTATTGTGCTAACTGTTATAAGTCATTAATT
12  --------------------------------------------------------------------------------

  
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11  TAAATTAGCTATGTATACCTGCCTTTTTCGTTTGTTTACTAAGTCGCCTATAAAAGCTATTTATAAATTATAAGTAATAC
12  --------------------------------------------------------------------------------

  
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11  TGCTATATACTCATATAAGGCTATTTAACACGTGTTTATATTTGATATAGAATTGTACTACTATAGTATTAAAAATCAAT
12  --------------------------------------------------------------------------------

  
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11  TATAGACGTTTTAAGCTGAATATATAGTCATAATCTATTTATATATCAATAGTATATTAACCTATAGTATATATTATAGT
12  --------------------------------------------------------------------------------

  
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11  GTATATCATTAGATATAAGATTATCATTAAATTTAAGAACCTATACAATATATAGTACTAATATGTATGTATTATTCAGC
12  --------------------------------------------------------------------------------

  
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11  CATAAAAAATACTATAGTTTTTTTATTCCACTATTAATAAAAACAAGTAAACATTATTTTTTTGAAAAAGTAATCAAACA
12  --------------------------------------------------------------------------------

  
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11  AAAAAATATATTAACTAATAACAAATATTAGTTCATAAAGATTCAACTATAGCTATTTTCTGACTACAACACCCTTTTTT
12  --------------------------------------------------------------------------------

  
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11  TACAAGAAATTACTTTACATTAGATTAAATATGTATTTAATTCAATGTTTTTCACTCAAACCCTCTACGCTAAGAATATC
12  --------------------------------------------------------------------------------

  
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11  AATGTGTTTTAAGAATTATTTATTGTCATGATCGTAGGAAAATAAAGCTATTTGCTGCAAGAATTACTACATAGGGGGGT
12  --------------------------------------------------------------------------------

  
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11  ACTTTACGTTTCAACGGGTTTCGGGTTTTCAAAATTTCCCCACCCCTAGTCTCTTCTCTTACTCAGTTAAAATTTAATAT
12  --------------------------------------------------------------------------------

  
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11  TATATACAGTAATTAAAACGGGAAAAAACTCTAAATCCTTTTACATACTTAATTTTTTATATACTTTTCTAACTTTTTTG
12  --------------------------------------------------------------------------------

  
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11  TTTTTTTAATACCCTTTCACCGTAAATTCTAATCCCTCATACCGTAATTTTCCACCGTAATATTTTTGCTAATTTATTTG
12  --------------------------------------------------------------------------------

  
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11  CTTAATCCAAAAAATCACGCTTTAACCCTTGATACTATTTTGTTTCACCGTAATTTAATTTTAATATATTCATTGAAAAA
12  --------------------------------------------------------------------------------

  
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11  ACATTTCCTAATAGCTTGCTATATCTAACTTCCTCCGTAATTCAAATTAATGATATTAATTTTGATATCTTAAATCTTTT
12  --------------------------------------------------------------------------------

  
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11  AAATTGTATTTATTTGACTTGTAACACTTAGTATGATAACATGATAGAAAAAATAAAGGAGATGATTATACGAATATATC
12  --------------------------------------------------------------------------------

  
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11  TAATTTATATGAAGGTCAACAACTAAAATCTTATAAAGCCCTTTGTAATACTATAGATGAAAAAATAAAGAGTGGTTGTA
12  --------------------------------------------------------------------------------

  
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11  GTAAAAAAGCTCAATTGAAGCAATTAGAATCTCTATGTTCTTATCATAAAGATGGGAACTCTTTTATTATTGATAAAATT
12  --------------------------------------------------------------------------------

  
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11  TATTGTCATAAAAAAAGTCTATCTGATAATAGACACAATGGTAATAATTCTGTTTATAATGATAAACTACAATTGTTAAT
12  --------------------------------------------------------------------------------

  
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11  AACTTGTTTACTTGCTGGAACTGATGATGGAACTTTGCTGATTCCTATTAGTAAGCTGTTACAACAACTTAAAATGATAA
12  --------------------------------------------------------------------------------

  
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11  ATAAAGATTATATATATTTTAAAAATGCAAAAAAAGAATTATCAAAAGAAATGAAAATAAATCAAGCATATATCGAAGAT
12  --------------------------------------------------------------------------------

  
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11  TTTTATAAATATAGTTATCAAATGCTAAAAAATGCTTTAAATAAATCTTTAGAATCTTTAGAAAAACGTAAACTTATCTT
12  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
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10  --------------------------------------------------------------------------------
11  CTACTCTAAAGAAATACTTATATGTTATCTTGATGAAAACAATACATGTAAATATAGGTTAGCAACTGATATTGAAATTA
12  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
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11  AAGAAATATTAAGTGCAGAAAAAAACACTTTAGAAGAAATGAATTGTAAATCTGTTTTAGATGTATTCTTAAAAAAACAA
12  --------------------------------------------------------------------------------

  
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11  ATAGGAATATTTAATTTAAAAGTAATAAATAAGCTAAAATTCGATCTTGAAAATACAGAATACTATTTTTCTATATACAA
12  --------------------------------------------------------------------------------

  
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11  AATAATTAGTAATAAACATCATATAATACAAGCCTTAGAAGAAGATAAACGAGAAGAAGTTGAGAAAAGTCTAAATTTAA
12  --------------------------------------------------------------------------------

  
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11  TAATTCAAGAAAGAATAGAAAAAAACACTAAGGTTAGACGTAACAAGATTTTAAAACAGAGAAATAATGAATGGGGAACT
12  --------------------------------------------------------------------------------

  
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11  CAAATTTTGCCCATCTACCAAGAAATAAAAGAATCTGAAGAGTATATTGAAAATACTATAAAGTTAATACAAAAGCTTAT
12  --------------------------------------------------------------------------------

  
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11  AAAGCTTAATAAATAATAAAGAATATGAATTTTATTAATTATCTTAAATAATTAACTTTTATTCTTTTTTCTTTGAACCA
12  --------------------------------------------------------------------------------

  
0  __________________________________GGATAACCGCATAACGAAAAAGCACTCCATGTCAGGGTGCTTTTTT
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  ----------------------------------AAAGCGCTTAAAATTGTTTTGCTTTCTTTAGTGAAATCCACTACAA
5  ----------------------------------CAACAAATATTACTTGACATAAATGTTATTTTATGCGGTGAGTTTT
6  ----------------------------------CAAAACTTGAACCCGAAAAAAGCACC----GTCAGGGTGCTTTTTT
7  ----------------------------------CAAAGATTTTGGGTGTAGTTTATTTTAATAAGTTATTATACACTAA
8  ----------------------------------GCATTTATTTGCATATTTTGATAGTGGTCATAGTTATCATTTTATT
9  ---------------------------------------------------TTTTTTCCTTTTGAAAGATTTGCCTTATT
10  ----------------------------------GGAACCGTGGCCCTGCCACTCCAACGTTTTGTCAGGGTGCTTTTTT
11  TCTCTTTGTATTTCCAGCAAAGCTGATAAATCCAAAGACCTTCGCCAAAGAAAAAGAAC--CAAAAAAGAAAGCTCCTTA
12  ----------------------------------ACAGCAAGATATTTGTTAAAAGCACTCCTT-TCGGGGTGCTTTTTT

  
0  CCTAT_TGTTTTGCATT_TATTTTATATAATATTTGG_CTATTTGAACTTCTGCTCTTTACATCTTTCGTTTT___TTTC
1  ------------------------------------------------TAAGTTTTTTTAAAAATTTATATTT---TTT-
2  ----T-TACCTCTCCCC-CATTTTGTATAATATTTGC-CAATTTGATTGTAAAATATTTTTAAAGATAAGTCA---AACC
3  -----------------------------------------------------------------TTGTCAAA---CTAA
4  TATAG-TTATTGACTAA-GAAATTATATAATATTTGA-CTATTTGATCATAGAAGGAGTTGTTCTCA-------------
5  ATTAT-TGTTTTGCATT-TATT----AGTATTTTTGTACTAATAGAAATATATCCAAACCAATCGATACCTGT---CAAG
6  CATTT-ATACGCCGTCA-GGCGCAAACGCTATTCGAC-CGAAAACTGGAAAACGTTTCGCATTTTTTGCTGCG---TCTT
7  ATAAA-TCATAATTAGT-TATTTTATATAATATTTG---TATTTGTTGTGTGTCTATTTTTTGGTACAATGTT---TAAG
8  GATGTATAATTTGCAAAGTATTTTAATTAATATTTGG-CTATTTATTATCCACACAATTAATAGTAGGAGTGA---AAAT
9  CTAGT-ATAAAAAGCTT-TATTTAATATAATATTTGT-CTTTTTTATGCAATTTGCTAAAAATGTTTATTTTTCAATTGC
10  CATAA-AGGAGTTCTT----------------------------------------------------------------
11  --TAT-TGTTTT-CTTT-TATATTAAATAAAAGTTGG-CTATTTAAAGATACCTATAATAAATAAATATATAT---TATA
12  AGGAC-TTAATATACAT-GACGTAGAATCTTAATATA-AAATCTATTTTTATATTATTATGATAAAAATAGTT---GAAA

  
0  T_TGATAGTAAACTACAATACAGTTT_____ACATTTTAAAAAAGGTGATTCC___________________________
1  T-TAAT--TCAAATAAAATTTATTAT-----AAGTTTTTAAAAAAACCAAAAAATACACATTTATATTATATAATATTAT
2  T-TTTCAGGGAAATGGTGTAAGAGCT-----TTTTGTTGTGTTTATTTATTCAATGAGGTATAATAAAAATAGCCTTTTG
3  A-ATATTATATTAATTTATTTTCGTT-----ACATTTTAAAAAAGCGAGGTAATAATC----------------------
4  --------------------------------------------------------------------------------
5  C-AATTTGTGATTTTATTTGACAATA-----TTGGATTTAGGCTCAATCCAAAATCCTGTAGAATTTTGGAATTTTGTAT
6  A-CATTTATCAGGTAAAAAACCTGGA-----ATCCGCGCCGTATAGCACAAAATCCCCTCCAGACAATGGCGTCCTGAAC
7  A-TTATATAAATATTTTATTAGGAGA-----GAATTTT------------------------------------------
8  A-------------------------------------------------------------------------------
9  TCTAAAAGTAATTTTTTATATAATTTTCTAAAAATTTTCAATAAGGAAAGCTC---------------------------
10  --------------------------------------------------------------------------------
11  T-AAATATAGATATTTTTAAATAGCC-----AACTTTTATTTTTTAGAATACTATTAGCTGATTTTAAATAGCCAAGAAA
12  T-ATAAAGTTTTTATATAAATTATAG-----TTTCTGCGATATCTAAAAAAACTATATAGAGATGTTTTACTGTAAATAA

  
0  ________________________________________________________________________________
1  AACTTAAATACGTAATCATTTTTATTAAA---------------------------------------------------
2  GAATAAAATTTAAAGACGAGAAGGTGGTGTAGC-----------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  CTATCGGAGCTATCTGTGGTGTATTTTAAATTTTGTGTAGAGCTATTGCACCCCAGAAATTGCTCTGGGCGTGTAGCTAG
6  CTGCACACTTTCCCGCACAGGGAGGTGTCT--------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  GGATATGATATT--------------------------------------------------------------------
12  ATTAAAACATATAAAAATGGCTTGAAAAGGGTGTTGACAATTCAAATTATTTATGGTAAAATAACGAAATGCAATGGAAT

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
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4  --------------------------------------------------------------------------------
5  AGCGATTTATGGTATATTTGGCAATGTTACATATATTACTTGCAGAATCATTCACGATCGCCAAAGTGTGAATGTAGTGA
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  GTTTAATTATATAATAATATTAATTGTATTTTTATTAATTAAATGGTTATAATAAAGAAATAGTTGTTTAATGTACGCAA

  
0  _________________________________________________________________
1  -----------------------------------------------------------------
2  -----------------------------------------------------------------
3  -----------------------------------------------------------------
4  -----------------------------------------------------------------
5  AAAACAGATAATCAACTCTAACCACCATATTGATACAACCACAGGGCCTGAACTTTT--------
6  -----------------------------------------------------------------
7  -----------------------------------------------------------------
8  -----------------------------------------------------------------
9  -----------------------------------------------------------------
10  -----------------------------------------------------------------
11  -----------------------------------------------------------------
12  TCCAAAAGTGTACTTTATTGTAGTGCATTTTTGGTTATTTTAGTTTATACAAGGGGTGAAGGCTA