BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (+ 2817627 to 2817758) circular

Islands  GA...GCACACC.....GA..G.A...ACGC..AG.A.,,,C,,,.CA....A.....A...,,,,,.CAG,,,GGAC..
5'-   GATTTGCACACCTTTTTGATTGTATTTACGCTTAGTATAAACAAATCATTTTATTTTTATTTAAAAATCAGAAAGGACTT
     |         |         |         |         |         |         |         |      
     2817630   2817640   2817650   2817660   2817670   2817680   2817690   2817700
     |         |         |         |         |         |         |         |      
3'-   CTAAACGTGTGGAAAAACTAACATAAATGCGAATCATATTTGTTTAGTAAAATAAAAATAAATTTTTAGTCTTTCCTGAA
Islands  C.,,,CG.G.GG,,,,,C.AACA.,,,.GCGAA.CA.A...G...AG.,,,,.,,,,,.,,,.....AG.C...CC.G,,

  
Islands  .ACGA.A..,,,CAAGAA.GC......AA.GA.CA.CAG,,,GGAGGACACA
5'-   TACGATATTAAACAAGAATGCTTTTTTAATGATCATCAGAAAGGAGGACACA
     |         |         |         |         |        
     2817710   2817720   2817730   2817740   2817750   
     |         |         |         |         |        
3'-   ATGCTATAATTTGTTCTTACGAAAAAATTACTAGTAGTCTTTCCTCCTGTGT
Islands  ,.GC.A.AA...G..C..ACG,,,,,,..AC.AG.AG.C...CC.CC.G.G.

IGR  +  2817627  2817758  ()  13  yrvJ

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 + 2817627 2817758 yrvJ [COG3103|COG0860]
1 Staphylococcus epidermidis ATCC 12228 B/C NC_004461.1 - 1779483 1779818 SE1725 [COG0504]
2 Leptospira interrogans serovar lai str. 56601 chromosome I Sp NC_004342.1 - 3484075 3484990 LA3523 [COG4608]
3 Leptospira interrogans serovar lai str. 56601 chromosome I Sp NC_004342.1 + 3287118 3287316 LA3324 [COG4886]
4 Methanosarcina acetivorans str. C2A A NC_003552.1 + 3888220 3888941 MA3130 [COG4738]
5 Rickettsia conorii Malish 7 P-a NC_003103.1 + 207833 208062 RC0201 [-]
6 Listeria monocytogenes strain EGD B/C NC_003210.1 + 1194825 1194889 AckA2 cobD lmo1170 [COG0282 COG0079 COG4542]
7 Listeria innocua Clip11262 B/C NC_003212.1 + 1147444 1147510 AckA2 cobD lin1134 [COG0282 COG0079 COG4542]
8 Buchnera aphidicola str. Sg (Schizaphis graminum) P-g NC_004061.1 - 420412 420584 nusA infB [COG0195 COG0532]
9 Staphylococcus aureus subsp. aureus N315 B/C NC_002745.1 - 2173678 2173914 SA1924 [COG1012]
10 Borrelia burgdorferi plasmid lp38 Sp NC_001856.1 + 29402 29826 BBJ40 [-]
11 Helicobacter pylori 26695 P-e NC_000915.1 - 772907 773113 HP0718 [COG1279]
12 Chlamydia trachomatis P/C/V NC_000117.1 - 572237 572374 sohB polA yacE rho [COG0616 COG0258|COG0749 COG0237 COG1158]

0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  ACTTTTATATGATTTTTGCCGAATGGGTGTGTCAAGCGTATCCGATATAAATTTATTTCAAAAGTTTACTACTGATCTCT
3  GATTTCTTTTTTTCTTTTGAACCTTAAGCTAACT----------------------------------------------
4  AGGATCGGAAAAAGTTGAGCTTAAACATTTTTCCCCTTACAGGCTCACATCCAGGGTTCAGTCTCAAATTAAAAACCTGA
5  AATTAAATTATACAGTTTAAATTAAATAAAGTTAATAAGTGACATATATGTTTAAAATAAAAAATCATCGTACAACTTTT
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  TTATTTTTAGTAAAAAAAATAAA---------------------------------------------------------
9  TTACATGACGTTTAAACATAGCATTG------------------------------------------------------
10  AGAAATAGTTACTCCTGAAATTATTTAAAAATCAGAAATACCAACTCCACAAATAACAGATTTTAATATCAAAGTACAGC
11  GTTAATCTTAACTTATTCTTAAACGCCACTAAGAGCGCT-----------------------------------------
12  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  ATAAAATTGAATACCGTTAATTTTATCACAAAACACTGATTCCATGTAAAATATAGGTACTTTATTATATAGTTATGAGT
3  --------------------------------------------------------------------------------
4  GAATGTGATCAGGGAATAACTCTCCACAACCTGAACAGTATAATCAAAGGTTTACCATCCTCTCTTTTTGCTTTTTTGTT
5  AATTTTTAATTA--------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  CATTCGAGTAATATTTAACATAGTTGCCGATATAATCCTAAAAATTATAAAATATTTATGCGAAAAGCTTCTCTAAACTT
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  AATAGATATTTTGCTACTGCTCCAGACGAAACTGAATGTTTGTATCGAAATGAAATTTGAATCATAATTTAACTTGAGTA
3  --------------------------------------------------------------------------------
4  CAGATCCTGCGTGGAGATTCCTAAAATCATTTCATCAATGACCCAACATCTCTGGCACCCAATTTTTTATAAATAGGGAA
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  TAATTTTGGATATTTTCTGGATTAGTATTGATATCGGGTTTTGGATCGACCTTTCCAATAGGTAAAAATGATATGAAAAT
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  ACTCGAAATGGATCTGCGGGGAAATCAGCAGAACATTCTTTCAAACTAAAGCCGTCTCGCTTTTTGAACTCAACACATCG
3  --------------------------------------------------------------------------------
4  CCGTTCTTTCTACAAATAATTGCATTCTGCAGCC----------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  TGAATTCAGTATTGCTGTAATAAAGTTAAGCTTAATAATATTTAATTTAGGTTTTTCAA---------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  CTCTAGAAACTCAGCAAACGCTTTCTAAACTGAAACTAAAGACGATTATTATATCATATTTTCTGCATGCAATTTATTGA
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  TCAGAGGTTTGCTGGTGACAGTCGAATTCGCCCTGATTTTCTTAGGTCGAATTCACGTTAATTTAAATCAATGATTTTGT
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  TTGGTGTGATTACAATTAAAAACAAAGATTTTGGAAATTAAGAACTTGTCCCAAAACTTTAAAGAATTTACATGATAGTT
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  CTTTAGAAATTTTTAATAAAACACAATGGTTCCTACAAAAACCGTCACATTTGGTAATTTGCGAACTTTCAAGCAATTCT
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  AATATTGTTAAATTTTTGTGTGAGTTCCCACAGATTAAGTCACATGATTAATTTTTCGTGATAGAAATTCGTAAGAGTTC
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  ___GATTTGCACACCTTTTTGATTGTATTTACGC____TTAG_TATAAA__CAA__A__________TCATTTTATTT__
1  ------------------------------------------------T--CAA--G----------TAACTATATTT--
2  CCACATTTTCAAAATTTAACTGCAAACATAGATG----TTGT-GGTAAT--TCC--T----------ACATTTTATTT--
3  ---TGAATGAAAAATTATTAGATT---TTGAAAC----CAAA-GATAAA--GAT--T----------TC-TGGGATCT--
4  ---CACATTTTATAATTTTTCAAT-TATGTATCC----AAAGATAAAAA--CTC--AGGATTC----TTATTTTATTT--
5  ---AACTATTGATTAGGATATAAGTAGACAAGAC----ATAA-TATATG--GTA--A----------TCATTTTATTT--
6  ----------------------------TAAAGC----ATGG-AGTAAA--CAAGAA----------TGGCTTTGTTTAC
7  ------------------------AAAATAGGAT----GGAG-TAAACA--AGA--A----------GTAAGTTGTTTAC
8  ---AATATATATTTTTTTTCATGAAAAAAGTGTT----GTAG-TATAAG--CAA--T------------ATTTTATTT--
9  ---ATTATAACTATTTCTAAGTCTTCGCATTATT----TGCG-ATGATG--TGG--G----------AATAGTTATTT--
10  ---AATGTGCTCTCCTTATATATTTGAATTACTAAACATTAG-TTTTAATTCAA--AATAACAATATTAAATTTATTT--
11  ---AAAAAATGGGGTTTTTAAATTTTCGCGCAAA----GCCA-TTGTGT--ATC--A----------TCATTTAATTT--
12  ---------TCTTGAGAAGAAAAGGACCTGGAGT----ATAG-TATTC---CAG--G----------TCTTTTAATTT--

  
0  TTATTTAA_AAA__TCAGAAAGGACT_____TTACGA__TA_____TTAAACA__A_GAATGC__TTTTTTAATGATCAT
1  TAATTTAA-AAA--TATGTCTCG-CT-----TTATAA--CA-----G-AAACATTA-AAGTGG--GACTTTTATTTTTAT
2  TTACATAA-AAA--TCAGGTTTTATA-----AAATAA--AT-----TTCAGCC--A-TCGAAC--TCACGTCGGAGTTAA
3  TACTTTTA-AAA--ACACTTAGTAAT-----TTAAAA--AAGAACGTTTAAAT--T-GAATGA--CGTTTTATTTTTATT
4  TTATTTAA-ATG---CAGTAAATACTACTTTTTAAGA--CA-----ACAAAAA--AAGAATATAGATTTTAAATAGTTAT
5  ATATTTAGCAAA--TAATAAATATGT-----GATTGATTTA-----TTAAAAA--T-ATTTAC--TATAATATTAATTAA
6  TCCTTTAA-AAA--TGAGAAAGGACT-----GAGCTA--T----------------------------------------
7  TCCTTTAA-AAA--TGAGAAAGGACT-----GAGCTA--T----------------------------------------
8  TTATTAAA-AAT--AGGGTGATCTTA-----CCTAAA--AC-----CCCGAAA--T-TTCGGG--GTTTTTTATTATAAT
9  TTATTTAA-AAA--T-ATAAAAAAAT-----AGATGC--AG-----CAAAATT--T-TAAAGCA-TTTTATTTTGAACAT
10  TTATTTGA-TAT--TGAAAATTTAAT-----TTC-----TA-----TT---------GCATG----TTTTTAGTGATAAT
11  TTATTTAT-AAAGGTCGTTTTAAACC-----CTAAAA--TT-----TTAAAAT--A-CCAT-----TTTTGAATGATTGG
12  TTATTTAA-AAA--TTCTTTTTATAA-----TCCCCC--TG-----TTTTAGT--A-CCGTTT--TGTTGCTAATGCTAA

  
0  __CAGAAAGGAGGACACA______________________________________________________________
1  --TTAAAAGGTGGTAGTATTTTATTTGGGCTCCTTTAATTAGGACACGTGTATTAAATAGATACGCTCCCCTTACAATTG
2  --TATCTTTTACAACGTGAGAGTTCCCACATTTTTAAGAATTCTTGTTTTAAAAAAAGGATAATTCTACTTTGTAAGAA-
3  --TAGAAATTTGTCTTCCTATTTAATTCAATCCCAATCCGGATAACCTCT------------------------------
4  --TAAGGTTTTTTAATACTCTTTTAAGTCCAAAAAGACTTTTTGTTGAAGTAAAATAACACGACTTCTGGAAAATATCCC
5  --CTATAATTGATTTATCAAT-----------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --CTTTATTTGAAAATTTTTAGTTTGAGGTTGTCTAAG------------------------------------------
9  ATTAAAATGGAGCGTATCATAATGGAATGTAATGTTTATATCGTATGCATTACGGATAAATAATATATAAATCATTCTTG
10  --CTAGA-------------------------------------------------------------------------
11  --TTTGTATGGTGTTGGTAGTTTTTAGCTTATTTTGAGTGAAAGGATTAAGCAAG-------------------------
12  --AAGCGATTAATAGATTTATTAGGGTTTGC-------------------------------------------------

  
0  ________________________________________________________________________________
1  CTGTGAGAGGGAGCGATTTTTTTATTTTTAATATTCATAATGAAATGTAAAAGTGAATCAAATTGTTGAGTAATATACCA
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  AGCATAAGATGAAATTAATTTATGAAGAAAGCAGTCAGGGCACTTTTGAGATTTTATATATAAGAAGAGCCGGAAAAGTA
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  AGGAGTGAAAGAATA-----------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  AATTTATTTCATTATTATTGTTAAATACATAGGTTACTCACAGTTTTTAATAGATTTTATCAATCATTAAATAGTTTACT
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  AACCAAGCTCAGAAAAGAGAAATGAAAGCATTAGCCTCGTTAAGAAGAACGTTAACCATGCCCACAGTTGAAATTTTAAT
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  AAATTTTACAGGAGGTCAGACA----------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  TATATATAAACATATATTAAAACTAAAAGATAAGTAAATATTTATATTAATTCACTCTATAATGGTTCTTCGGGTGATTA
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  _
1  -
2  -
3  -
4  A
5  -
6  -
7  -
8  -
9  -
10  -
11  -
12  -

Complementary Intergenic Regions

IGR  -   2817627  2817758  ()  11  yrzK