BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (- 2800081 to 2800410) circular

Islands  CA.CGGCG.GCCGC..G.C.A.AA...C.CG.AGAA.ACA.ACGAA.C.CGAG.GACGGA.C.GAG.ACGCCGAAGCCC.
5'-   CATCGGCGTGCCGCTTGTCTATAATTTCTCGTAGAATACATACGAATCTCGAGTGACGGATCTGAGTACGCCGAAGCCCT
  |         |         |         |         |         |         |         |         
  2800410   2800400   2800390   2800380   2800370   2800360   2800350   2800340   
  |         |         |         |         |         |         |         |         
3'-   GTAGCCGCACGGCGAACAGATATTAAAGAGCATCTTATGTATGCTTAGAGCTCACTGCCTAGACTCATGCGGCTTCGGGA
Islands  G.AGCCGCACGGCGAACAGA.A..,,,GAGCA.C..A.G.A.GC..AGAGC.CAC.GCC.AGAC.CA.GCGGC..CGGGA

  
Islands  G..,,,GAGAGAAGC.CCA.AAGC.G,,,GGAGC...A.CAGAAGA.CGGAGGAAGC.AA.CC.GAG.GCAG..AA.CAC
5'-   GTTAAAGAGAGAAGCTCCATAAGCTGAAAGGAGCTTTATCAGAAGATCGGAGGAAGCTAATCCTGAGTGCAGTTAATCAC
  |         |         |         |         |         |         |         |         
  2800330   2800320   2800310   2800300   2800290   2800280   2800270   2800260   
  |         |         |         |         |         |         |         |         
3'-   CAATTTCTCTCTTCGAGGTATTCGACTTTCCTCGAAATAGTCTTCTAGCCTCCTTCGATTAGGACTCACGTCAATTAGTG
Islands  CAA...C.C.C..CGAGG.A..CGAC...CC.CG,,,.AG.C..C.AGCC.CC..CGA..AGGAC.CACG.CAA..AG.G

  
Term (99.89)%  ----------------------------------------------------------------------------GCTC
Islands  .GCCGC..A.CC.GCG..ACAGGG..,,,GG.GACGGGCGCA.GAA.GCCCG.AA.CAGGG.GG.ACCGCGAGACAGC.C
5'-   TGCCGCTTATCCTGCGTTACAGGGTTAAAGGTGACGGGCGCATGAATGCCCGTAATCAGGGTGGTACCGCGAGACAGCTC
  |         |         |         |         |         |         |         |         
  2800250   2800240   2800230   2800220   2800210   2800200   2800190   2800180   
  |         |         |         |         |         |         |         |         
3'-   ACGGCGAATAGGACGCAATGTCCCAATTTCCACTGCCCGCGTACTTACGGGCATTAGTCCCACCATGGCGCTCTGTCGAG
Islands  ACGGCGAA.AGGACGCAA.G.CCCAA...CCAC.GCCCGCG.AC..ACGGGCA..AG.CCCACCA.GGCGC.C.G.CGAG

  
Term (99.89)%  TCGTCCCTGTGTAAACGTTGGTTTGCATAGGGGGAGGGC-----------------------------------------
Islands  .CG.CCC.G.G.,,,CG..GG...GCA.AGGGGGAGGGC......GC.G.CAC.GAAGAGAA...CGA.....A.AGAGG
5'-   TCGTCCCTGTGTAAACGTTGGTTTGCATAGGGGGAGGGCTTTTTTGCTGTCACTGAAGAGAATTTCGATTTTTATAGAGG
  |         |         |         |         |         |         |         |         
  2800170   2800160   2800150   2800140   2800130   2800120   2800110   2800100   
  |         |         |         |         |         |         |         |         
3'-   AGCAGGGACACATTTGCAACCAAACGTATCCCCCTCCCGAAAAAACGACAGTGACTTCTCTTAAAGCTAAAAATATCTCC
Islands  AGCAGGGACACA...GCAACC,,,CG.A.CCCCC.CCCG,,,,,,CGACAG.GAC..C.C..,,,GC.,,,,,.A.C.CC

  
Islands  AGG,,,.ACA
5'-   AGGAAATACA
  |         
  2800090   
  |         
3'-   TCCTTTATGT
Islands  .CC...A.G.

IGR  -   2800081  2800410  ()  13  alaS

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 - 2800081 2800410 alaS [COG0013]
1 Listeria monocytogenes strain EGD B/C NC_003210.1 - 1494037 1494316 glyQ glyS [COG0752 COG0751]
2 Thermoanaerobacter tengcongensis strain MB4T B/C NC_003869.1 - 1553634 1553963 IleS [COG0060]
3 Clostridium tetani E88 B/C NC_004557.1 + 827087 827493 CTC00781 [COG2502]
4 Bacillus subtilis B/C NC_000964.1 - 2607926 2608221 glyQ glyS [COG0752 COG0751]
5 Bacillus subtilis B/C NC_000964.1 + 20557 20877 serS [COG0172]
6 Listeria monocytogenes strain EGD B/C NC_003210.1 + 1240682 1241047 pheS pheT [COG0016 COG0073|COG0072]
7 Staphylococcus aureus subsp. aureus N315 B/C NC_002745.1 + 1171067 1171286 ileS [COG0060]
8 Listeria innocua Clip11262 B/C NC_003212.1 + 1191579 1191943 pheS pheT [COG0016 COG0073|COG0072]
9 Listeria innocua Clip11262 B/C NC_003212.1 - 1500059 1500338 glyQ glyS [COG0752 COG0751]
10 Bacillus subtilis B/C NC_000964.1 + 1612417 1612757 ileS [COG0060]
11 Clostridium tetani E88 B/C NC_004557.1 + 1123497 1123798 CTC01055 [COG0013]
12 Bacillus halodurans B/C NC_002570.1 + 1362782 1363111 alaS [COG0013]

0  ________________________________________________________________________CATCGGCG
1  --------------------------------------------------------------------------------
2  ATTTTAATTGTATTGACTTAATGGAGGATGTGT---------------------------------------TATATAAT
3  ATCTATTGACATTGGGAAATATAAAATATATAATATTAATCAATAGTTTTAAATGGAAA-------------TTTTAAAA
4  --------------------------------------------------------------------------------
5  AACAGTTGAAAGCTGT--------------------------------------------------------GGAAACTT
6  AAAAGAAATAATCTCTCCAACCAATATGGAGAGATTATTTTTTAGCTTGAATCTTTCCTAGAACCATACTATAATAGAAA
7  --------------------------------------------------------------------------------
8  AAAGAGATAATCTCTCCAACTAATATGGGGAGATTATTTTTTAGCTTGAATCTTTCGTAGAACCATACTAT-AATAGAAA
9  --------------------------------------------------------------------------------
10  ATTCTCTGATTATCTTGACATTTTCTTAGCTT----------------------------------------GTCGAATA
11  ----------------------------------------------------------------------------TTTT
12  CGTTTTTTATAATATAG-------------------------------------------------------GTGCAAAA

  
0  TGCCGCTTGTCTATAATTTCTCGTAGAATACATACGAATCTCGAGTGACGGATCTGAGTACGCCGAAGCCCTGTTAAAGA
1  ------------------------------CTTTTTAGCAAAAATACAGTATCTTTTAATATATCAACTAATAGGTGCGT
2  TTGAGTAAAAATAATATCGGGAAAAGCTATGAAGAGGACGAGTAGGTAGAAGCGGCTTTCAGAGAGTTGGCGGTTGGTGC
3  AAGACAGTGATGGGAAGAGTAAGTGTAAAAGGTAATTATAGCGAGTCGATGATGGTGAAAGATTGATATGAATTTTATAC
4  -----------------------------CATTTGGTCCATCTTTTTATATGATCATTTATTATTAAATATGTTGCAGTG
5  ATAGTACATTATAAGCACAAATAAAGATCGAAAAGCGTTGATAGGAACTAGTAGGGAGCCTCTCTTTCTAAGAGAGCCGA
6  CTATCTAAATAACTAAAGACAATGAAAGAGCCAAGTAGCATAGTGAGTCTGTATAGGGAGAAGTGGTCATAGACTGAAAG
7  -------------------------------------------------------------GAATTAAATAAAGACAGAC
8  CTATCTAAATAAGTAAAGACAATGAAAGAGCCAAGTAGCATAGTGAGTCTGTATAGGGAGAAGTGGTCATAGACTGAAAG
9  ----------------------------CTTTTTCGCAAAAATACAGTATCTTTTAATATATCAACTAATAGGTACATTG
10  TAATACGTTCATAAATTCAGATGAAAAAACGGTTGAAAGGGACAGTCATGTTTCCTTCAGGCCTTCATAGCGACCCGGAG
11  TTCACTTAAATTTAATGAAATTATTGACATATTATGATTTTTTATTTATAATCGTTATCAAAATGAATAATTATGACAAT
12  TGGAAAACAGGTAATACGTTGATGGAACGAGTACGTTGCAGACCATCCAAAAACGCCTACATAGCTAGTGCGTAATCAGA

  
0  GAGAAGCTCCATAAGCTGAAAGGAGCTTTATCAGAAGATCG_GAGGAAG_CTAATCCTGAGTGCAGTTAATCACTGCCGC
1  TGAAGGAAAATAGTAACAAAAAGCTCTATTTTTAGCGAGTT-CGGGTTT-GGTGGGAGCCGAATATTTAACTTTTTGTGA
2  GAGCCAATAAGTTCGTTTCTACTGAAAATCCCCTCGGAGCT-GCAGGCT-GAACTTGTAAGTAGGCTGGGCCGGATTTTC
3  TGAAGAACATCCCTGAGTCTCTAACCGAAATCAATATATTGAGAGTAGG-CTTAGAC-GAAACCAGATCGTTAAAGCTGG
4  AGAGAAAGAAGTACTTGCGTTTACCTCATGAAAGCGACCTT-AGGGCGG-TGTAAGCTAAGGATGAGCACGCAACGAAAG
5  TGGTTGGTGCGAATCGGTGAAAGATGCTGTCTGAATCCATC-CTTGAGC-GAAATGCTGAAGCGAGTAGGCATTTACGGG
6  CCACTTTACAAACGAATTTGTGAACATTTCACCTCTGGAGT-CGCCGCC-GGGAAGCACAAGTAGTGTGAAGGTGGTCCG
7  GCGTAATATACATTTAACTTTTCACAGCGAATTAGGTAATG-GTGAGAG-CCTAGTAAAAGCATGTATGTTATATCACTG
8  CCACTTTACAAACGAATTTGCGAACATTTCACCTCTGGAGT-CGCCCCC-CGAGAAGCACGTTATGTGTGAAGGTGGTCC
9  AAGGAAAATAGTAACAAAAAGCTCTGTTTTTAGCGAGTTCG-GGTTTGG-TGTGAGCCGGATATTTAACTTTTTGTGAAG
10  ATGGTGAGAGTCCGGGATGGCCGGAATCATGTAGATCAGCC-CTTTAGT-TTCCTTGCTGAACTCACAGTAGGTTAGGAC
11  GATAAAAAGGAGTAAATATTTAATTATTATAAAGAGAGGAA-GTGGAAG-GTGAAAACTTCTTAATAATTGTATTGAAGC
12  GAGGTTGTTCCTTGGCTGAAAGAACAACTGGATGAAGGGTA-ACGGAAGGCTACTCCGAAGTGCAGGAAAACCCTGCCGT

  
0  TTATCCTGCGTTACAGGG__TTAAAGGTGACGG_GCGCATGAATGCCCGTAATCA__GGGTGGTACCGCGAGAC____A_
1  AGGCGTTCTGGAGTACAG--CGAAATCAAGGTG-GGAATTGTTTAATTCCAAATA--GGGTGGAACCGCGAGCT----A-
2  CGTTATCTAAAATGAGGG--ATTAAGGCAAAGC-TTTGCTTTGTCTTAATAATTA--GGGTGGTACCGCGA-------A-
3  GAGTATTGTTAGATACTT--TTAAAGAGGAGAG-CCTTTTATAGGC---TAACCA--GGGTGGTACCGCGAGAGTTTAA-
4  GCATTCTTGAGCAATTTT--AAAAAAGAGGCTG-GGATTTTGTTCTCAGCAACTA--GGGTGGAACCGCGGGAG----A-
5  ATAACCGTTATGTTTGAA--AGTGGAAAACGAG-TCTTTGATTTGTTTTCAATCA--GGGTGGCAACGCGAGA-------
6  GTTACTAAGCCGTTATCG--AATTATGAGTGGG-AACAATTTTTTGTTCTTATTA--GGGTGGTACCGCGAGA-----A-
7  GCTTTTTAATATTTAAAT--AATGTAATGAGAG-AACTCTAAGTTGAGTTAATAA--GGGTGGTACCGCGAGCA----A-
8  GGTTACTAAGCCGTTATC--GAATTTTGAGTGG-GAACAAATTTTGTTCTTATTA--GGGTGGTACCGCGAGA-----A-
9  GCGTTCTGGAGTACAGCGAAATCAAGGTGGGAA-TTGTTTAAATTCC---AAATA--GGGTGGAACCGCGAGAT----A-
10  GTTCATCACGTTACGATG--CTCAAGAGGAAAAAGTGTATGCTTGCTTTTTCTAAAAGGGTGGTACCGCGAGAT----AA
11  TATTTTTGAGTCTTTAGA--ACTTTAAGAGATA-CAATTTTATATTGTATAAATA--GGGTGGTACCGCG-GA-----A-
12  TTG--CTGCGTTA-AGGC--TTAAAG-TGATGG-ACCTATGT----CCATAATTA--GGGTGGTACCGCGTGACTTC-A-

  
0  GC__TCT_CGTCCCTGTGTAAACGT_TGG_TTT_GCATAGGGGGA_GGGCTTTTTTGCTGTCACTGAAGAGAATTTCGAT
1  AC--TCT-CGTCCCTATATG--CTT-TAAATCA-GCATATAGAGACGAGAGTTTTTATATTGGCTGAATTATTTTTGGAG
2  CT--TCT-CGTCCCTGACGAGAAGT-TTT-CTT-TTTAGTAGGAA-AAATCTTAAAGAGGAGGTAGCGAGA---------
3  GC--TTTTCGTCCCTTAGTTGGGAT-GAA-AGG-CTTTTTTGATT-AAAAAAATTTATTTACTAAAATCCATGAGGGTAA
4  AC--TCT-CGTCCCTATGTTTGCGGCTGG-CAA-GCATAGAGACG-GGAGTTTTTTGGTTGCTGCCGCAGTCAACTTATG
5  GC--TCT-CGTCCCTTTATGGGGAT-GAG-GGC-TCTTTTTATTT-TCGATAAATCAATAAAAAAAGGAGTGTTTCGC--
6  G---TCT-CGTCCCTTTGTGGATAG-AGC-TTT-TTTATTTTGTC-TAAAAAGAAGGAGTGAACGGT-------------
7  ------T-CGTCCCTTTTAATTTAA-CTT-AGA-GTTTTTTAAAT-TTTTAAGGAGTGAAAAAA----------------
8  G---TCT-CGTCCCTTTGTGGATAG-AGC-TTT-TTTATTTTGTC-TAAAAAGAAGGAGTGAACGGT-------------
9  AC--TCT-CGTCCCTATATG--CTT-TAA-ATCAGCATATAGGGACGAGAGTTTTTATATTGGCTGAATTATTTTGGAGG
10  GCTTTCT-CGTCCCTTATGGGATGA-GAG-GGC-TTTTTTTATTT-TCTGAAAAAATGCAGTGGAGGAATGAAA------
11  GC--TTT-CGTCCCTTATAGATAAA-ACG-AAG-GCTTTTTTGTC-GTTTGATTGTAAAAAGATTAGGAGGAAATAAAT-
12  GC--TCT-CGTCCCTTCATAAGGGA-GAG-GGC-TTTTTCTTATG-GAACCAAAGCCCACATATAGGAGATAAAGGAGTG

  
0  TTTTATAGAGGAGGAAATACA________________
1  GTGGAAGCA----------------------------
2  -------------------------------------
3  GTAGTTTATTATAGGAAATAATTTAGGAGGTAATTTT
4  AAAGAAAAGTGGAGGTGCTTGAA--------------
5  -------------------------------------
6  -------------------------------------
7  -------------------------------------
8  -------------------------------------
9  TGGAAGCA-----------------------------
10  -------------------------------------
11  -------------------------------------
12  TACCTGAA-----------------------------