BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (- 2755072 to 2755578) circular

Islands  ACGAACC.A.CC...C..CA.CA.AAG.G..G.,,,.,,,,,CA.GCAC..A...A.G....A.GG.G.C..CAACA.AA
5'-   ACGAACCTATCCTTTCTTCATCATAAGTGTTGTAAATAAAAACATGCACTTATTTATGTTTTATGGTGTCTTCAACATAA
          |         |         |         |         |         |         |         | 
          2755570   2755560   2755550   2755540   2755530   2755520   2755510   27
          |         |         |         |         |         |         |         | 
3'-   TGCTTGGATAGGAAAGAAGTAGTATTCACAACATTTATTTTTGTACGTGAATAAATACAAAATACCACAGAAGTTGTATT
Islands  .GC..GGA.AGG,,,GAAG.AG.A..CACAACA...A.....G.ACG.GAA.,,,.AC,,,,.ACCACAGAAG..G.A..

  
Term (54.62)%  -------------------------------GGTTTTTTAAAAAAACC--------------------------------
Islands  CGA.,,,CC..,,,G.C.GC...AAGGCAAGGG......,,,,,,,CCA...,,,,.GAACC.GA...A.AAGC.GAG,,
5'-   CGATAAACCTTAAAGTCTGCTTTAAGGCAAGGGTTTTTTAAAAAAACCATTTAAAATGAACCTGATTTATAAGCTGAGAA
          |         |         |         |         |         |         |         | 
  55500   2755490   2755480   2755470   2755460   2755450   2755440   2755430   27
          |         |         |         |         |         |         |         | 
3'-   GCTATTTGGAATTTCAGACGAAATTCCGTTCCCAAAAAATTTTTTTGGTAAATTTTACTTGGACTAAATATTCGACTCTT
Islands  GC.A...GGAA...CAGACG,,,..CCG..CCC,,,,,,.......GG.,,,....AC..GGAC.,,,.A..CGAC.C..
Term (89.56)%  -------GGAATTTCAGACGAAATTCC-----------------------------------------------------

  
Islands  ,CAG.CAG.AA..AA.GCAG,,,C.G.AA.CA.GC.GCGA.CCCGGGA.G,,,G..C..C..C.C..GCCC,,,.G.CAC
5'-   ACAGTCAGTAATTAATGCAGAAACTGTAATCATGCTGCGATCCCGGGATGAAAGTTCTTCTTCTCTTGCCCAAATGTCAC
          |         |         |         |         |         |         |         | 
  55420   2755410   2755400   2755390   2755380   2755370   2755360   2755350   27
          |         |         |         |         |         |         |         | 
3'-   TGTCAGTCATTAATTACGTCTTTGACATTAGTACGACGCTAGGGCCCTACTTTCAAGAAGAAGAGAACGGGTTTACAGTG
Islands  .G.CAG.CA..AA..ACG.C...GACA..AG.ACGACGC.AGGGCCC.AC...CAAGAAGAAGAGAACGGG...ACAG.G

  
Islands  CGAA.AGAACA.CA.CA.GAAG..CAGC,,,C...GGCGC,,,..C.CC.AA..G..C.C..CCGGCAG.G.G...A...
5'-   CGAATAGAACATCATCATGAAGTTCAGCAAACTTTGGCGCAAATTCTCCTAATTGTTCTCTTCCGGCAGTGTGTTTATTT
          |         |         |         |         |         |         |         | 
  55340   2755330   2755320   2755310   2755300   2755290   2755280   2755270   27
          |         |         |         |         |         |         |         | 
3'-   GCTTATCTTGTAGTAGTACTTCAAGTCGTTTGAAACCGCGTTTAAGAGGATTAACAAGAGAAGGCCGTCACACAAATAAA
Islands  GC..A.C..G.AG.AG.AC..CAAG.CG...G,,,CCGCG...AAGAGGA..AACAAGAGAAGGCCG.CACAC,,,.,,,

  
Islands  GCCA..CAGCAA.CCC.CCAAC.ACAC.G.....AG.GCA.GGAGAAG.A.AGAG...,,,G.G.GC...AAGGCAAG.C
5'-   GCCATTCAGCAATCCCTCCAACTACACTGTTTTTAGTGCATGGAGAAGTATAGAGTTTAAAGTGTGCTTTAAGGCAAGTC
          |         |         |         |         |         |         |         | 
  55260   2755250   2755240   2755230   2755220   2755210   2755200   2755190   27
          |         |         |         |         |         |         |         | 
3'-   CGGTAAGTCGTTAGGGAGGTTGATGTGACAAAAATCACGTACCTCTTCATATCTCAAATTTCACACGAAATTCCGTTCAG
Islands  CGG.AAG.CG..AGGGAGG..GA.G.GAC,,,,,.CACG.ACC.C..CA.A.C.C,,,...CACACG,,,..CCG..CAG

  
Islands  CCGAA.A.A.,,,CCCAGA..CAGCAGC.AACCAC..G....GAGC..GAC..,,,G..AAC...AAG.G..ACC..CAC
5'-   CCGAATATATAAACCCAGATTCAGCAGCTAACCACTTGTTTTGAGCTTGACTTAAAGTTAACTTTAAGTGTTACCTTCAC
          |         |         |         |         |         |         |         | 
  55180   2755170   2755160   2755150   2755140   2755130   2755120   2755110   27
          |         |         |         |         |         |         |         | 
3'-   GGCTTATATATTTGGGTCTAAGTCGTCGATTGGTGAACAAAACTCGAACTGAATTTCAATTGAAATTCACAATGGAAGTG
Islands  GGC..A.A.A...GGG.C.AAG.CG.CGA..GG.GAAC,,,,C.CGAAC.GAA...CAA..G,,,..CACAA.GGAAG.G

  
Islands  AACA.ACAGGA.AGAGAGG.GAAGA.C
5'-   AACATACAGGATAGAGAGGTGAAGATC
          |         |        
  55100   2755090   2755080   
          |         |        
3'-   TTGTATGTCCTATCTCTCCACTTCTAG
Islands  ..G.A.G.CC.A.C.C.CCAC..C.AG

IGR  -   2755072  2755578  ()  12  yraB

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 - 2755072 2755578 yraB [COG0789]
1 Methanosarcina acetivorans str. C2A A NC_003552.1 + 2256238 2256749 isf-8 [COG0655|COG0500]
2 Streptococcus agalactiae B/C NC_004116.1 - 443304 443412 SAG0428 SAG0427 SAG0426 SAG0425 [COG1063 COG0789 COG1917 COG0599]
3 Streptococcus agalactiae B/C NC_004116.1 - 444268 444351 SAG0429 [COG0656]
4 Yersinia pestis strain CO92 P-g NC_003143.1 - 1065222 1065828 YPO0962 YPO0961 [- COG0582]
5 Yersinia pestis strain CO92 P-g NC_003143.1 - 1070325 1070858 YPO0967 YPO0966 YPO0965 [- - -]
6 Listeria monocytogenes strain EGD B/C NC_003210.1 + 2802459 2802542 lmo2728 lmo2729 [COG0789 COG1917]
7 Listeria innocua Clip11262 B/C NC_003212.1 + 2891940 2892023 lin2876 lin2877 [COG0789 COG1917]
8 Methanosarcina acetivorans str. C2A A NC_003552.1 - 25086 25196 dyhC [-]
9 Bacillus subtilis B/C NC_000964.1 + 2755072 2755578 adhA [COG1064]
10 Lactococcus lactis subsp. lactis B/C NC_002662.1 - 1947244 1947324 rmeA rlrB [COG0789 COG0583]
11 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 + 893566 893873 CAC0771 CAC0772 CAC0773 [COG0310 COG0619 COG1122]

0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  TACTAATAACCAGATTGAATACATGACCGAATTTTTATTTTTATGGTGTTTGTCTGTGGGTGCGTGTCAACTATAACCTT
5  TAACTTTTGAACCGAGTGAATTGGCGGATGCTAAATTTGGAACTCCGTACTGAGCAGAGGTAAATATAATTGGTGGTGCT
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  GATCTTCACCTCTCTATCCTGTATGTTGTGAAGGTAACACTTAAAGTTAACTTTAAGTCAAGCTCAAAACAAGTGGTTAG
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  TGAACCGAGTGAATTGGCGGATGCTAAATTTGGAACTCCGTACTGAGCAGAGGTAAATATAATTGGTGGTGCTGGGCCGG
5  GGGCCGGTGGTT--------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  CTGCTGAATCTGGGTTTATATATTCGGGACTTGCCTTAAAGCACACTTTAAACTCTATACTTCTCCATGCACTAAAAACA
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  TGGTT---------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  GTGTAGTTGGAGGGATTGCTGAATGGCAAATAAACACACTGCCGGAAGAGAACAATTAGGAGAATTTGCGCCAAAGTTTG
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  ___________________________________________________________________________ACGAA
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  ---------------------------------------------------------------------------GACTT
5  ---------------------------------------------------------------------------GACTT
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  CTGAACTTCATGATGATGTTCTATTCGGTGACATTTGGGCAAGAGAAGAAGAACTTTCATCCCGGGATCGCAGCATGATT
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  CCTATCCTTTCTTCATCATAAGTGTTGTAAATAAAAACATGCACTTATTTATGTTTTATGGTGTCTTCAACATAACGATA
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  AACTTATGAAATTACTCCAATAAATTCTGTCTTGGCTTTAAAATTTAAAGGAAAAATCATTACACAAACTATTTATATAA
5  AACTTATGAAATTATTCCAATAAATTCTGTCTTGGCTTTAAAATTTAAAGGAAAAATCATTACACAAACTATTTATATAA
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  ACAGTTTCTGCATTAATTACTGACTGTTTCTCAGCTTATAAATCAGGTTCATTTTAAATGGTTTTTTTAAAAAACCCTTG
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  AACCTTAAAGTCTGCTTTAAGG__CAAGGGTTTTTTAAAAAAACCATTTAAAATGAACCTGATTTATAAGCTGAGAAACA
1  ---------------------------------------CTTGCAAAAATATCCGTAAATTTCAATTTTTCTATTAGTTT
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  TAATTTTTTGTATAAGGAATTC--CTAACACTAACGCTGCAATAGTTATAAATATTAAAGGAGGAGTGGTAGCTAGTGGA
5  TAATTTTTTGTATAAGGAATTC--CTAACACTAACGCTGCAATAGTTATAAATATTAAAGGAGGAGTGGTAGCTAGTGGA
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  ---------------------------------TTGATCACTCCTGTATTTGCATGAAGAATTTTCAGGATGAGATCCTT
9  --CCTTAAAGCAGACTTTAAGGTTTATCGTTATGTTGAAGACACCATAAAACATAAATAAGTGCATGTTTTTATTTACAA
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  GTCAGTAATTAATGCAGAAACTGTAATCATGCTGCGATCCCGGGATGAAAGTTCTTCTTCTCTTGCCCAAATGTCACCGA
1  TCACCTCTTTTTCCTGAAGATGAAAGTAAGTTACTTAAAATTGAATGAAAGTTCTTCTTCTCTATTCTGTTTAGCTAAAA
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  GGGCACGGATTTGAAAAAAAACCTACAAAGTGAAAGTTAATTAATATTGAATTAGATTGATATTTTTTACAGAATAATAA
5  GGGCACGGATTTGAAAAAAAACCTACAAAGTGAAAATTAATTAATATTGAATTAGATTGATATTTTTTACAGAATAATAA
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  ATGTAGAGATCCCGGAATGAGATCCTTGTTATAGCGATCTCGGGATGAA-GTTCTTCTTCTAGAG---------------
9  CACTTATGATGAAGAAAGGATAGGTTCGT---------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------TAATTTCATACTTAATACAATTAC

  
0  ATAGAACATCATCATGAAGTTCAGCAAACTTTGGCGCAAATTCTCCTAATTGTTCTCTTCCGGCAGTGTGTTTATTTGCC
1  TATCTTTTTCCTGCCGGCGGTCTGCTTAAATCTACCCCGAATACGTTTGTTGAAATAAAGTTAAGAAAAGAGAAATTGAA
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  ATATGAATGACACTAAATTTAATATTTATTGGTTTTTGATGTTAAATATAGCCAGCGCACATGCGGTTTGAAGTGTCATG
5  ATAGCAATGACACTAAATTTAATATTTATTGGTTTTTGATGTTAAATATAGCCAGCGCACATGCGGTTTGAAGTGTCATG
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  GTCGTATATTTATTACTATAATTATAAGTTAGCTATCTTTTAACATAAAGGTGTAAATGTTAAATATATAATTTAGAATT

  
0  ATTCAGCAATCCCTCCAACTACACTGTTTTTAGTGCATGGAGAAGTATAGAGTTTAAAGTGTGCTTTAAGGCAAGTCCCG
1  AAATCCGCGATTTTTCCAGCTTTAAAAGGGGCATTTTGCAGAGCAGGTAAGTTTTGTGACTTTTTTAATAGATTCTTTTC
2  --------------------------------------------------------------------AACCATATGCGG
3  --------------------------------------------------------------------------------
4  AATATATTAGTGATTAATGTTGGAAGAGGTTAGAG-ATGGAGAAGTATAGAGTTTGGAGATAATTTGTAAAATTAACAGC
5  AATATATTAGTGATTAATGTTGGAAGAGGTTAGAG-ATGGAGAAGTATAGAGTTTGGAGATAATTTGTAAAATTAACAGC
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  -------------------------------------------------------------------------------T
11  GTTTTTTTATATAGTTAACATTTACACTTATTTTATACTATTTAGAGTAGGCTCCTGTGTTAACATAAATACGTGTATTT

  
0  AATATATAAACCCAGATTCAGCAGCTAACCACTTGTTTTGAGCTTGACTTAAAGTTAACTTTAAGTGTTACCTTCACAAC
1  AGTTTCTTTCTTGAAGTCATTAACATGACTTGTGAAATTTTCTCAAATAAATCTTTATGTTTTGATGTTATTTATGATTT
2  ATTTTTACAGATGTTTAATTTTCAAAATTTTTAAGTTTTT--CTTGACTTGAAGTTAACTCTAAGAGTTATAATGA--AG
3  -----------------------CCTGAGTGTTAGTTTTTTCCTTGACTTGGAGTTAACTCTAAGTGTTAAGATTAGGTC
4  TAAATTAAAAAATATCTTACTTAAATATAAGGTACTGGAG----------------------------------------
5  TAAATTAAAAAATATCTTACTTAAATATAAGGTACTGGAG----------------------------------------
6  ---------------------ATGATCATGGTTGCTTTTTCGCTTGACTTAAAGTTCACTTCAAGGAATAGAATAGTTAT
7  ---------------------ATGATCATGGTTGCTTTTTCGCTTGACTTAAAGTTAACTCCAAGGAATACAATCATTAT
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  TTGCAAACAAAGAACATTTAACTTTAGGTTAAATGTTTTTTTATTGACTTAAAGTTCACTTCAAGTGTTAAAATAAAAGA
11  AATTTGCATATCAAGGTTAAATTGAAATTTTTTTCAAAGTTACTTGACTTAGAGTTAACTTTAAGTCTTATAATATTATT

  
0  ATACAGGATAGAGAGGTGAAGATC________________________________________________________
1  AATTTAATATTTTTTCAATAGAGTTATTTTATTTTGTAAGATCTGAAAAATATGATTTACAATACAGAGCTTGAATGATT
2  TTATAGAAAAGAGGTAAGGTT-----------------------------------------------------------
3  AATACTAATGAAAGAAGGAAAATAAAG-----------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  AGAAAATCAGTAAAGGAGAATGGTC-------------------------------------------------------
7  AGAAAATCAGTAAAGGAGAATGGCT-------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  ATTCGCATAAATAAAATTTATTTGATTCAGGGGGAGATAAATTT------------------------------------

  
0  _______________________________________________________________________
1  GCTGTTTTATAACTAAAACAGCAGACTGTTCTTTACTAAGAGTGGTTGAGAAATGTTGGAGGAAACACCTT
2  -----------------------------------------------------------------------
3  -----------------------------------------------------------------------
4  -----------------------------------------------------------------------
5  -----------------------------------------------------------------------
6  -----------------------------------------------------------------------
7  -----------------------------------------------------------------------
8  -----------------------------------------------------------------------
9  -----------------------------------------------------------------------
10  -----------------------------------------------------------------------
11  -----------------------------------------------------------------------

Complementary Intergenic Regions

IGR  +  2755072  2755578  ()  6  adhA