BLISSBreaker Lab Intergenic Sequence ServerHome


Intergenic view options: Interleaved


NC_000964.1 Bacillus subtilis (- 2268933 to 2269228) circular

Term (99.93)%  ----------GTACCTTCTTACAATAGAAGGTAC----------------------------------------------
Islands  ACA.,,,,,,G.ACC..C..ACAA.AGAAGG.AC......G.A.C.A.AA..A..,,,,,...ACC.,,,.....A.CA.
5'-   ACATAAAAAAGTACCTTCTTACAATAGAAGGTACTTTTTTGTATCTATAATTATTAAAAATTTACCTAAATTTTTATCAT
          |         |         |         |         |         |         |         | 
          2269220   2269210   2269200   2269190   2269180   2269170   2269160   22
          |         |         |         |         |         |         |         | 
3'-   TGTATTTTTTCATGGAAGAATGTTATCTTCCATGAAAAAACATAGATATTAATAATTTTTAAATGGATTTAAAAATAGTA
Islands  .G.A......CA.GGAAGAA.G..A.C..CCA.G,,,,,,CA.AGA.A..AA.AA.....,,,.GGA...,,,,,.AG.A
Term (99.93)%  ----------CATGGAAGAATGTTATCTTCCATG----------------------------------------------

 
Islands  .A..AA..C,,,,.,,,.CCA.AA.AG.CAA....A...AG.G.A..ACAACCAA..C.G...A..GA.AGG.AA.,,,G
5'-   TATTAATTCAAAATAAATCCATAATAGTCAATTTTATTTAGTGTATTACAACCAATTCTGTTTATTGATAGGTAATAAAG
          |         |         |         |         |         |         |         | 
  69150   2269140   2269130   2269120   2269110   2269100   2269090   2269080   22
          |         |         |         |         |         |         |         | 
3'-   ATAATTAAGTTTTATTTAGGTATTATCAGTTAAAATAAATCACATAATGTTGGTTAAGACAAATAACTATCCATTATTTC
Islands  A.AA..AAG....A...AGG.A..A.CAG..,,,,.,,,.CACA.AA.G..GG..AAGAC,,,.AAC.A.CCA..A...C

 
Islands  ........C.A.GA...A.GAACAAG...CC..A.AA....C,,,,,,,,,.,,,,,,.A.GG..GAA...AGA...A.C
5'-   TTTTTTTTCTATGATTTATGAACAAGTTTCCTTATAATTTTCAAAAAAAAATAAAAAATATGGTTGAATTTAGATTTATC
          |         |         |         |         |         |         |         | 
  69070   2269060   2269050   2269040   2269030   2269020   2269010   2269000   22
          |         |         |         |         |         |         |         | 
3'-   AAAAAAAAGATACTAAATACTTGTTCAAAGGAATATTAAAAGTTTTTTTTTATTTTTTATACCAACTTAAATCTAAATAG
Islands  ,,,,,,,,GA.AC.,,,.AC..G..C,,,GGAA.A..,,,,G.........A......A.ACCAAC..,,,.C.,,,.AG

 
Islands  ..CC...A.A..,,,,,,.G.AA.CCGGA..GC,,,C,,,.GGGGAGG....ACAA
5'-   TTCCTTTATATTAAAAAATGTAATCCGGATTGCAAACAAATGGGGAGGTTTTACAA
          |         |         |         |         |       
  68990   2268980   2268970   2268960   2268950   2268940   
          |         |         |         |         |       
3'-   AAGGAAATATAATTTTTTACATTAGGCCTAACGTTTGTTTACCCCTCCAAAATGTT
Islands  AAGG,,,.A.AA......ACA..AGGCC.AACG...G...ACCCC.CC,,,,.G..

IGR  -   2268933  2269228  ()  17  sunA

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 - 2268933 2269228 sunA [-]
1 Methanosarcina acetivorans str. C2A A NC_003552.1 - 2482568 2483264 pepO [COG3590]
2 Leptospira interrogans serovar lai str. 56601 chromosome I Sp NC_004342.1 - 2232073 2232778 LA2250 [-]
3 Shigella flexneri 2a str. 301 P-g NC_004337.1 - 1106817 1107064 yceJ yceI [COG3038 COG2353]
4 Methanosarcina mazei strain Goe1 A NC_003901.1 - 3814018 3814686 MM3139 [-]
5 Clostridium tetani E88 B/C NC_004557.1 + 2286958 2287149 CTC02158 [COG1472]
6 Streptococcus pyogenes B/C NC_002737.1 - 413291 413463 pepQ [COG0006]
7 Salmonella typhimurium LT2 P-g NC_003197.1 - 4654332 4654740 STM4412 STM4412 [COG0044|COG1228 COG0477]
8 Rickettsia conorii Malish 7 P-a NC_003103.1 - 531925 532110 RC0541 RC0540 RC0539 [- - COG2917]
9 Clostridium perfringens B/C NC_003366.1 + 67968 68346 CPE0057 [COG1179]
10 Clostridium perfringens B/C NC_003366.1 + 165705 165998 CPE0126 [-]
11 Methanococcus jannaschii A NC_000909.1 - 275413 275598 MJ0292 [-]
12 Buchnera sp. APS P-g NC_002528.1 - 633494 633733 ilvD [COG0129]
13 Borrelia burgdorferi Sp NC_001318.1 - 699966 700051 BB0659 [COG1384]
14 Escherichia coli K12 P-g NC_000913.1 - 1118270 1118529 b1057 yceI [COG3038 COG2353]
15 Mycoplasma pneumoniae B/C NC_000912.1 + 214377 214529 MPN161 [COG4487]
16 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 + 1419950 1420000 CAC1277 [-]

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CAGCATCGGCAAAACTCTGATGTTTTCAAAAAAATGCTTTAATATGTATAATCCCCCTCAGGATTAATCGGTAATCCCGT
TATTTTTATCTAAACGTAGGATTCATTTTGAAAATGAATTCTGTTTTATTAAAACTATAGAACAAAGTGGCTACTTAGAA
TTTTCCGCACTGACATAAACTGACAAATATTTAATCTCCCTTTCATTTAGCGTGAAAAATTGA-----------------
CCTAACTAATTCCCCCTATAACTGTTATTTTCACTCCTGTTACTTGTCATCTTCGGACACAGTTCTCGTTGACACAGTTC
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GTTCGCTTTTACATAAG---------------------------------------------------------------
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TTTAAATTCCTCCTCAAATTAAATTCATAAAGTTATTATATATTAAAAAAAGATCATATCATAGA---------------
10  ATAAAAATCTATTATAGATTATTTAA------------------------------------------------------
11  AAAAGTTATACATCCAAGGGTTTTGCTCCTATTGATATGCTCTCAAATCTTTATTAAAGTGAGGTTGTCTTGGCAACCT-
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  TTTTCCGCACTGACATAAACTGACAAATATTTAATCTCCCTTTCATTTAGCGTGAAAAATTGA-----------------
15  --------------------------------------------------------------------------------
16  ATAAAATA------------------------------------------------------------------------

 
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AAAAAGATATTTTTGCAATTCATTATAAGCCTTACCGCGCTCTATTTTGTGAATTTTCGGTTG-----------------
AATTACATAATAGTGTATCCAACCAATCATTTACACATCAATTCAAAGTAAGAAAACCGGGGCGAATCGGCTTTGCTAAA
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TCGTTAAATGTCGCTCTGATATTCCCGGGTTTCCTTCAACAGGTATACTCTGTCAGGATCACCCGTATTCATTAATTCCT
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10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------

 
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CTGTGCTTTTAACTCCAATCAATAAATTGTATGAAAGAAACGTAATGTGATATTTCGTTTTAATTGATTATAGAACGCGA
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TAATATTTATAGATAGAAAAAGTTTTAAGTCGTGTAATCTATTCTTAATTTTTTTATTTTATTCACGTGAAGTTTATGTA
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10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------

 
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TCTGTTGAACTCTCCAGAACCCCAGCAGGCCTCTCTAAGGATCGGCATTCAGGGAGTTATCTCTAAAGTTTGAAAGAGTG
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GATTTGACTCTTTTACTCTTAAGTATTACTGAGGACATCATTTTCCAAAAACGGCTTCTTACTGCTTTTCCCGGCTATAA
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10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------

 
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TTTTGCTGTGCTGAGTTTAGTTACGCCTCATAAAGTTGGTTACCTAAATTTTTATCACAAAATTCCGTTTAGATTCAAAA
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AAGTGGAATTTGAAATATACCTGTTCAATGAATTTCAGGATAGCTAATCTCTTAATT-----------------------
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10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------

 
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TATTATTCATCCTTATAAAATTAGTTACCTAAGAATCTATCACAAAGTGTTGCTTCTGTAAGTTTGATAAAATCCAATGC
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10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------

 
________ACATAAA_AAAGTACCTTCTTACAATAGAAGGTAC_TT_TTTTGTATCTATAATTATTAAA___AATT___T
--------ATAGTTT-TTTTCGCTTGATGGTTTCAATCAAGAA-AT-GAAAAAATCACTGATTTAGAAACTGAATT---T
AAAAGCGCAATTGAG-GATCAAGTGATTTTCAATTGAA--TAT-TTGTTTTGTGACTTTACTG-TTATA---TTTTCAAT
--------ATGAGAT-TATTCCTGCTTCTACAGCACTCACCAG-AC-ATCTCTGATGCTGAACCCACTA---AACT---T
--------TTTGCTT-TCAGGGTCCTAACGATCTATCTAAAGA-TT-TAAGCCCTTATCACAGGCTTCT---ATGA---G
------------------TCTGACTTTCCCCCTATAGTCTTAG-TA-TAACTTGATTATAATTAATAAA---A-TT---T
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--------CGTCAAG-ATAAAGGCTCTCATAGTAATGAGGGCC-TT-TTTATTGGCTA--ATGAATAGA---A-------
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--------AATTTAA-AAAGTAAAT----AGATTTGAAAGCACATT-TTATAATTTTATTATTAATTAA---AATT---T
10  --------AGATAAAGAAAGTAGGTATTTAATTAAGTACCTAC-TT-TTTTGTATTTATAATTA---AA---TTTT---G
11  --------CGCTCGG-GTATCCCAATAGGGGTTTTCCCCATGG-CA-ATATAAGCCTATTATCACCAAA---AGTTA--T
12  -------------------------------------------------------------------AA---AATT---C
13  -----------CAAA-CATTAAACTGCATTTTTTTAAATTCTT-GA-AACTTGAAAAACAAAATGCTAA---AATT---T
14  --------ATGAGAT-TATTCCTGCTTCTACAGCACTCACCAG-AC-ATCTCTGATGCTGAACCCACTA---AACT---T
15  --------------------------------------------------------------------------------
16  --------CTGTAAA-AAAGTACATCCTTAAAA-AGGAGGTGC-TT-TTTTATAT-------------------------

 
ACCTA_____AATT_____TTT_____ATC_AT_TATTAATTCAAAATA_____AATCC____A_TA_ATAGTCA_ATTT
ACTTT-----TATT-----TT------ATC-AT-GATTAATTTAAAATA-----ATTACTTAGA-TA-ATTGTAT-ATTA
AAAAA-----CATT-----TAT-----ATC-ATATCTTAAA--AAAATT-----ATTTT----T-T---TTGTTA-AATT
ATGAA-----GATT-----CTT------TC-AT-TATTAATTCAAAATT-----ATTGA----AATA-AAAATAA-ATAT
GTATA-----AATG-----TGT-----ACA-AA-ACAGGTTTGAGGGCT-----ATGGA----A-TA-CATGCAA-AGGG
AACTA-----TATC-----TTT-----AT-----TAATTATTAAAAGTT-----TCTT-----A-CA-ATA-TAA-AATA
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--CAC-----AGTT-----TTT-----ATC-AT-TATTAATTTAACATTCACGGAATGA----A-TA-ATACTTT-ACCT
---------------------------ATA-AA-TATGAAA-CAAAATA-----AAAT-------TC-AAAGACA-AAAA
ACCTA-----AATTAGGGCTTA-----ATC-CA-GGAAATTTTATATGA-----ATTTT----C-TAGATAGAAATAAGT
10  AG--------AATA-----TTA-----ATCCAT-AGATTATTTAAATTT-----AATAA----A-TA-TTAGAAT-AATT
11  AAATA-----AGAT-----TT------ATC-AT-TATTAAT-CATTATA-----AATTC----C-TA-ATAAG-------
12  ACCAATTGAAAATT-----TTTTAATAATC-AT-TATTATTACAAAATA-----AATCA----A-TA-TCACT---ATTA
13  ACCTA-----AATT-----TAA-----ATT-AG-GAATAAAAT-------------------------------------
14  ATGAA-----GATT-----CTT------TC-AT-TATTAATTCAAAATT-----ATTGA----AATA-AAAATAA-ATAT
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------

 
TATT_TAGTGTATTAC_AACCA_ATTCTG__________TTTA__TTGAT__AGGTAATAAA_GTTTTTTTTCTATGA_T
TATA-ACGGGAGCAAA-CGAGA-CAAACG----------AATG--AAGAA--TAATCATCAG-GAATATAGAATTGCT-G
TTTA-TA-TGTAT--------A-CTTCCT----------TTTT--TTGAT--TT-TATTA----TTTTTAATATTTTACT
CATT-CAATTTGTTAT-TTTTG-TGTTGC----------AATT--CATTC--TCCGACACGC-CATTTTCTTTCTCTC-G
TATT-TATCTCATTAA-GATTATAATATG----------ATTAATTTAATCTACATAATAAA-GTAATTAATTTA--A-T
TATT-TCATCTTTTAT-GACAT-ATTGCT----------TTTA--TATA---AGGCAATAAT-TGGATATAATTAAAC-A
-----TTTTTATCTTC-CTTTC-TATTTG----------AAAA--TGACG--CTTTCAAAAA-GTATTTTAGC-ATGA-T
GATT-T--TTTATTAA-AAAGG-GTTGAA----------TACG--CTCAC--GGTTTCTCTA-AAAAGCTTAAGATAA-T
AATTATATTTTATTAT----CT-ATCCTT----------GTCA--C--AA--TGATAATAATTGTATATCTTATAGCA-T
TTTT-AAAAGAATTAT-ATGTT-AATATGAATGAAAAACTTTA--TTTAT--ATTAAGTAGA-ATGTATATAATATTA--
10  TATA-TGTTAAATTATTAACAA-AATC---------------A--TTGAT--TTTTGGTAAA-ATTTTAATA-TAGGG-T
11  --------------------------------------------------------------------------------
12  TATA-AATAATATAAT-TCCTA-CTTCTT----------CTTA--ATGCT--AATTTCTAAA-AAAATATATATTTCC-A
13  --------------------------------------------------------------------------------
14  CATT-CAATTTGTTAT-TTTTG-TGTTGC----------AATT--CATTC--TCCGACACGC-CATTTTCTTTCTCTC-G
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------

 
TTATGAACAAGTTTCC____TTA_T_A______A_TTTTCA__AA_____AAAAAATA___AAAAATATGGTTG__AATT
AATGATTGATCCTGTT----CCG-A-A------T-AAACGC--AC-----CTCGAAGG---GTATTTTCGGAGC--AGCT
TTTTGAATATAATACT----TAAGT-A------A-TTTTTATGTA-----ATAAAATA---AAGTTTTTAAAAA--TT--
CAAATTCGTA----------------------------------------------------------------------
TTTTGTAGA------------TA-T-A------A-TTATTA--AA-----AAATATTTTGGAGGAATATCGTGG--GACT
ATATCAGTACCTTTTT----GGG-A-A------A-GGAAGA--TT-----TAA---------------------------
TTGT-AACCACTTTCAAGTGTTA-T-AGGTTAAT-TTTTGA--AA-----AAGTTTTC---AAAAATTAACTCG--AAGC
AATTGTTTTGTGAATG----CTC-C-C------A-GACTCC--CA-----TGGACTTA---CGCCCTAAATATT--AGCA
TAATAAAAA--TTGCA----GGA-T-A------AATTTTGT--AATTATTAAAAATTT---AAAACTCAAATTG--AGTA
--ATGAATTTGTGTGT----TTA-TTA------A-GTATAA--GA-----ATAAACAT---TATAATAAGTTTG--AGAT
10  ATATAAA-----TTGA----TTA-T-A------A-GTT-----AA-----GAGAATTT---GATTACATCTTTACTAATT
11  --------------------------------------------------------------------------------
12  ATA---AAAATTTTC--------------------TATTAC--AA-----TAAAAATA---AAAAATTTATTCA--AATA
13  --------------------------------------------------------------------------------
14  CAAATTCGTTTTGGAT----GCA-C-T------T----------------------------------------------
15  ----------------------------------------------------AAGGTA---AATAATTTAGCT-----TT
16  --------------------------------------------------------------------------------

 
TA_____GA___TTTATC______T__TCCTTTAT_AT_TAAAAAAT_GTAATCCGGATTGCAAACAAATGGGGAGGTTT
GT-----AT---CTGGGG------C--TGCAGTAA-AG-GAACGGGA-CTCTCAGGGTTTTTTCCTCTTAATCATCTGTG
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TATTGGTGAG--TTTAAGGAA---T--TTCTTTATGAG-TACAAA---GTAATTCCCCTGGCAATTGCTTTGATT-----
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TT-----GA---TTTTTT------A--AGCTTTTT-TT-GAAAAAATAGTAAGTAGAAAGAAGGTTAGCCT---------
AG-----CG---CTAAAG------T--CTTATTTA-GT-GCATAAGC-CCGATTACCTTTTTAATAAGGTATCCTAAGCT
TA-----TA---AGCATC------T--TACTTTAA-AC-TTTAATTA-TAGT----------------------------
--------A---TTTATT------T--TAGAATAT-AT-TATAGA----------GGATT---AACATA-GGGGAAATTT
10  TA-----TA---TGTTAG------T--AATAATAT-GT-TTAGCTTT-AAGCAAAAGAAGGGGAGAATTAAT--------
11  --------------------------------------------------------------------------------
12  CA-----AACTTTTTATA------ATATCATTCAT-AT-TAAATAGT-TTTTGTAAAATTTTTATTTTTGGAGTTCTCTA
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  TT-----GT---TTAATCAGCAATT--TCCTTTAT-ATATAAAAAAG-GTAATACAACGATAGTATAGGGGTTCTAGGGG
16  --------------------------------------------------------------------------------

 
TACAA___________________________________________________________________________
TTGTGATATAACGAGCCCGCAGTTAAAGAGCTGATCTTGTCTAAACAGGACTTACGCAGTTGAACTGGAAAATCAGTTGC
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CTCCCTACCAATAACCGTATTTTTAATCCAACATAACATCCGCTCAAAACACACTTTTTAATATATTTTTAAGGGCTGCC
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TATTAACTTAAGAAGGAGAGAAATTTT-----------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  AA------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  AGTTAATTTGCAGAAAACAGCTAAACCATTGTTTCACCTGGCAAACAATTTAAAGTTAATGCCAT---------------
16  --------------------------------------------------------------------------------

 
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ATTAAATTAGGAATTTCTACAAACCATACGAGCAGCCTCTACATGCTGCAGTTTAAGAGGCTTCCCAGGATCCATAGGAG
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ATAATTATTTACTATTTTAAGAGATT------------------------------------------------------
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10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------

 
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TTGAGAGGGCATGGAAAGAAAGGGAGTAATATATCTATTCGCTTTTTGCATTTCACTTATCAACACTGTAACCCCTGTAT
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10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------

 
_________________
CTTCTGGTTCTTCCGAA
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10  -----------------
11  -----------------
12  -----------------
13  -----------------
14  -----------------
15  -----------------
16  -----------------