BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (+ 1937732 to 1938179) circular

Islands  CC.,,,,G.,,,CC.GA...A..,,,...,,,,,.,,,...AAC...G..AAG.A.A.A.C.....GC..A.....G,,,
5'-   CCTAAAAGTAAACCTGATTTATTAAATTTAAAAATAAATTTAACTTTGTTAAGTATATATCTTTTTGCTTATTTTTGAAA
          |         |         |         |         |         |         |         | 
          1937740   1937750   1937760   1937770   1937780   1937790   1937800   19
          |         |         |         |         |         |         |         | 
3'-   GGATTTTCATTTGGACTAAATAATTTAAATTTTTATTTAAATTGAAACAATTCATATATAGAAAAACGAATAAAAACTTT
Islands  GGA....CA...GGAC.,,,.AA...,,,.....A...,,,..G,,,CAA..CA.A.A.AG,,,,,CGAA.,,,,,C...

  
Islands  GAG,,,,C..C....A..AGCG.A.G.A.ACCCGG...A.GG.G.GAA.,,,,,CA.A....,,,.GA.A.G..G...AG
5'-   GAGAAAACTTCTTTTATTAGCGTATGTATACCCGGTTTATGGTGTGAATAAAAACATATTTTAAATGATATGTTGTTTAG
          |         |         |         |         |         |         |         | 
  37810   1937820   1937830   1937840   1937850   1937860   1937870   1937880   19
          |         |         |         |         |         |         |         | 
3'-   CTCTTTTGAAGAAAATAATCGCATACATATGGGCCAAATACCACACTTATTTTTGTATAAAATTTACTATACAACAAATC
Islands  C.C....GAAG,,,,.AA.CGCA.ACA.A.GGGCC,,,.ACCACAC..A.....G.A.,,,,...AC.A.ACAAC,,,.C

  
Islands  GA...A..AC...A...A.G.G.,,,.C,,,GAG,,,GGCAAGAGAA.GGGAAG,,,.GA..ACA..G..AA.AGGG.AC
5'-   GATTTATTACTTTATTTATGTGTAAATCAAAGAGAAAGGCAAGAGAATGGGAAGAAATGATTACATTGTTAATAGGGTAC
          |         |         |         |         |         |         |         | 
  37890   1937900   1937910   1937920   1937930   1937940   1937950   1937960   19
          |         |         |         |         |         |         |         | 
3'-   CTAAATAATGAAATAAATACACATTTAGTTTCTCTTTCCGTTCTCTTACCCTTCTTTACTAATGTAACAATTATCCCATG
Islands  C.,,,.AA.G,,,.,,,.ACACA...AG...C.C...CCG..C.C..ACCC..C...AC.AA.G.AACAA..A.CCCA.G

  
Islands  .C.......,,,GCCAG...GCAAGGAA.G.....A..CG.AGG,,,,.AA.AGAGAAGGGG.CGACAGAG.AACA.C.G
5'-   TCTTTTTTTAAAGCCAGTTTGCAAGGAATGTTTTTATTCGTAGGAAAATAATAGAGAAGGGGTCGACAGAGTAACATCTG
          |         |         |         |         |         |         |         | 
  37970   1937980   1937990   1938000   1938010   1938020   1938030   1938040   19
          |         |         |         |         |         |         |         | 
3'-   AGAAAAAAATTTCGGTCAAACGTTCCTTACAAAAATAAGCATCCTTTTATTATCTCTTCCCCAGCTGTCTCATTGTAGAC
Islands  AG,,,,,,,...CGG.C,,,CG..CC..AC,,,,,.AAGCA.CC....A..A.C.C..CCCCAGC.G.C.CA..G.AGAC

  
Islands  GC.A.GACAA.A..C..C.CG,,,,,,C..CC.AA..CG.CA.A..G.GA.A.AA.,,,,C.CG..A.G..,,,,,,.C.
5'-   GCTATGACAATATTCTTCTCGAAAAAACTTCCTAATTCGTCATATTGTGATATAATAAAACTCGTTATGTTAAAAAATCT
          |         |         |         |         |         |         |         | 
  38050   1938060   1938070   1938080   1938090   1938100   1938110   1938120   19
          |         |         |         |         |         |         |         | 
3'-   CGATACTGTTATAAGAAGAGCTTTTTTGAAGGATTAAGCAGTATAACACTATATTATTTTGAGCAATACAATTTTTTAGA
Islands  CGA.AC.G..A.AAGAAGAGC......GAAGGA..AAGCAG.A.AACAC.A.A..A....GAGCAA.ACAA......AGA

  
Islands  AACA.C,,,,.CGAA..CG.A..GAA..GA.G,,,,CGGGAGG.,,,.
5'-   AACATCAAAATCGAATTCGTATTGAATTGATGAAAACGGGAGGTAAAT
          |         |         |         |         
  38130   1938140   1938150   1938160   1938170   
          |         |         |         |         
3'-   TTGTAGTTTTAGCTTAAGCATAACTTAACTACTTTTGCCCTCCATTTA
Islands  ..G.AG....AGC..AAGCA.AAC..AAC.AC....GCCC.CCA...A

IGR  +  1937732  1938179  ()  12  alsT

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 + 1937732 1938179 alsT [COG1115]
1 Clostridium perfringens B/C NC_003366.1 - 1698972 1699210 asrA asrB asrC [COG1145 COG0543 COG2221]
2 Buchnera aphidicola str. Sg (Schizaphis graminum) P-g NC_004061.1 + 539098 539291 ybeD [COG2921]
3 Clostridium perfringens B/C NC_003366.1 + 48260 48589 plc [-]
4 Nostoc sp. PCC 7120 Cya NC_003272.1 - 3292944 3293279 all2699 [COG0642]
5 Chlorobium tepidum TLS Ch NC_002932.3 - 2019652 2019738 ssb-2 [COG0629]
6 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 - 933201 933944 CAC0806 [-]
7 Sulfolobus tokodaii A NC_003106.1 + 2457658 2457939 ST2456 [-]
8 Methanococcus jannaschii A NC_000909.1 - 106420 106610 MJ0109 [COG0483]
9 Mycoplasma pulmonis B/C NC_002771.1 + 191527 191655 MYPU_1850 [COG0270]
10 Vibrio cholerae chromosome I, complete chromosome P-g NC_002505.1 + 906207 906378 VC0845 [-]
11 Borrelia burgdorferi Sp NC_001318.1 - 25624 25752 BB0026 BB0025 [COG0190 COG0217]

0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  ATTAAAATCCTTTGCCTTATAATTTATTTCAAATTTTATTCCATCCCTTA------------------------------
4  ATGGTTGAGATATAAAAGCAACCACAATACTGATAAATCCTGAAATATGCCTGAAAGAAGACACGATGTTAAGCGTGTCT
5  --------------------------------------------------------------------------------
6  ATACTGTATACCTCCAAAATTTTATTGATCTTAAACTCATTGTAATACCTCACCAATAAAATTCCTTAACTACCAAATCT
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  TTTTTACTCCTATTTTTACCTGTGTTTCACATTTTATTCTAACTTTAATTTTT---------------------------
11  TATTCTCCATTCT-------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  TTTCTATTTTTAATTCTAATTAGTATGTAAATAATTAAGATATATTTATTCCGCTTAAATTTGCTTTTTTCTTTGCCTTA
5  --------------------------------------------------------------------------------
6  TACTAAGTGCTAATTGAAATATATTGTGCTGCATTATTTACTATTAAATTTAAGTCTTGATTAAGATTACCACAGTTTCA
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  TCTTAATAAAATATGTGAATTTCCGAGGATAAATATTTATATAAATAACCCGTGATTTTATTCATGATATTTTGACCGTA
5  --------------------------------------------------------------------------------
6  TAAATAAATCAACTTTTTTATATTATTTATATTCCAAATATATGTTGTTATAAAATACTTATTACTTAATTTCGCCTTAT
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  CTTT----------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  AATATTGACATAAGAATATATATTTACAGTATTTTATTATAAAGTTGACAAATAAACCTTAACTTATTTTCGATATTATT
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  ATAAATTTTTTAATATATATTAAGCTAATCTATACTTTATGTCTTAACTTTTTTATTTTTAAGCTTCTTTTTAATTTCAT
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  CTCTTACTTCAAGATTACTATATAATTCAGCTCCTACTTCCATCATGTTTTTTTCTATTGCAGCCATTTTAAGTTTTGTT
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  ____________________CCTAAAAGTA__AACCTGATTTATTAAATT__T__AAAAATAA_A__TTTAACTTTGTTA
1  --------------------------------------------------------------------------------
2  ---------------------------------------------AAATT--T--CTCATGAA-ATATTTAAAAAAAATA
3  --------------------TATTATGCGT--AAAAATTCTTATTAAATT--A--AAAAACAAGA--TTTAACTTATTAT
4  --------------------TACTGTAGAC--AATGTAATATTTAAAATT--T--AAAAATAT-T--TTTATATTTGTTA
5  --------------------------------------------------------------------------------
6  CTAGTTAGCTTTTTACTCATATATATTTCC--TCCTTTCATTATTATATT--C--TTCAATAA-A--TTT---TTTTTTA
7  ------------------------TTTTTT--ATCATACCGTATTAT-TT--T--AAAGATAA-A--TTTAAATTTGTGA
8  ---------------------------------------------TGAAA--G--CTAAATAT-A--GAAAGTGGGGCTG
9  ---------------------------------GATAAATTTTTTAAAATATT--AGCTAACA-A--TTTTAAATTGTTA
10  --------------------TATTTTTTTT--ATGCTAACTCGTTAAATT--TTTAAAAATAA-A--TTTAACAAAAT--
11  --------------------TTTAAAATTATTATCCTTGTTTATTATAGT--T--TAAAATAA-A--TTTAATTACAATT

  
0  AGTAT___ATA_TCTTTTTGCTTATTT___TTGAAAGAGAAAACTTCTTTTA____TTAG_CGTATGTA____TACCCG_
1  --------------------------------------------------------------------------------
2  AA-AT---ATA-TTATTTTCTATAATA---TCAATATGTTAAACTAATTAGA----TA-----TATTAA----TATCTA-
3  AGCAC---TAA-TAATTGTA---AATT---TTCATATTAAAAATAAGTTTAACAATTTAG-AGTGGGTAAGGTTAGATGT
4  AGAAT---ATCGTGATTTTCCTGAACTTAATTTAAAGAAAAGCA------------------------------------
5  ----------------------------------------------------------CG-GCCGATCG----CACCCG-
6  --TAA---ATA-TATTTTGATAAATTT---TTTAATAATTAAATATATACAA----TAAATCCTATA-A----TATACT-
7  AGTTT---A-A-TAATTA-----ATTT---TTGAT-GATAGCACCTGAATTA----GCAA-TAAAGATAA---TATTCA-
8  AACAT---AGT-AAAGCCCACTCGGAG---TATAGTAATAGAGGTTCCTCTA----TATG-CTTGCGAT----ACCGAT-
9  GTTTTTTTATA-TTTTTTTAATTTTTT---TT--ATTTAAAATGTACTTTAA----TAAA-TTTATCTT----TGTTAA-
10  -GTAT---AAA-GCGATTTTTTTCATT---TTTAACAAGGATAATTAATTC-----TTGT-TTTTTGTT----TAATAG-
11  TGAAA---TTT-GGTCGTTTGACTTTC---CTTATATTGACAATCTAAGTAT----AATA-TTAAGGTA----ATCTTA-

  
0  GTTTA_________TGGTGTGAATAA__AAACATATTTTAAA_TGATATGTTGTT_______TAGGATTTATTACTTTAT
1  --------------------------------------------------------------------------------
2  TTTTT---------TT------ATAA--AAA---ATTTTAAA-TGATATGTTTATATAAAAATATAACAAATTAATTAAT
3  GTTTAATTGAAATTTGAATTGTATTC--AAAAATATTTTAAA-AAATATTCAAAA-------ATTTAGTGAGGTTATGGT
4  --------------------------------------------------------------------------------
5  GTTTA---------TTGTGTGAATGACGAAACGATTCCATTT-GTGAACAAAAAG-------GAGTAGATGCTATGGCGG
6  GTGTA---------TTTAATAATTTA--AAATTTATAATCGCCTTACATATGCAA-------TATGATTAAA-ACATTTT
7  CTTTA---------ATAAGT--ATTA--TTACTGGTTTTTAC-GGA------GTA-------ATGCATATATTATTTTAT
8  AACCT---------ATCTTAAAATAA--AGGAAGAGATGAA---GAAATCTTAGA-------TATTGACTATTATCTTAT
9  CTAAG---------GATTAGAAGAAA--AAGCTA----------------------------------------------
10  GCTTA---------AG----------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  T___TATGTGTAAATCAAAGAGAAAGGCAAGAGAATGGG__AAGAA_ATGATT___ACATTGTTAATAGGGTACTCTTTT
1  ---------------------------------------------------------------ATAAGCTTTAGAAATTA
2  T---TTTTT-TAAATTAAAAAATTCATTAAAAATAACAC--CAGGA-TTAATT---A-----------------------
3  A---ATTATATGGTATAATTTCAGTGCAAGTGTTAATCG--TTATC-AAAAAA---GGGGAGATTAATACTTGAAAAAAA
4  --------------------------------------------------------------------------------
5  A---ACTGAAA---------------------------------------------------------------------
6  A---TATGTTTTTGTATTATGATATAATAAAACTCACTT--AAATA-ACACTA---TATTTTAACAAAGGAAAGGAAATA
7  A---AAT-TGCAACTTCCAG-GCTTTGAAGGAAAATGGGTTATGAACATGTCTGCAACATTATTAACTATTTCCGTAGTA
8  TTTGTATATTTAAATTTAAAAATAAAGCAT-AGGATGAG--AAA------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  TTTAAAGCCAGTTTGCAAGGAATGTTTTTATTCGTAGGAAAATAATAGAGAAGGGGTCGACAGAGTAACAT_CTGGCTAT
1  AAAGCTATAAGGGGTTATTTATTTTTTTGTTTTGTAATTTAAGAATTTTTACAGTGTAACAAAAATCACATACTCAATAA
2  --------------------------------------------------------------------------------
3  ATAACGGGGGATATAAAA--------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  ACT-----------------------------------------------------------------------------
7  TTAATTATATTAGCCTATACTTTTATTTAGTCTCCTTAATAACTTTGTAAG-----------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  GACAATATTCTTCTCGAAAAAACTTCCT__AATTCGTCAT_ATTGTGATATAATAAAACTCGTTATGTTAAAAAATCTAA
1  AACTTTATTCTTAT--AATAGACTTTGTTAAATTCTTAATTATTAAAATATTATAAACAAATGAAAGAAAAAAACTTTCA
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  C_ATCAAAATCGAATTCGTATTGAATTGATGA_AAACGGGAGGTAAAT_________________
1  TTATTATAATCTA-TTAGAATTTATTTAATTTCAAAATAAAGTTAAATTTAAGAGGTGTTTTATT
2  -----------------------------------------------------------------
3  -----------------------------------------------------------------
4  -----------------------------------------------------------------
5  -----------------------------------------------------------------
6  -----------------------------------------------------------------
7  -----------------------------------------------------------------
8  -----------------------------------------------------------------
9  -----------------------------------------------------------------
10  -----------------------------------------------------------------
11  -----------------------------------------------------------------

Complementary Intergenic Regions

IGR  -   1937732  1938179  ()  13  ynfC