BLISSBreaker Lab Intergenic Sequence ServerHome


Intergenic view options: Interleaved


NC_000964.1 Bacillus subtilis (- 1903519 to 1904249) circular

Term (99.20)%  --------------------------------CCCGGCTATTGCCGGG--------------------------------
Islands  ACGCCA..AACA.C.CC.CG.....AC...CCCCCGGC.A..GCCGGG.C......G...G.GCAC.A.A.G.A.A...C
5'-   ACGCCATTAACATCTCCTCGTTTTTACTTTCCCCCGGCTATTGCCGGGTCTTTTTTGTTTGTGCACTATATGTATATTTC
           |         |         |         |         |         |         |         |
           1904240   1904230   1904220   1904210   1904200   1904190   1904180   1
           |         |         |         |         |         |         |         |
3'-   TGCGGTAATTGTAGAGGAGCAAAAATGAAAGGGGGCCGATAACGGCCCAGAAAAAACAAACACGTGATATACATATAAAG
Islands  .GCGG.AA..G.AGAGGAGC,,,,,.G,,,GGGGGCCGA.AACGGCCCAG,,,,,,C,,,CACG.GA.A.ACA.A.,,,G

 
Islands  .GAAGC..CCC...C.A.G,,,,CC..GG.GAC.GAA.C.G,,,,,GAA.AG.GAA.A...AG.ACA.AG...AG..AG.
5'-   TGAAGCTTCCCTTTCTATGAAAACCTTGGTGACTGAATCTGAAAAAGAATAGTGAATATTTAGTACATAGTTTAGTTAGT
           |         |         |         |         |         |         |         |
  904170   1904160   1904150   1904140   1904130   1904120   1904110   1904100   1
           |         |         |         |         |         |         |         |
3'-   ACTTCGAAGGGAAAGATACTTTTGGAACCACTGACTTAGACTTTTTCTTATCACTTATAAATCATGTATCAAATCAATCA
Islands  AC..CGAAGGG,,,GA.AC....GGAACCAC.GAC..AGAC.....C..A.CAC..A.,,,.CA.G.A.C,,,.CAA.CA

 
Islands  .CA.AAG.GAGCGCA..CAA...A..GCAG..AC,,,G,,,C....A.,,,C.C...GAGGA.CC.ACA.,,,,GGAGAG
5'-   TCATAAGTGAGCGCATTCAATTTATTGCAGTTACAAAGAAACTTTTATAAACTCTTTGAGGATCCTACATAAAAGGAGAG
           |         |         |         |         |         |         |         |
  904090   1904080   1904070   1904060   1904050   1904040   1904030   1904020   1
           |         |         |         |         |         |         |         |
3'-   AGTATTCACTCGCGTAAGTTAAATAACGTCAATGTTTCTTTGAAAATATTTGAGAAACTCCTAGGATGTATTTTCCTCTC
Islands  AG.A..CAC.CGCG.AAG..,,,.AACG.CAA.G...C...G,,,,.A...GAG,,,C.CC.AGGA.G.A....CC.C.C

 
Islands  G......G.A.AG,,,CA.CG.A....A.C.CA....AC...G.C.A...A.A.CAG..G.CA.G,,,,GC...GAGG.G
5'-   GTTTTTTGTATAGAAACATCGTATTTTATCTCATTTTACTTTGTCTATTTATATCAGTTGTCATGAAAAGCTTTGAGGTG
           |         |         |         |         |         |         |         |
  904010   1904000   1903990   1903980   1903970   1903960   1903950   1903940   1
           |         |         |         |         |         |         |         |
3'-   CAAAAAACATATCTTTGTAGCATAAAATAGAGTAAAATGAAACAGATAAATATAGTCAACAGTACTTTTCGAAACTCCAC
Islands  C,,,,,,CA.A.C...G.AGCA.,,,,.AGAG.,,,,.G,,,CAGA.,,,.A.AG.CAACAG.AC....CG,,,C.CCAC

 
Islands  A..AGAACAA.AGCCAA.G..A.C.GC...A....CG.A..GC.G.A....,,,GA.G,,,.G,,,,CA.AC.CACG.,,
5'-   ATTAGAACAATAGCCAATGTTATCTGCTTTATTTTCGTATTGCTGTATTTTAAAGATGAAATGAAAACATACTCACGTAA
           |         |         |         |         |         |         |         |
  903930   1903920   1903910   1903900   1903890   1903880   1903870   1903860   1
           |         |         |         |         |         |         |         |
3'-   TAATCTTGTTATCGGTTACAATAGACGAAATAAAAGCATAACGACATAAAATTTCTACTTTACTTTTGTATGAGTGCATT
Islands  .AA.C..G..A.CGG..ACAA.AGACG,,,.,,,,GCA.AACGACA.,,,,...C.AC...AC....G.A.GAG.GCA..

 
Islands  ,GCG..AGCAA.CC.AAG.A...G....C....C..AG.CGG.A.C.G.GC....A.CA....ACAAGGACAGACA..GA
5'-   AGCGTTAGCAATCCTAAGTATTTGTTTTCTTTTCTTAGTCGGTATCTGTGCTTTTATCATTTTACAAGGACAGACATTGA
           |         |         |         |         |         |         |         |
  903850   1903840   1903830   1903820   1903810   1903800   1903790   1903780   1
           |         |         |         |         |         |         |         |
3'-   TCGCAATCGTTAGGATTCATAAACAAAAGAAAAGAATCAGCCATAGACACGAAAATAGTAAAATGTTCCTGTCTGTAACT
Islands  .CGCAA.CG..AGGA..CA.,,,C,,,,G,,,,GAA.CAGCCA.AGACACG,,,,.AG.,,,,.G..CC.G.C.G.AAC.

 
Islands  .G,,,CG.CACC.C......ACAGGC..GG,,,CGA.AGCGGGCA..C....AA.AA.CG...C...AAGCA...G.AC.
5'-   TGAAACGTCACCTCTTTTTTACAGGCTTGGAAACGATAGCGGGCATTCTTTTAATAATCGTTTCTTTAAGCATTTGTACT
           |         |         |         |         |         |         |         |
  903770   1903760   1903750   1903740   1903730   1903720   1903710   1903700   1
           |         |         |         |         |         |         |         |
3'-   ACTTTGCAGTGGAGAAAAAATGTCCGAACCTTTGCTATCGCCCGTAAGAAAATTATTAGCAAAGAAATTCGTAAACATGA
Islands  AC...GCAG.GGAG,,,,,,.G.CCGAACC...GC.A.CGCCCG.AAG,,,,..A..AGC,,,G,,,..CG.,,,CA.G,

 
Islands  ...A....GAGG,,,,...C,,,.CGG..,,,,CGAA.G.GA.C.CA..C...CC.C.GA.,,,GG.A.A.AGC...CAG
5'-   TTTATTTTGAGGAAAATTTCAAATCGGTTAAAACGAATGTGATCTCATTCTTTCCTCTGATAAAGGTATATAGCTTTCAG
           |         |         |         |         |         |         |         |
  903690   1903680   1903670   1903660   1903650   1903640   1903630   1903620   1
           |         |         |         |         |         |         |         |
3'-   AAATAAAACTCCTTTTAAAGTTTAGCCAATTTTGCTTACACTAGAGTAAGAAAGGAGACTATTTCCATATATCGAAAGTC
Islands  ,,,.,,,,C.CC....,,,G...AGCCAA....GC..ACAC.AGAG.AAG,,,GGAGAC.A...CCA.A.A.CG,,,G.C

 
Islands  A..GGCGAAGCG...CGACC..ACA.CA..C,,,,.G,,,.A....G.CGA...A.A.ACG.,,,.CCAG..CC,,,,.A
5'-   ATTGGCGAAGCGTTTCGACCTTACATCATTCAAAATGAAATATTTTGTCGATTTATATACGTAAATCCAGTTCCAAAATA
           |         |         |         |         |         |         |         |
  903610   1903600   1903590   1903580   1903570   1903560   1903550   1903540   1
           |         |         |         |         |         |         |         |
3'-   TAACCGCTTCGCAAAGCTGGAATGTAGTAAGTTTTACTTTATAAAACAGCTAAATATATGCATTTAGGTCAAGGTTTTAT
Islands  .AACCGC..CGC,,,GC.GGAA.G.AG.AAG....AC...A.,,,,CAGC.,,,.A.A.GCA...AGG.CAAGG....A.

 
Islands  AGG.A.AA.AA
5'-   AGGTATAATAA
           | 
  903530   1903520   
           | 
3'-   TCCATATTATT
Islands  .CCA.A..A..

IGR  -   1903519  1904249  ()  12  yncM

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 - 1903519 1904249 yncM [-]
1 Streptococcus mutans UA159 B/C NC_004350.1 + 216405 216788 SMU.228 SMU.229 [COG1302 COG1461]
2 Leptospira interrogans serovar lai str. 56601 chromosome I Sp NC_004342.1 + 4279896 4279939 LA4304 [-]
3 Listeria monocytogenes strain EGD B/C NC_003210.1 + 2826355 2826514 lmo2751 lmo2752 [COG1132 COG1132]
4 Bacillus halodurans B/C NC_002570.1 + 34409 34677 serS [COG0172]
5 Streptococcus pyogenes B/C NC_002737.1 - 1254902 1255284 murD murG divIB [COG0771 COG0707 COG1589]
6 Salmonella enterica subsp. enterica serovar Typhi P-g NC_003198.1 + 1024485 1024882 STY1038 [-]
7 Sulfolobus tokodaii A NC_003106.1 - 1320012 1320564 STS153 ST1311 [- -]
8 Thermoanaerobacter tengcongensis strain MB4T B/C NC_003869.1 - 966858 967015 PorA2 PorB [COG1014|COG0674 COG1013]
9 Oceanobacillus iheyensis B/C NC_004193.1 - 2860400 2860916 OB2782 [COG0753]
10 Bacillus subtilis B/C NC_000964.1 - 2017509 2017807 rtp [-]
11 Haemophilus influenzae Rd P-g NC_000907.1 - 862208 862341 HI0811 [COG0165]

________________________________________________________________________________
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
CCAAAATAATTTAGCTATTGCAAAATTAACGGAAAATGGCTAACCTGATTCCAACGATGGGTTATTACGCCTGTGACGTT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
10  AAATGAAAACCTGTCTTTCGACAGGTTTTTTTATTTGAATGAAATCCGTACCGGTAAAATGAGATATGTAAACCCTGGCA
11  --------------------------------------------------------------------------------

 
________________________________________________________________________________
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
ACAAGAATTAAGAACCTCGCCTCGGCGGGGTTTTCTTTTATGGATTCCCGACGCCAATAAGACAAAGTGCGGGGAGTGAT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
10  ATCGTTTAAATTGAAGATAGCAGTAAATGCAGGCTAT-------------------------------------------
11  --------------------------------------------------------------------------------

 
________________________________________________________________________________
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
GCGGAGTCTACATGTTCCAGCCGACCGCAAAGCTCACACGGGCAGGACCACAATCTGATACCGCGATAGCTTTTGCTGAT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

 
_ACGCCATTAACATCTCCTCGTTTTTACTTTCCCCCGGCTATTGCCGGGTCTTTTTTGTTTGTGCACTATATGTATATTT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------ACAATGCGTTGAGAGGAACTAGTAATAGGAATACTTCTGTTCAGAGAGCTAGTGGACGGTG
-----------------------------------------------------------------------AAATACTTA
CGCGCCGGAGCGGTAACCGGCAACAATTTAAGCCTCGGTGATTGCCGGGGCTTTTCTGTTTGTGCCGTCCGGAATAATCC
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
10  -AATAGAACTAAGAAAACTATGTACCAAATGTTCAGTCGAAATTTATTTTTTCCGCTACACCTATAATCAGTAAACATGA
11  --------------------------------------------------------------------------------

 
CTGAAGCTTCCCTTTCTATGAAAACCTTGGTGACTGAATCTGAAAAAGAATAGTGAATATTTAGTACATAGTTTAGTTAG
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
CGAACTAGCCAGAGGTGCCTATGAATCCATCCTTGAGTGGAATGCTGAACATAAGTAGGCGTTTCCGGTTCTGGCCGTTA
AATAAAAATACTTAAATAAAAATACTTAAAGATTGATGATTTTGGTTTTTATACGATAAAAGGACTGATTTGTTTTAGAC
CTCTGAGCTTTGTCGTTGATCCACCGGGCGGCCTTCCTACTTCACACTGCGCCATCCGAGCTATCGGAGGTGAGGCTT--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
10  AATAACTGGACTATCAGTCTTTAATATAAAGAAGGAAAACAATAAAAGAAAATTGAATATTTAGTACATAGTGTTGTCAG
11  --------------------------------------------------------------------------------

 
TT_CATAAGT__GAGCGCATTCAATTTATTGCAGTTACAAAGAAA_CTTTTAT___AAACTCTTTGAGGATCCTACATAA
--------------------------------------------------------------------------------
-------------------AGATTTACACAAAAACTACAAAGCAA-CTTTTAT---AAAATCTTCTT-------------
--------------------------------------------------------------------------------
TC-CAGATGA--GTGGTCAGCGGTATAGCTGGCAACAAGGGTGGC-AACGCGG---GTGCTCTCGTCCCTTTTCTTTAGG
AA-TATCAGT--CCTTTTTTAATAGTTCATTTTTTCTGAAAGAAAGCTTTTAGCCGATTTTCATTGAGTGTGCAAC-TAA
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
10  TGACAGAAGAAGGAGTGCATATG---------------------------------------------------------
11  --------------------------------------------------------------------------------

 
AAGGAGAGGTTTTTT_GT_ATAG___AAACATC______GTATTTTATCTCATTTTACTTTGTCTATTTATATCAGTTGT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
GATGAGAGCTTTTTT-GT-ATAT---AAACATT------G-ATTCGATACCAAAGGAGGCGTTTTAT-------------
AAAGAGATGCTTGGTAGTGACAGTTAAGACCTCTGACTAGTATTTTATCTTATTTTACTTAAAAAAACG-TATCAATAAT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

 
CATGAAAAGCTTTGAGGTGA__TTAGAACAATAGCCAATGTTATCTGCTT_TATTTTCGTATTGCTGTATTTTAAAGATG
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
C-TCACAAATATGGGCATGATGTTTGTATATTGGAAACGGAT-TCTAATTCTAAACTCA-AGAACGGTATTTTTAAAATG
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

 
AAATGAAAACATACTCACGTAAAGCGT____TAGCAATCCTA_AGTATTTGTTTTCTTTTCTTAGTCGGTATCTGTGCTT
----------------------------------------------------------------TCTAAACCTCCTACTT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
T--TGAAAAAGCATCTAAATAAAG-GTAAAATAGAAATCAAATAGAATGGATAGTGTGAGCTTAG---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

 
TTATCATTTTACAAGGACAGACATTGATGAAACGTCACCTCTTTTTT_ACAG__GCT_TGGAAACGATA___GCGGGCAT
TTATCATTTTACAAGAATTTAA---GGTAAAAGTCCAACTCTCTTTTGAAAGTAGCTGTATAAAATTTA---AATTGTA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------AA-AAGA--TTA-GCTAAAGTTTA---AATAGTGC
--------------------TTTCCCAATACTCCTCCCTTTGAAGTC-TTTT--TAT-ATTATACCACA---TATTAAGA
--ACGTAATAGTTATGATGAATTTTGTTGTAAGTTAATAATTGTTTT-AAAA--ACC-TATGTTCGCTACATGTGGGCAT
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

 
___TCTTTTA_ATAATCGTTTCTTTAAGCATTTGTACTTTT_ATTTTGAGGAAAATT_TCAAATCG_GTTAAAACGAATG
----CATTTACATCAA--TTTCATTATGCTTTAGTACCATT-AACGTTCGCTGATTA-GAATTTTT-GTTTTTTAATTTT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---CCCCTCC-CTCCCTGTCTATTTAAACATTTGCCTTTTTTATTTTGAGGAAAATG-GAACCATT-CTACTTCAAATCT
---AAGCTAT-CGCTGTTAAAATTAACAAAACTGTACTTTT-ATTTTAAAGAAAATTATGATATAA--TGAAAAAAAGTT
AGGTTTTTTA-AATTTCATTTCTTTTTTCTTCTGTAC-----AATACAAAGTAAATA-AAGACTATAGCTAGCAAAAATC
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

 
TGATCTCATTCTTTCCT___CTGATAAAGGTA__TATAGCTTTCAGATTGGCGAAGCGTTTCGACCTTACATCATTCAAA
TAACAGTCCACCTAATC---TGTTAAAATATT--TCTTGCTAAGTAAGTTGTAGGCAACCTATTTCAATGTGAAGAAAAC
--------------------------------------------------------------------------------
-------------------------------------------------------AACTATAGAAATTTCACAATTTAAA
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TACGAAAAAGTAGTAGG---TACAGCTCATAA--CGTCGACGAATTAGAAAAAGAAATAGCAAGAATTGGAGCAACAGAT
TCAACTAATAATTATTT---AAGGAGAGGTGA--AAA-------------------------------------------
CAATCGCATTGTTCCTTAGACTGTTAAATGTAATTCCATCTTTTAAAAATACGAAATCTATCAAATAAATGAGAGGAATG
10  --------------------------------------------------------------------------------
11  ---------------------------------------------------ATAGCACTAATACAAATAAAATGGACAAA

 
ATGAAATATTTTGTCGATTTATATACGTAAATCCAGTTCCAAAATAAGGTATAATAA_______________________
TGGTTTGACAATAGTGGGTTAATGACTTGTTAAGCAAGATAAACAAGCTATCTCTTGATATTTAGGAAAGATAATCTATA
--------------------------------------------------------------------------------
ATGAAATAATTTGTCGAATTCGCCATATTTTCGCCATATTTACAATTTGTGAAAATATTACTTGCAAATTTTCACAATCT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
CCAGCATGTGTTAATTGGCATTTGGAGCAGGGGCATATCGTTCAGTGGTTGAAATATATAGGGAATAATACTTTAGCTGA
--------------------------------------------------------------------------------
CTGATCAAGAAATATCCAAGGACAGCTAGAATGAAAAATGGTGCAAAGCGCATTGTTATCAATCTCCTTTTTACACTATC
10  --------------------------------------------------------------------------------
11  ATGAAAGATTTTGTCCATTTTTGTTTTATTATTAATATAGAATATTGCTTTATGAATAAATATGCACAATAATAGAATAA

 
________________________________________________________________________________
CACCTATATTTTTACAAGGTTTCTATATTATGGTAAAATAAACTGATAAAAACTTTTTGAGGTAGCAAA-----------
--------------------------------------------------------------------------------
ATATTAGAATATGTGTTCGCACGTTTTTATTTCCGTTTTCCAAGGGAGGAAAATC-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
AATGTTAGAGGGGGTTAAGGACTGGAAGGAAGCATTAGCAAGGATAAGGGATTACTACGCTATACAACAAAAAGCTGTTA
--------------------------------------------------------------------------------
CCCTTAATCAAATCGGTTAAAACAAATGTGGCTTTGGAATTTATACCTAAAGTTCTAAGCCATATCTGTAGGACATAAAT
10  --------------------------------------------------------------------------------
11  TTAATTAAAACAAAAAGGAAAAATT-------------------------------------------------------

 
________________________________________________________________________________
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
CATCTTCAAAAAGGAGGAGTAAGAGAAAATGATACCGCCTGAAGAAATTATAAAAATCTTTCTATTAATCCCAGCGATAA
--------------------------------------------------------------------------------
TGATAAGAGTTTATTTATTGTATACGAAATTATAAATATTGCAGCAGTTGATCTCATACGGTTACGTCCAGGACATACGG
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

 
________________________________________________________________________________
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TTTTATTGTTTTACAGTATAGTATATTTGATTCTTTATGAGTTAAAAGTACAGCCCGAACTCTGTAAATTTTATAGAAAC
--------------------------------------------------------------------------------
TGGTAAACGGACGTTTGCGCTTTGATCTTGGTGTGATAGGAGGTTTGACC------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

 
________________________________________________________
--------------------------------------------------------
--------------------------------------------------------
--------------------------------------------------------
--------------------------------------------------------
--------------------------------------------------------
--------------------------------------------------------
TTTTCGATAATTTTAGCAATATTCGGTGCAATATTTATATCTCTTTATATGGTGAT
--------------------------------------------------------
--------------------------------------------------------
10  --------------------------------------------------------
11  --------------------------------------------------------