BLISSBreaker Lab Intergenic Sequence ServerHome


Intergenic view options: Interleaved


NC_000964.1 Bacillus subtilis (- 185002 to 185191) circular

Term (99.90)%  ---------------------------------------------------CCCTTACTTTTACACATAAGTAAGGG---
Islands  AACA.AAGCA.CG.A.G..ACACG.G.AACA.A..C..A..GAACG,,,GACCC..AC....ACACA.AAG.AAGGG...
5'-   AACATAAGCATCGTATGTTACACGTGTAACATATTCTTATTGAACGAAAGACCCTTACTTTTACACATAAGTAAGGGTTT
   |         |         |         |         |         |         |         |        
   185190    185180    185170    185160    185150    185140    185130    185120   
   |         |         |         |         |         |         |         |        
3'-   TTGTATTCGTAGCATACAATGTGCACATTGTATAAGAATAACTTGCTTTCTGGGAATGAAAATGTGTATTCATTCCCAAA
Islands  ..G.A..CG.AGCA.ACAA.G.GCACA..G.A.AAGAA.AAC..GC...C.GGGAA.G,,,,.G.G.A..CA..CCC,,,
Term (77.76)%  ---------------------------------------------------GGGAATGAAAATGTGTATTCATTCCC---

 
Islands  ....CA.GC.,,,,,CCCACCCGC...A.A.AGG,,,,C...CA...A...GG.ACAA.....A..G,,,,.GA..A.CA
5'-   TTTTCATGCTAAAAACCCACCCGCTTTATATAGGAAAACTTTCATTTATTTGGTACAATTTTTATTGAAAATGATTATCA
   |         |         |         |         |         |         |         |        
   185110    185100    185090    185080    185070    185060    185050    185040   
   |         |         |         |         |         |         |         |        
3'-   AAAAGTACGATTTTTGGGTGGGCGAAATATATCCTTTTGAAAGTAAATAAACCATGTTAAAAATAACTTTTACTAATAGT
Islands  ,,,,G.ACGA.....GGG.GGGCG,,,.A.A.CC....G,,,G.,,,.,,,CCA.G..,,,,,.AAC....AC.AA.AG.

 
Islands  A..G,,,GC..C.G,,,,GG.GG.C.AC.C
5'-   ATTGAAAGCTTCTGAAAAGGTGGTCTACTC
   |         |         |        
   185030    185020    185010    
   |         |         |        
3'-   TAACTTTCGAAGACTTTTCCACCAGATGAG
Islands  .AAC...CGAAGAC....CCACCAGA.GAG

IGR  -   185002  185191  ()  16  ybbB

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 - 185002 185191 ybbB [COG2207|COG0614]
1 Oceanobacillus iheyensis B/C NC_004193.1 + 999940 1000557 dhbA dhbC dhbE dhbB dhbF OB0959 OB0960 OB0961 [COG1028 COG1169 COG1021 COG1535|COG3433 COG1020|COG3319 COG3251 COG0477 COG2091]
2 Oceanobacillus iheyensis B/C NC_004193.1 - 745722 746252 OB0704 [COG1292]
3 Clostridium perfringens B/C NC_003366.1 + 895940 896375 CPE0721 [COG0428]
4 Salmonella enterica subsp. enterica serovar Typhi P-g NC_003198.1 + 3678892 3680220 STY3819 STY3820 [COG3090 COG1593]
5 Shigella flexneri 2a str. 301 P-g NC_004337.1 - 4114174 4114451 rhaT [-]
6 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 - 778406 778528 CAC0669 [-]
7 Salmonella typhimurium LT2 P-g NC_003197.1 - 1964358 1965082 mig-3 [COG2110]
8 Salmonella typhimurium LT2 P-g NC_003197.1 - 4266211 4266538 STM4054 STM4052 STM4052 [COG1638 COG3090 COG1593]
9 Salmonella typhimurium LT2 P-g NC_003197.1 + 2524961 2525302 nupC [COG1972]
10 Clostridium perfringens B/C NC_003366.1 - 290910 291055 CPE0219 [COG2207]
11 Bacillus halodurans B/C NC_002570.1 - 4017933 4018101 BH3889 [COG1090]
12 Shewanella oneidensis MR-1 P-g NC_004347.1 - 4719119 4719234 irgA [COG4771]
13 Synechocystis sp. PCC 6803 Cya NC_000911.1 - 33545 33890 exbB sll1405 [COG0811 COG0848]
14 Bacillus subtilis B/C NC_000964.1 - 3910100 3910272 ywcH [COG2141]
15 Escherichia coli K12 P-g NC_000913.1 - 4098107 4098390 rhaT [-]

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ATAGAAAATATACGTAGAGCATTCTCATTTTGATGAGGGTGCTTTTTTGATAGTTAAGAAGCATTTGTAGGAAGAAATTT
GCAAACCTCCTATTTACTATTTTTATGATCTTCAGATAAGCATCTGTATCTAGCATAACGGAAAAATAAAATATATGGAA
ATAATAAAAGAAGGAATTTTATCAAGACTTTATTATAAAGTAGATATATCAAAATAAAATCTAATAAAACTTACAAACAT
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10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  GGAATTCTTGCATTGACAGGCAATTATTGTGGCCCCTAGCCTAGGCTGAACTGCATCTATTATGTGAAATATTATTATTA
14  AGCAAACCTCTCCGT-----------------------------------------------------------------
15  --------------------------------------------------------------------------------

 
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TACACCTAAATTAGTAGAACACACTCGTGATGGTTCTTAACAGACGCTTGTGCTTTTTCTCAAATTAGCAGATGGCTAAA
CGTTTTAACATGTGATAATTTTCTAATTTATAACTAGGTATCCCGTTTTTACTATGAGAACCCAAATACTT---------
ATTCGGAGAATTACTAGATTTCGCTAAGAATTTATAATTATTACTTCGAAGATATTACTAAAGCTTCGAAACTTGCTACG
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10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  ATAGCTATAGCATTA-----------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------

 
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GGATTATTTTATCGAATCTATACAAAAAATGTAGGAATTTAGAAGGAAACGAAAATAGCATGGAAAAAATTATCTTTATT
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CTTCGAACAGTCTCAGCTTTTTAACGTAATATCTTCTACGTAATAATTTAAATTCTAAAGCTCATCTAGATATTCTCTTC
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10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------

 
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TCCATGCTGATTTTTTAGTTATTAGGTGAAAATCGCACTATATCAACACTTAAACTGTATAGTTGGTTCTCATTTCCTTA
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ATATTGTTTGTAAGTTT---------------------------------------------------------------
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10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------

 
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AATTAAACTCAATGATAATTATTTTGGATGGTAATAACTGTATTTTAGAGATAAGTAACTGTTATAGACCGGTATATCAA
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10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------

 
_______________________________________AACATAAGCATCGTATGTTACACGTGTAACATATTCTTATT
CCTTCAGGAAGTTATGATGAGCATAATATATTGTATGTATCCTAAATAATATAGGCTTTTTTACCTTGTTGACGGATAGG
---------------------------------------CCACTTCCATTGATATTAATACAAAATAAAAATAATTTGAC
---------------------------------------TATTATTAACTTTTGATAGAAGGCATTATTTTAAGTTACTT
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10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  ---------------------------------------TAGACGTTTAGTTGCGACATTAAACACCTCCACTGACTCTT
14  ---------------------------------------CTGGAGGGGTTTTTATGTTTCACGTGTAACATATTCC----
15  --------------------------------------------------------------------------------

 
GAACGAAAGACCCTTACTTTTACACATAAGTAAGGGTTTTTTTCATGCTAAAAACCCACCCGCTTTATATAGGAAAACTT
TTCATGTATTCTAAAGTATTCAGTATATGATAATGATAATCATTATCATTTAAATTACCAATTGATACCAACTAAAGCTC
TCATAAAAATCGGAATTTGTATCAAAACTAACAAAAAAAGAAAATGGCTATAAAAAATCCGCTTCTATTTAATCTCTAAT
GATATAATTCCTTCTTTTTATTTTTTTGCATATAGTATCTTAAATAAGGTTTTATAGGAGAGAGGAATTAAATAAGTGGA
-------------------------AATCATCTCCATTATTGTCGAGCGGCACAGTGTTAACGCCGCGTAAGCAGTTGGT
-------------------------------CTCCAGTATTGTCGGGCGGCCGATTGTTAATGCCGCGTAAGCAGTTGGT
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-------------------------AATCATCTCCATTATTGTCGAGCGGCACAGTGTTAACGCCGCGTAAGCAGTTGGT
--------------------------------------------------------CTTTTGCCTCAAAAACATAGCCTT
10  ------------------------------------------------------------------------AGTTAATC
11  ---------------------------------------------------TGTTTGTACTCCTTTATAAATGAAAATGA
12  -----------------------------TCTTAAGCAACTCTTACAAGTGATTACTCAAAGTCTAACTTGAGCTGATTG
13  TTATTCCAAAATTTTTTCTCTGCAACCGTGAATATAGGCCCTTAAAGCCTAGAAAACTCGTTTGCACTTAAGCAAATCTT
14  GACAAATAGGGACATGCTTTCACAAATAAATGGCGAATGATAGGGGACACTGATAAGCAGTGTGAGCGGCTTTGGAGAAA
15  -------------------------ATTCATCTCCAGTATTGTCGGGCGGCCGATTGTTAATGCCGCGTAAGCAGTTGGT

 
TCATT_TATTTGGT__ACAATT__TTTA_TTGAAAATGATT__ATCAATT_GAAAG_CTTCTGAAAAGGT_GGTCTACTC
GTCTT-TATTTTTT--TATATC--TC-A-TTGAGAATGATT--ATCAATT-GAAGG-AGGTATGGTGAA-----------
GTAAG-CCTAATCA--ATAATT--TTTC-TTGAAAAT-ATT--AGCAAAT-TAAAG-CTTTTAAAAGAAA-TATTAGGAA
CAAAT-GCAGAGTT--ATAGTT--TATAATTGAAAATAATT--ATCAATT-GATTA-CGGAGTAAGT-------------
TCATTATAGTTAAT--TAAATG--AT-A-TTGAAAATGATT--ATCAATG-CCGTA-CTTTTTCCAGGGT-TATAAACGT
TCATTATAGTTAAT--TAAATG--AT-A-TTGAAAATGATT--ATCAATG-CCGTA-CTTTTCGTAAGGG-TATGGTTTT
------------TA--AAGTTT--TTTAGTTGAAAATAATT--ATCAATA-GATTT-ATAATGCAGCTAT-AGGGATTTT
-TTAT-GTTCTCTG--TGTGTT--GTTA-TTGAAAATGATA--ATCAATA-TCGCA-AAATGAAATAAAT-AATCATTAA
TCATTATAGTTAAT--TAAATG--AT-A-TTGAAAATGATT--ATCAATG-CCGTA-CTTTTTCCAGGGT-TATAAACGT
TGCTA-TGTTTCAT--GCTATG--TTTA-TTGATAATGATT--ATCAAGT-GCATT-TCAATGGGTACGG-GTGATTACT
10  CCCCT-TTTGACTT--TCTTTT--CCTA-TTGAAAATGATT--ATCAATA-ATGTT-AACATACTTATAT-TATCATAGA
11  TTATC-AATATCGTTCACAATC--TTTA-CTATAAAAAAACGGATGAA---GAAAGTCAACATAAAAGTTTGGTTTAACT
12  TAACA-TAGGGATA--CATTCC--GGTA-TTGAAAATTATT--ATCATTTAGAAAG-CTGTTAAGGGAGA-CTCG-----
13  --ATT-GCTTA--T--CCATTTAATTTA-TTGAAAATAGTT--ATCAATT-GCTAT-TATGGCTAGGCAA-GGGGATTAA
14  AAATA-GGGGATCA--GTGATA--CGAT-GAGGATGAGGTG--GTAGGG-------------------------------
15  TCATTATAGTTAAT--TAAATG--AT-A-TTGAAAATGATT--ATCAATG-CCGTA-CTTTTCGTAAGGG-TATGGTTTT

 
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ATACCCATATATATTCCGACAAATAATGACATTTTTCGATTCAGCTGTAATTACCCTTATTTTTGCCATTTGTTAAAAAA
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TACGGCATCCGCTGAAAAAAACCGATTTTTACGCCTCCAACCGAAACCGCCTGTTGATGAATTCCTGGAAATCATGAAAT
GCAGGAAAATGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCAACAGG
TAGTCAAAACATCGTAATTTGAATTTTTTCCTATAACAATTTATTTAAAAGGTGTGATTAATTT----------------
GTGGTAGTTGTTGATAATTGTTCGCATTTTAAAAAGGTACTCCCGGCGGGGCGGCCTGCCACGGGGCGGCAGCGGCGCGG
TACGGCATCCGCTGAAAAAAACCGTTTTTTACGCCTCCAACCGAAACCGCCTGTTGATGAATTCCTGGAAATCATGAAAT
TTGATAGTGTGAAACGATAGACCGATACGATGACGACCTGTATCAGAACAGTTTGGCTTAACATTACAAGATTAGCACAC
10  TTTTTATAATTGTTTTTCTCTATATTAAGATTTTTTTTAATATATTAAGTTTAAAAAGGAGGATTTTGT-----------
11  GTCGGAAAAAGTGGATTCATTTGCTAAGCTAGAGGTAAGAACTATTTGCCAAGAATTGAGGGATTAG-------------
12  --------------------------------------------------------------------------------
13  TTGAGAATTACTCTTAACTGTGTTGAGTGAACACAAGAGGTTATCACGTTGGTAGAAGTTTTT-----------------
14  --------------------------------------------------------------------------------
15  GCAGGAAAATGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCAACAGG

 
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TTTGCTTTTTGGTATCGTAAATAATGTTTTGTAATTTAGTGAAGCACAAATCAGTGGATGATGTGTGTCGAGTAAAAGAA
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GTGAAACAGGGTTTCAAAATCTTTCTTTTGGTGCCAATTTTTATCAGCGGTGGCAAAATCAAGAAGGTTATAATTTCACC
CGAAAGGTTAATCGACAGCACGATTTTTACACTCATCTCGTCGGAGATGTGAAGCGACGAAAAATGATGAGGATAAGAAG
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GATTTGGCGCATTTTTGATTTTTCATGCATCATCATCATGTTGTAACTCTCTGTTTTAATGTAATTTATTTTTAAAAGAT
GTGAAACAGGGTTTCAAAATCTTTCTTTTGGTGCCAAATTTTGTCAGCGGTGGCAAAATCAAGAAGGTTATAATTTCACA
TGATATAACTTTTCATTTTCATATTCAGTACAGTAAAAGTGTATTACAGATCACTAATTTTGAATCTCGTCACAGGTCCT
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  CGAAAGGTTAATCGACAGCACGATTTTTACACTCATCTCGTCGGAGATGTGACGCGACGAAAAATGATGAGGATAAGAAG

 
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AAATAATGAAACCATAGAAACGAGGTAAATG-------------------------------------------------
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ATGCAATTACATTCCCGGTAAATTATTACAATTGCGAGGGAATTATGAAGCAACCTGGTTTTATACGTCTGGCTACGTTG
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GATGGTTTGTATGTTTTTTGTTCATTATATTTTGTTTTTCCGGGGGAGGGCGCGCTAAGAAACAGCCCCAGAGGTAAAAA
CTGCAATTACATTCCCGGTAAATTATTACAATTGCGAGGGAATC------------------------------------
TATTATAGTGTGTGTTGGATCTCGTTTTCTTTACGGCTGTTGCATAGAATGTGCACGAAAATTAAACCTGCCTCATATTT
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------

 
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GCCTTACTCTCCACACTCTCTTTCTTCTCCCACGGCGAAACCATTTTGCGCCTGGCCTACGCTGAAAATAGCCAGCCGGT
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TGGACGGCGAACTGAAGAACCTCAAATGCAATATCAGTCAGCTTGCCGCTATTACAGGGTTACATCGACAGACGGTTGTC
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GGAGCAAAT-----------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------

 
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AAAAGATGCGTTGCACTTCCTGGGGCAGCAAGTTGAAGAGAAAACGGGCGGCGATATCAAAGTACAGTACTTCCCGGACG
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AGTCGCCTCTCGGGCGTTCCCCTGGCACTGGGAAGCAATGAAAAAAACAAGCTGTATCTCCTGACGGATGTGATCCGCGT
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10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------

 
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GACAGCTTGGCGGCGAGCGCGAACTGGTGGAGTTGACGCAGGTCGGCGTCGTCGACATCACTAAAGTGTCGTCCGGGCTG
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ACTGATGGAAACGCCCGTTTCCCAGGCTGCTGAACATCAGGACCCGAATAAAATGACTCCAAAAGAGCGTAAGAACTGGT
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10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------

 
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ATGGAGAGTTTTTCGCCTGAGTACGGCGTGTTCTCACTTCCCTACCTGTTTGCCACCGTCGATGAATACTACCGCGTAAT
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TTGACTCCGAAAAGGGGCGTTAATACCACGGGCAATCATACTAACCAGTTCGGCGGTTATATCAATTCATACTGGGGAGA
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10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------

 
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GGATAACCCACAGGTGAGGAGCCTGTTTATCAGTCCACCGCCGCACAGGGTTTTGTCGGCGTAGGCTGGTATGATTCCGG
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TTCCAATCACACTTCATTTCAGCTAGGAGGTGGTGCGTGGACACAGGCCGCTGGCGACCATGCGCATACAGTTTATATCG
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10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------

 
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CGCGCGTAATTTTTATATGAGCAAAGCGCCGGTTAAACGCATTGAGGATTTACGCGGGAAGAAGATCCGCGTCATGCAGA
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GAGGACACGAGCACACC---------------------------------------------------------------
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10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------

 
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GTGAGACGGCGATCCAAACTCTCAAACTGCTGGGCGCTTCGCCCATCGCCATGAGCCAGGCGGAGGTCTATACCTCGTTA
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10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------

 
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CAACAAGGCATTCTCGACGGCGCGGAAAACAATGAGTTCGCTCTCACCATCGCCCGCCACGGCGAAGTCGCCCGTTATTA
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10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------

 
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CACCTACGATATGCACACCCGCATTCCCGATATCCTGCTAATGAGTACCCTCACGCTGGAAAAGCTGACGCCGGAACAGC
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10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------

 
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AGCGCATCGTCGAAGCCGCCATCAAGGCGTCGATCGAATTTGAGAAAGCCGCATGGGACAAGGAAATAGAGAAAACCAGG
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10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------

 
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CTGGCGGCGGTAAAAGATTTCAACGTTGAATTCTACGAGATCGACAAAAAACCCTTCCAGAAGGCAGTACAGCCTATTTA
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10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------

 
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CGACGGTCTGAAAAACAAACCGCGGCTTTACGGGCTGTATCAACGTATCCAGACAGCAAAAAATTAATCTAATCAGGAAA
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10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------

 
_____
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TTAAG
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10  -----
11  -----
12  -----
13  -----
14  -----
15  -----