BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (+ 1480822 to 1480950) circular

Term (98.78)%  -------------------------------------------CAAGCGAACGTTAAAACTGGTCGTTCGCTTG------
Islands  AGA.G..A.CGAG,,,,,,,.GA.A.C.GAA.,,,C.GC,,,,CAAGCGAACG..,,,,C.GG.CG..CGC..G....A.
5'-   AGATGTTATCGAGAAAAAAATGATATCTGAATAAACTGCAAAACAAGCGAACGTTAAAACTGGTCGTTCGCTTGTTTTAT
          |         |         |         |         |         |         |         | 
          1480830   1480840   1480850   1480860   1480870   1480880   1480890   14
          |         |         |         |         |         |         |         | 
3'-   TCTACAATAGCTCTTTTTTTACTATAGACTTATTTGACGTTTTGTTCGCTTGCAATTTTGACCAGCAAGCGAACAAAATA
Islands  .C.ACAA.AGC.C.......AC.A.AGAC..A...GACG....G..CGC..GCAA....GACCAGCAAGCGAAC,,,,.,
Term (73.78)%  -------------------------------------------GTTCGCTTGCAATTTTGACCAGCAAGCGAAC------

  
Islands  ...C.A...,,,...A.GA.A.AA.....,,,GA..AAGGAG.GA..CA
5'-   TTTCTATTTAAATTTATGATATAATTTTTAAAGATTAAGGAGTGATTCA
          |         |         |         |         |
  80900   1480910   1480920   1480930   1480940   1480950   
          |         |         |         |         |
3'-   AAAGATAAATTTAAATACTATATTAAAAATTTCTAATTCCTCACTAAGT
Islands  ,,,GA.,,,...,,,.AC.A.A..,,,,,...C.AA..CC.CAC.AAG.

IGR  +  1480822  1480950  ()  19  ykuH

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 + 1480822 1480950 ykuH [-]
1 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 - 1992440 1992616 CAC1838 [COG0621]
2 Yersinia pestis strain CO92 P-g NC_003143.1 - 2920040 2920231 lipA [COG0320]
3 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 + 738245 738861 CAC0634 [COG4720]
4 Clostridium perfringens B/C NC_003366.1 + 19034 19275 CPE0012 CPE0013 [COG0579 COG3862]
5 Clostridium tetani E88 B/C NC_004557.1 + 1889006 1889231 CTC01776 CTC01777 [- -]
6 Clostridium tetani E88 B/C NC_004557.1 + 191493 191656 CTC00225 CTC00226 [COG4123 COG0313]
7 Streptococcus agalactiae B/C NC_004116.1 - 1211535 1211656 apt [COG0503]
8 Lactococcus lactis subsp. lactis B/C NC_002662.1 - 1706530 1706744 ftsK yraD yraC [COG1674 - COG1466]
9 Sulfolobus solfataricus A NC_002754.1 + 187527 187601 SSO0218 [COG1259]
10 Clostridium perfringens B/C NC_003366.1 - 1707376 1707672 CPE1448 CPE1447 CPE1446 [- COG0457 -]
11 Clostridium perfringens B/C NC_003366.1 - 1719910 1720200 furR [COG0735]
12 Methanococcus jannaschii A NC_000909.1 + 983104 983160 MJ1047 [COG0049]
13 Escherichia coli K12 P-g NC_000913.1 - 3791326 3791613 htrL [-]
14 Aquifex aeolicus Aq NC_000918.1 - 110567 110615 atpB aq_178 atpE [COG0356 - COG0636]
15 Campylobacter jejuni P-e NC_002163.1 + 364183 364325 gatC [COG0721]
16 Campylobacter jejuni P-e NC_002163.1 + 846260 846414 Cj0908 [-]
17 Lactococcus lactis subsp. lactis B/C NC_002662.1 + 2300885 2301069 yxaB [-]
18 Staphylococcus aureus subsp. aureus N315 B/C NC_002745.1 - 1069658 1070021 pdf1 [COG0242]

0  ________________________________________________________________________________
1  ATAAAAAACCCCC-------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  TATTAGTACCTCCATTATCAAGTCTCATTATAGCATATTTTGTATAAATAATTAAAGAAAATTTAACATGAATTTGAGAA
4  ATTAATTATTAGTTCTTAAAAAATAACTAAGGACTAGTTAAAAATTTTATATTGTGATTTATATAAAATAAATTTGAGTA
5  CCCTTTCTAGTTATTAAATTAGTTTTCTTAATTATAACACATTAAATAAAAATTTTG-----------------------
6  TACAGTTCTCCTAATATCAATT----------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  AATATACTTATAAAAATTCAGCGGTTTAAATAATAGGAATTTTTACTTTAAATTTTGATTAGATAGTATGT---------
12  --------------------------------------------------------------------------------
13  AACTGTAACCTTCGAATTATGGAGTCAGAGACAATCTCAGACACGAATGTCTGTAATCATACCATCACATCCGAATCCCT
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  TGTTTTTCC-----------------------------------------------------------------------
17  GTGTTTCTCCAATCTAATAACCCTA-------------------------------------------------------
18  TACTTGTACCTCCACTTGCTATTTAAA-----------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  ATTATATTGTAATAAAATTAATATTTTTATAAAAAGAACTACTTAAA---------------------------------
4  TTTTAAGTGGATTTTTTT--------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  TCAGCCCTTTACATAGAGGTGCAAGGATGCTAATTGCAACAAACTAGTTTGGGTTTTAGCTAGTCCTTCATGGCGGATGT
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------

  
0  ________AGATGTTATCGAGAAAAAAATGATATCTGAATAAACTGCAAAACAAGCGAACG__TTAAAACTGGTCGTTCG
1  --------TTTAGTTTATTTCAGTATTATTATTTTCATTTTTATGATTAATTATTCAAAAA--CTTAAATTAAATTTTAT
2  ---------------------ATGACTCATATGCCCGATGTAACTGAAACCGTGAACGCCA--CCATCGCGCCAAAAGTG
3  --------ATTAAGAATGTTTTATGTGAAAAAGTTGAGTGTAATTTTAAGTAGTTTTTATG--TTACTCTATATATTATA
4  --------AATTTTAATTTATTAAGATTTTATAGAAATTTACTTGAATACTCTTTTTTTAT--ATTGCTATAATTTTAGG
5  --------CGAAGCAAAACTTTTATTTAATGAACAAGGAATAATGAATAATGAACAATTTA--GGTGGATTTTCTTCCGC
6  --------ATTCTTTATTTAATTATACACAAAAGTACCCTACGGGATAGACTTTTTTTAGA--GTGTCTATTCTATAGGG
7  ------------------------------TTTTTAAAACCATATGCAAAACTAGCATATGGTTTTAAAGT-----TTCC
8  --------------------------CGTTCCGTCTAAATCGAAGAAGGCTAAAGCCTTAT--AATCATTGATATTTTCC
9  --------------------------------------------------------CTATT--TGTTACCTCTTAATGGT
10  ------------------CTTATAAAAAAGCAGCTTAAGGCTGCTTTTTTTGTATATATAT--AGAAATTTTTTTATTAT
11  --------GGATGATTTCTACTAAAAAATGAAATT---ATAAAAAGGATAT--ATTATAGT--TGCAAATATGCAATTTT
12  --------------------------------------------------------------------------------
13  TGGTTTTGCATGTGAATAGTGCTTTAGTATCAATATTCCGATGTATGATAAATAACGGAAG--CATTTGAATGGATAATA
14  --------------------------------------------------------------------------------
15  ----------AATTTATCCTTGAAAAAATATTTTTATTTTTGTATAGAAAAATTATAGTAT--TGTATCATATAAATTGC
16  --------TTAGGTATTTCAAATTTTTTAAGTCAAAAATGTTTGTGATTATAATATTTTTT--TTCTTAAAAAATATTAA
17  --------TTCTACCAAAAACTTTTTAAAGCTGCTTGTTCCTTTGATTAAGATACTTTATC--AAGAACATTTAAATCCT
18  --------TTAAATGATAAATAAAATCTGCTTGGAAATCAATTTTAAACAATTACATTACA--CATCTTCATTACTAAGT

  
0  CTTGTTTTATTTTCTATTTAAA____TTT_ATGATATAATTTTTA_AA_GATTA___AGGAGTGATTCA___________
1  ATATTTTGATTTTATTGATAAA----TGT-ATGATATAATATTTA-AC-TGACA---TTTTATAATTACAAATAATATAC
2  AATGGCTGAACGAAACAGAGTA----AAG-ATGATATAATTTTTA-AA-CAATT---TTCAAATAATTTTTAACGAACGC
3  AATATTTTATTTTCTATTTAAA----AGC-TTCTCATTCTTTTTA-CT-AATAT---ATCACCAATGAAAACAAAGGTAG
4  AATGATTACAATAGTATATATA----TTTTATGATATAATTTTTA-GT-GGAAT---ATATCTAAGAGCTAGGGGTGAAA
5  TTTGCTAGAGAAAATCTTTAAT----TTT-ATAAAATAATTTTTA-AAAGAATA---AATATAGCATATTTAGTAAATAA
6  TACATTTTATTTTTTATTTAAA----TTT---GACTTTGTGTATA-AA-CTAGT---TAATAATAATTAATAAAGATTTA
7  A--GTACTATTTT--ATTTAAT----TTT-ATGATATAATGAAGA-GT-AAAAC---ATTTTAGGGGTTTCCCCTTAGAA
8  ATAATTTTATTGTATC---AAA----TTT-ATGATATAATTGTAA-GT-GGAAT---TATCTATTCTTTTATAAAGAATT
9  ATCTATGATTTGGATATTTAAA----TTT-ATGATACATAAGTAT-AT-GTAGT---GTATAC-----------------
10  GTAGAGAAATTTTCAATTATAA----TAT-ATAATAT---TTTTA-AA-GAATA---AGTATATATATTAAAAAATTAAA
11  AATATATCCTTTTGTATTTCAA----TTT-ATAAT-TAATTTTTA-AA-TCATA---AGTAAGACTAGATCAGTTTAATA
12  ------ATTCTCTATATTTAAA----TTT-ATTAAA-AATTTTGA-AA-GAGTT---GGAAATGAGGTGGTAAT------
13  TACAGTATACATTCTATTAATA----TTT-ATGATATAATTCTTT-TT-TTATA---TTA--------------------
14  ------------------CAAA----TTT-ATGTTATAATTTTCT-GA-GCCAA---TTGCAAAAGAGGTAAGGGAA---
15  AAAATATCCTAAACAATTTAAAGCTTTTT-ATGATATAATTTTCA-AA-ATTTT---AACTTTTTTATTAAGGTTTAAGA
16  TTATATTAACAATGCAGCCTTA----TTT-ATGATATAATTTTTA-CA-AATCATAAAGGCTTGTTTTAAAAGGTTGTCT
17  ATTCTATTTTTTACAACCCCAA----TTT-ATGATATAATTCTTATAA-GATTA---ATGCTTCACAAGAGTTTTTGAGG
18  ATATCTGTTGACAGTTACGTCA----TTT-ATAATATAATTTTTA-AA-G-TCA---AGATGATAAATAAATTTCTAAAG

  
0  ________________________________________________________________________________
1  GTAAGCTTAAATCAGGAGGAAATT--------------------------------------------------------
2  TACATTACGTTGAATTTAATGAAAAATCTCAAGTTGAGAGATTCAGAACTGGAACCTGCCCGATT---------------
3  ATATGATTACAAAGAAGTATATTCCTTCAAGAATAGAGTTGAATATAAAAGCGGACATAAGTATTAGAATAATCAATCCA
4  CAT-----------------------------------------------------------------------------
5  TATTTTCAAATAAAGGAGGGAAACTCGT----------------------------------------------------
6  ACAA----------------------------------------------------------------------------
7  AGACAAGTGAA---------------------------------------------------------------------
8  TAAATGACTGACAGAACTGTCAGTTTGTGTTAACTATAAAAATAAATAAATATAATTAATATTATTTTACTGACAAACCT
9  --------------------------------------------------------------------------------
10  GATATAAGTTATTAAAATTAAAGTATATGATTAAAAAATGTTAAAAAATGCACAAACATATAGATTTTTTTACAAAAATA
11  CTCCAATTTAGAAATATATTTTATACAAGTTTTTTTATGTGATATAATTTATATTAATGATTTAAATATTTGTTTAGGAG
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  A-------------------------------------------------------------------------------
16  ATA-----------------------------------------------------------------------------
17  CAACTTATTGGAGGTTAAA-------------------------------------------------------------
18  TATCATTGCTTGGAACCAACACTTTAATCATTTTTTAAGCAATTAGCATATCTGAAAATTTACATATACTATCTAAAATA

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  CATAGCCATTTAAAAAAGTGCATATAAATCGTCCTCCAATCTAAAGTGTAAAGATTATGTGCAATAAGTTACTATATATA
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  GTCAATATTATTAAAA----------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  CTGAATAATTGACATTAAAACCTAAATTTATGATATAATTTAATTGGTTATGGATGTTAAAATAATAACAGTAAGAGGAT
11  ATTGTT--------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  AACATTGGCAGTAGTTGGTTAACTTTGTAGATATTTACACATAAAAATGTATGAGTATCTTAACAACCTTTTTACTGTCA

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  CAAAAAAACGAAGACTATTATTCATATAGAGTTTTGATTGAAAATGAAGTTATTATATATTATTAGATTTTAAAAATAAA
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  GATTTAAGCT----------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  TTCAACTAAAACAAATTAAAATAAGGAAGGTGCAATAT------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  ATTATTCTAATAGTGTATGGATACATTTGCATAAAGCATATTATGAGATATAATTTTATTTAATAAGGTCTTATTTACAT
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------

  
0  ______________________________
1  ------------------------------
2  ------------------------------
3  AGTATTTAATATAATTTTAGGAGGATTTAT
4  ------------------------------
5  ------------------------------
6  ------------------------------
7  ------------------------------
8  ------------------------------
9  ------------------------------
10  ------------------------------
11  ------------------------------
12  ------------------------------
13  ------------------------------
14  ------------------------------
15  ------------------------------
16  ------------------------------
17  ------------------------------
18  ------------------------------