BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (+ 1302788 to 1302891) circular

Islands  CAA.A.AA.A.,,,GAA.A...,,,,.AA...G.,,,.,,,,.G.G...G.AGGGG...CGC..GGAGAG.GCCC,,,,,
5'-   CAATATAATATAAAGAATATTTAAAATAATTTGTAAATAAAATGTGTTTGTAGGGGTTTCGCTTGGAGAGTGCCCAAAAA
    |         |         |         |         |         |         |         |       
    1302790   1302800   1302810   1302820   1302830   1302840   1302850   1302860 
    |         |         |         |         |         |         |         |       
3'-   GTTATATTATATTTCTTATAAATTTTATTAAACATTTATTTTACACAAACATCCCCAAAGCGAACCTCTCACGGGTTTTT
Islands  G..A.A..A.A...C..A.,,,....A..,,,CA...A....ACAC,,,CA.CCCC,,,GCGAACC.C.CACGGG.....

  
Islands  ,C.G,,,,GGAAGGAGGCAC..GC
5'-   ACTGAAAAGGAAGGAGGCACTTGC
    |         |         | 
    1302870   1302880   1302890   
    |         |         | 
3'-   TGACTTTTCCTTCCTCCGTGAACG
Islands  .GAC....CC..CC.CCG.GAACG

IGR  +  1302788  1302891  ()  14  yjmC yjmD yjmE yjmF

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 + 1302788 1302891 yjmC yjmD yjmE yjmF [COG2055 COG1063 COG1312 COG1028]
1 Clostridium tetani E88 B/C NC_004557.1 + 2316524 2316633 CTC02192 [COG1114]
2 Thermoanaerobacter tengcongensis strain MB4T B/C NC_003869.1 + 851115 851265 TTE0842 [-]
3 Lactobacillus plantarum WCFS1 B/C NC_004567.1 - 3101450 3101775 galR2 [COG1609]
4 Methanococcus jannaschii A NC_000909.1 + 247080 247240 MJ0262 [COG0532|COG1372]
5 Clostridium tetani E88 B/C NC_004557.1 + 721241 721334 CTC00697 cutA [- COG3323]
6 Lactococcus lactis subsp. lactis B/C NC_002662.1 - 1696929 1697142 ccpA [COG1609]
7 Clostridium perfringens B/C NC_003366.1 + 1920885 1921031 spoVB [COG2244]
8 Nostoc sp. PCC 7120 Cya NC_003272.1 + 3317529 3317718 alr2722 [COG1653]
9 Thermosynechococcus elongatus BP-1 Cya NC_004113.1 + 1938840 1939101 tlr1853 tlr1854 [COG0535 COG1215]
10 Staphylococcus epidermidis ATCC 12228 B/C NC_004461.1 - 1920992 1921179 SE1883 [COG1316]
11 Methanococcus jannaschii A NC_000909.1 + 422414 422466 MJ0480 [COG1422]
12 Campylobacter jejuni P-e NC_002163.1 + 1396194 1396279 Cj1459 Cj1460 Cj1461 [- - COG0742]
13 Ureaplasma urealyticum B/C NC_002162.1 + 34240 34633 UU031 [-]

0  ________________________________________________________________________________
1  AAAAGTTCATGCTTTTTTTATAAAATTAATTTATTATTAATAATTCATTTTTTGTTTTGTCTG-----------------
2  TTTTACCCCCACCCCAAAAAAATGGACAAATATATATTCTATATCCATACCTAAAAATCCTGCCTGAAAATCAA------
3  CGTTTGCACAATTCGCTATAGTCAATGTTATAGAGCCGCAAAAGAAAGGGCCATATCCGAGGATATGGCCCTTTCTGTAC
4  --------------------------------------------------------------------------------
5  TATTCCTCCTATACAATTATTTTACCACAAATTTATGTGAAATATGAT--------------------------------
6  AATGGTTCCTCCAATATTTATGAAAATGAGTTTCTTAAATTCTCATGAAAATAAAAAACACTATATTCCCTATTCTACGC
7  ATTTCCTCCCTAAAAAAGCCTCAATAATAAATTTTAACAATTAAAAACTCATAGATAATTAATAATAATT----------
8  AATCTCTGTAATATAAGAAATACAACTTATGTATGATACCTTATAATAGTGCAGAAAAATAACGATCAAGCAAATTGATC
9  ACCCTCACGGTAAAAGATAACTTAGGTAAATAGCAATAT-----------------------------------------
10  TGTATATTTTTATAAATTATATCAAATTAGCTCTATAGAGATTTTATACATTTAAACTA---------------------
11  --------------------------------------------------------------------------------
12  AATGCGTGATTTTATAAAATTTCCTTTTAAATTCTAGTGAATTTTAGAAAAATT--------------------------
13  TTTAAAATAATTTGTAAAAGAGAATGTTCTTTCATCTATACCAAATATTAGTAATTTATTAAAAGAATCATATGTTGAGC

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  CTAATAGTTAAGTTAATAATAACATAATTTTGCAGATTTGCACGCACAGGGGGGCCTTTACTAAATAAATTAGTGTTTAA
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  TATTTTTATTAAAAAATCACGTAAAAAAACATAGCTGAAG----------------------------------------
7  --------------------------------------------------------------------------------
8  ATTTTTCTATTGATGTAAAA------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  TTCTAGAAATAATTATAAAAGTGAGTTACGCAGATAGTGGTTCTGAAGTAGTAGGTTTATGCGAATACATAGTATTACCT

  
0  _________________________________________________________________CAATATAATAT_AAA
1  -----------------------------------------------------------------TGATATAATAT-AAG
2  -----------------------------------------------------------------ATTTTAAATTT-TGT
3  ATTCGCCAATTTTCACAATTAATGATAAAGTTTTACATGATAGTTATCACGATTATGCGTTGAAGTTCGGCGCAAT-ACT
4  ------------------------------------------------------------------TATATTATAA-GAA
5  -----------------------------------------------------------------ATGATAAATAT-AAA
6  -----------------------------------------------------------------GTTGAAAAGGT-TTA
7  -----------------------------------------------------------------ACCTCCTATAT-AAT
8  -----------------------------------------------------------------GGATATAATAC-TAC
9  -----------------------------------------------------------------GTCTTTAATAT-AAA
10  -----------------------------------------------------------------TACGATTTCTT-AAA
11  -----------------------------------------------------------------------TCCTT-ATA
12  -----------------------------------------------------------------TTATATAATAT-AAA
13  AATCTTCTTTATATTAAAATTATTTTATACCTTAAAACCG-------------------------AACTAAAATATTAAA

  
0  GAATATTT_A__AAATAATTTGTAAATAAAATGTGTTTGTAGGGGTTTCGCTTGGAGAGTGCCCAAAAAACTGAAAAGGA
1  GAAAATTT-A--AATTAGAGAATAGGAGAAATTCAC--------------------------------------------
2  TAATATTT-A--AAATAATTTTTGTGGTATAATCAAGGGAGAGATTTTTGAGTTTTGAGGTGGAGT--------------
3  TGAAAATT-A--AAATAATTTGCAAATAAATCATGCGATAGCGACTTTAGATGGTAGTAAGAATTAGTTTGAATTTAAGG
4  TTCTATTC-GCTAAATAATTTGCAAATAAAATATATATAAGTTAAACATCAAAGGAAGTAGTAATTTCACAAATAATAAT
5  GAATATTA-A--AAATTAGAAAGGTGGAATTTTAA---------------------------------------------
6  CAGTTAAT-G--ATATAATTTGTAAATAAAAATGGTTTTCATAAATACTATGAATAAAAAGAAAAGAAAGAGGATAGCCA
7  GAATATTT-A--ACATAAGTTGTGAATATTCATTATTATTGAACTTTTAAATAGGGTGGTGATTCA--------------
8  GAATATTT-A--AAATAAACACATCATCAAAAATTGAGTAAAACCCGTGAGAAAACCTTAATTACTCTAATCAATTGCT-
9  AAATATTT-AT-AAATAATAAGCATTGCTAAACTGGCAGCAGGTGCAGGTGAGGTCTCGCCGTCCTTGCGCTCAGCGGAG
10  GAAAATTT-A--AAATAATTAATGAATAGGTCTATAGATGTATACCAAATAAATTTATTTATAATATAATGACCTATGTA
11  TAATATTTTA--AAATAATTTTTAAATAACCACATTAAGGTGAGTTA---------------------------------
12  -AATATTT-A--AGGAAAAACC----------------------------------------------------------
13  CCAAATTT-A--AAAAAGTTTTTAATTATAAAGGACAATACTACGATGGAAATGAAATGACAGAAATCTACAATTCATTA

  
0  AGGAGGCACTTGC___________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  GGGCCAATTC----------------------------------------------------------------------
4  ATATAATGATAACTTGAATTTATAAATTTATTGATATATTGTGATTAAAACACATTAAGAGGGATTATT-----------
5  --------------------------------------------------------------------------------
6  ATT-----------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  TGCTAAACTGTTCATCAACGCCAACTCGGATAAAGTTTTGTCTAGAAAGTTTTCAATTGCTTGCATAAACTCATTTGCTG
10  TCATAAAACAACAAAATTATTGAATAGGAGTGGTAGGG------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  CAAAAGGGAAACATTTACCCATAATAATGTTTTATGACAATTAATTAAAACTTTTTTGTTTGCTTTTATTTTAATAACTT

  
0  ___________________________________________________
1  ---------------------------------------------------
2  ---------------------------------------------------
3  ---------------------------------------------------
4  ---------------------------------------------------
5  ---------------------------------------------------
6  ---------------------------------------------------
7  ---------------------------------------------------
8  ---------------------------------------------------
9  TTGTTGCCTCTTTAGCTTGGCCTTGATTGAATTCCCTAAGGAAGATACTCA
10  ---------------------------------------------------
11  ---------------------------------------------------
12  ---------------------------------------------------
13  GTTTTGTTTATATTTGATTATC-----------------------------