BLISSBreaker Lab Intergenic Sequence ServerHome


Intergenic view options: Interleaved


NC_000964.1 Bacillus subtilis (- 960495 to 960845) circular

Islands  C.C.G..C.AG.AGAGA.GAGAGCC..CGGCGG.CCGA.CAGC.GCCCAA..G.......G...GAA.AACA.G..AA..
5'-   CTCTGTTCTAGTAGAGATGAGAGCCTTCGGCGGTCCGATCAGCTGCCCAATTGTTTTTTTGTTTGAATAACATGTTAATT
       |         |         |         |         |         |         |         |    
       960840    960830    960820    960810    960800    960790    960780    96077
       |         |         |         |         |         |         |         |    
3'-   GAGACAAGATCATCTCTACTCTCGGAAGCCGCCAGGCTAGTCGACGGGTTAACAAAAAAACAAACTTATTGTACAATTAA
Islands  GAGACAAGA.CA.C.C.AC.C.CGGAAGCCGCCAGGC.AG.CGACGGG..AAC,,,,,,,C,,,C..A..G.ACAA..AA
Term (99.99)%  GAGACAAGATCATCTCTACTCTCGG-------------------------------------------------------

 
Islands  C,,,..A..CCGA.A.G.CAAC.C......,,,.ACGA.....GA.A.CC..G...A.CAC..AC.C.GC..G...CGC,
5'-   CAAATTATTCCGATATGTCAACTCTTTTTTAAATACGATTTTTGATATCCTTGTTTATCACTTACTCTGCTTGTTTCGCA
       |         |         |         |         |         |         |         |    
  0    960760    960750    960740    960730    960720    960710    960700    96069
       |         |         |         |         |         |         |         |    
3'-   GTTTAATAAGGCTATACAGTTGAGAAAAAATTTATGCTAAAAACTATAGGAACAAATAGTGAATGAGACGAACAAAGCGT
Islands  G...AA.AAGGC.A.ACAG..GAG,,,,,,...A.GC.,,,,,C.A.AGGAAC,,,.AG.GAA.GAGACGAAC,,,GCG.

 
Islands  ,,.AGAGAAGG,,,,,..A...C.CC,,,,,..A..AAG.G.CA.,,,,,GC.G..ACAACAAGG.....CAACAA...C
5'-   AATAGAGAAGGAAAAATTATTTCTCCAAAAATTATTAAGTGTCATAAAAAGCTGTTACAACAAGGTTTTTCAACAATTTC
       |         |         |         |         |         |         |         |    
  0    960680    960670    960660    960650    960640    960630    960620    96061
       |         |         |         |         |         |         |         |    
3'-   TTATCTCTTCCTTTTTAATAAAGAGGTTTTTAATAATTCACAGTATTTTTCGACAATGTTGTTCCAAAAAGTTGTTAAAG
Islands  ..A.C.C..CC.....AA.,,,GAGG.....AA.AA..CACAG.A.....CGACAA.G..G..CC,,,,,G..G..,,,G

 
Islands  GA.AC.A.A.A.CGA..AA.AGAGA.AAC.A....A.AA.AA..A.,,,,.AA.A..GAC.....AC..AGAGA.GA.A.
5'-   GATACTATATATCGATTAATAGAGATAACTATTTTATAATAATTATAAAATAATATTGACTTTTTACTTAGAGATGATAT
       |         |         |         |         |         |         |         |    
  0    960600    960590    960580    960570    960560    960550    960540    96053
       |         |         |         |         |         |         |         |    
3'-   CTATGATATATAGCTAATTATCTCTATTGATAAAATATTATTAATATTTTATTATAACTGAAAAATGAATCTCTACTATA
Islands  C.A.GA.A.A.AGC.AA..A.C.C.A..GA.,,,,.A..A..AA.A....A..A.AAC.G,,,,,.GAA.C.C.AC.A.A

 
Islands  .A.G..C..A.,,,..CCAAGAGG.GA.AAC
5'-   TATGTTCTTATAAATTCCAAGAGGTGATAAC
       |         |         |     
  0    960520    960510    960500    
       |         |         |     
3'-   ATACAAGAATATTTAAGGTTCTCCACTATTG
Islands  A.ACAAGAA.A...AAGG..C.CCAC.A..G

IGR  -   960495  960845  ()  16  katA

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 - 960495 960845 katA [COG0753]
1 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 Fus NC_003454.1 + 951992 952073 FN0315 [COG2207|COG3708]
2 Mycoplasma penetrans B/C NC_004432.1 - 852143 852585 MYPE6630 [-]
3 Mycoplasma penetrans B/C NC_004432.1 + 512636 512782 MYPE3920 MYPE3930 [COG1012 COG0596]
4 Pyrococcus furiosus DSM 3638 A NC_003413.1 - 980985 981071 PF1025 [-]
5 Methanococcus jannaschii A NC_000909.1 + 189214 189290 MJ0193 [COG1727]
6 Campylobacter jejuni P-e NC_002163.1 + 1186233 1186289 Cj1255 [COG1942]
7 Listeria monocytogenes strain EGD B/C NC_003210.1 - 600345 600836 lmo0560 [COG0334]
8 Clostridium perfringens B/C NC_003366.1 + 1183149 1183265 CPE0982 [-]
9 Clostridium perfringens B/C NC_003366.1 - 2632627 2632901 CPE2287 [COG1989]
10 Methanosarcina mazei strain Goe1 A NC_003901.1 + 1547853 1548907 MM1301 [COG0517]
11 Methanosarcina mazei strain Goe1 A NC_003901.1 - 3554304 3554953 MM2948 [-]
12 Methanosarcina mazei strain Goe1 A NC_003901.1 - 555310 556053 MM0435 [-]
13 Bacillus halodurans B/C NC_002570.1 + 989563 989874 BH0916 [COG3325|COG3979]
14 Bacillus subtilis B/C NC_000964.1 + 960495 960845 ygaL ygbA ygaM ygcA [COG1116 COG0715 COG0600 COG2141]
15 Bacillus subtilis B/C NC_000964.1 - 958317 958797 ygaK [COG0277]

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TAAA----------------------------------------------------------------------------
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10  GGGATTACCAAGAGAGAGATATAAAATTAATGATATTAATTTATAGGTTTACCTGCCGAAAGCAGGATACTCTATCTATT
11  TACACACTTTTATTTACACTGTTAAATCCCAAACTTTAAGCAATTTATCTTTTTTAAACTTCGCTTGGTTTCTTAAAATC
12  CCCCTTTATTCTTCTGAAAAAGCTGCCCTGGTTCGGGGAACCTGAGGGCGCCAAACTTTTTCCCGATTTCTTTTTAGGAT
13  --------------------------------------------------------------------------------
14  GTTATCAC------------------------------------------------------------------------
15  ACAAAAAAGG----------------------------------------------------------------------

 
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10  TCATCTGTTTTCGATTTCGCCTAATTTTATTTTTATCTTATTTGTTATTTAATTTTATTCTCCGCCGATTCATCTGTTTT
11  TTTTGATATTCTTATGACTTTTTTGCGTTCATATAGTTTTTTTGCTGCATTTACTCTCTTCTGGCTTTCTTTCACTTTCT
12  ACTCTTTTGAAGTACTCATAGACGGGAGTTTCTATCTTCGGAATTTTTCTGGGGTTTCCTTACTGTAATTTATCGTAACA
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------

 
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10  CTATTCATCTGTTTATTTTCACTATACATTGACTTTTACTTTATATATTTATTTAACATTGAGCTTTTACAGCTTTTAAT
11  TATGATTTTTTTATTTTCTTATGGCTTTCTTCTGTTTTCTTATGTCTTTTTTGTTTTCTTTTGCTTTTAATTATCTATTC
12  CTCTTCTAAAATTCTCTCTACATGACTGAATTCTATAACTTTTTTCTAAATCCTGATTGGGGTTTAATATTTGCTTCTTT
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------

 
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10  TTTTATACTTATATTTTGCTGGAGGAGCATTGGATTCTATCCAGA-----------------------------------
11  ATTACTTTGTTGTATTTTTCTTTTT-------------------------------------------------------
12  CAGTAAAACCTCAGTTAAACTTCAAGCTAAAAACAGGAAATCTAAACTTTACAGTCTGAATAATTCAAATAGTATTCTAA
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------

 
________________________________________________CTCTGTTCTAGTAGAGATGAGAGCCTTCGGCG
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------------------------------------------------ACTATTGACTAAAACAAACTAAAAAGTAGTGT
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-------------------------------------------------------------------------------A
10  ------------------------------------------------TTTTTACATTATGTTTTTGTCTGAATTTACTG
11  ------------------------------------------------GTGCCTTGCAGAAAAACATTAATGTTGCCTGC
12  AATTTTTTTATTACTAAAAGAGGCGAAAACTGCCAGAACAGTTAAATATTTGCCTGGAAAAAAAGGGTTTAATCATTTTT
13  --------------------------------------------------------------------------------
14  ------------------------------------------------CTCTTGGAATTTATAAGAACATAATATCATCT
15  ------------------------------------------------CCCTTATCTA--AACGATAAGAGCCTTCGGTG

 
GTCCGATCAGCTGCCCAATTGTTTTTTTGTTTGAAT__A_ACAT_____GT__TAATTCAAATTATTCCGATATG_TCAA
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TAATTACTAAACACTACTTTTTTATTTTTTTTGAAA--A-TAATACTTAGC--TAAGTCAC-TTATTTACAGAAC-TCTT
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---------------------------------ACT--C-TTTC-----TA--ACCTTGTGAAGTCTATTTTATA-TTCA
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-------------------AAACATGACATTTTCGT--A-ACCT-----TA--GAGATCATTTTTGTAAGAAAAA-GCGC
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TATACTTTAATTAAAGTAATTTCATAGGGGCTGTAT--A-AAAT-----ATAATAATAAAACTTATTTTACTACA-TGCC
10  AATTTGTCAAGATGTCAATTATTTTCACCTTATACT--A-ACAT-----AC--TTATT----TTCGGCTAATCCC-TTCA
11  AAGTCTCTGTAAAAAACGAAAATAATTTGTGAGAAT--ACAAAA-----AT--ATTTTGGAATTATGCATAAATAATTTA
12  AAGGCATTTTAATACTTTTTTCTGAACTATTATAAG--G-ATGT-----AT--CTACTGATAGACTATCTAAATA-ATGT
13  ------------------------------------------------------TCAAGGAGCGACGAGCAGCTT-ATGA
14  CTAAGTAAAAAGTCAATATTATTTTATAATTATTAT--A-AAATA----GT--TATCTCTATTAAT--CGATATA-TAGT
15  TTCCGATCAGCGCGATAAAT-TTGAAAAATTTGTACTGA-CCAT-----GT--TAATTCATACAATACCGACCTG-TCAA

 
CTC____TTT___TTTAAATAC___GATTTT_TGATA_TCCTT__GTTTATCACTTAC_TCTG_CTTGTTTCGCAAATAG
---------------------------------------------------AATTCCT-AATA-AATTTGTACAAAAAAT
-TC----TTTAAATTAAAAAACATAGATTAG-AGAAAATGAGTAAGTGTATTAATAAGGTCTA-GG-GTTTCTAACATAA
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GAA----AAT---TTTATAT-------TTTT-TGAAA-TCCTT--ATTTATCACCTGG-GGGG-ATATATA---------
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ATG----ATT---TTTAAATTC----ATTTT-TTATA-TACTT--GTTTATGTGGAGA-GCTTTCATTTTTCCCAAG-AG
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CTT----ATT---TTTAG---------TATT-TAAAA-AGATT--ATATTTAA-TTA--------TTTATTAAATAATAT
10  GGA----TTT---TTTGTAT--------TTT-TCAAA-AGATA--TTTGCAAATTTAC-ACTC-AAATAAATACAAGCAA
11  CA-----TAG---TTTAACTAA---ATATTT-TTCTT-TTGAT--ATTTCGCAAA-AG-TTAG-GTTTAAACTTATCAAG
12  TAG----TGC---AATGAGATA---ACTATT-TATAA-TAAGT--ATAAGTACTTTCT-AATA-AAGTAAAAACACAAAA
13  CTG----TCC---CTCTGCAGA---GGGACA-GTCAT-AAGCT--AGAAACCCTATTC-GAGG-AGTACCCTAAGACCGT
14  ATCGAAATTG---TTGAAAAAC---CTTGTTGTAACA-GCTTT--TTATGACACTTAA-TAA---TTTTTGGAGAAATAA
15  CTA----TTT---TTTGAGGGT---GTTGAC-ACTGT-ATCAG--ATTGCATCCCCGC-TTTT-TCCTTATACACTCTTT

 
AGAAGGAA__________AAA__TTATTTCTCCAAAAA_TTAT__TA_AGTGTC___ATAA_AAAG___CTGTT_ACAAC
ATAGGGAA----------A----TTATTTCTCCAAAAA-TATA--TA-ATTGTT---TTAAGAAAG---GTGGA-GGAAG
AAAAGGTAGAGTTAACATAAA--TTATTTCTCCAAAAACTTAA--CAGAATGCT---AAAA-ATAT---ATGTTTATTAT
----------------------------------------TTT--AA-AACTCA---AATT-GCAT---ATTTA-ATCCT
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A-AAGCAA----------ATA--ATGTTAGAGCAATAA-TTCC--AG-TATCCG---AATT-AGTC---TTATC-CCTTG
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TAAACAAA----------ACA--TTAAATGAATAAAAA-AAAT--AA-ATTATTCGTATAA-TGAG---C-----AAAAA
10  AAAAGTAA----------AAAAGTAAATTCCAGTAGAA-ATAT---A-GGGGTT---AGAA-AGATTTCCTGTG-AGAAA
11  AAATCAAA----------AAA--TAGCCTTTAAAATGG-TTTT--TA-AAGG-----ATAA-AAAG---CTTTT-TAATC
12  TAACTTAA----------AAC--CTGGATTAATTAAAA-ACAT--AA-AATGAC---TTAA-AAAA---TAGTT--CAAC
13  TACACAAA----------CTT--ATTGACAGTACCATG-ACCA--CC-GCATGT---TTTC-GCAA---ATCTA-ACAAT
14  TTTTTCCT----------TCT--CTATTTGCGAAACAA-GCAGAGTA-AGTGAT---AAAC-AAGG---ATATC-AAAA-
15  TCCCCTGA----------CGC--ATAAGCTAGAGAAAC-TAGA--AT-ACGAGA---GAAA-GAGA---TGTGG-GAGTG

 
AAGGTTT____TTC_A__ACAATTTCG_____________ATACTAT_______ATAT_C_G__ATTA_____ATAGAGA
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TATTTTC----TTG-ATAACAATTAGT-------------A-ACCAT-------TTAAAC-C--ATTTTTGGTATATAAA
TATTAGA----AAA-T--CTAATAAGG-------------ATTTTTT-------ATTT-A-T--ATTA-----GTTTAAA
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--------------------------A-------------AAACCAT-------TTTC-A-T--TCTA-----ATTATTT
-------------------------------------------------------AAG-A-A--TATT-----TTAATTT
GCTCGCT----TTA-A--TATTATTTC-------------TCCCTAA-------TACT-C-C--CTTA-----ACCGCAT
---------------------GAGGAT-------------TTTTAAA-------GGCT-A-A--ACAA-----ATATAAA
AAGCTTA----ATC-A--AAAATGTT---------------TACAAA-------AAAT-------TTC-----A---AGA
10  AAT----------------CAATAGCG-------------TT-CTAA-------ATAT-A----ATTA-----AGAATGT
11  ATTTTTTCACCTTC-A--CCATATGAGTAAACTGGCGCATATACTACCAAAATAATAT-TAG--CTTA-----AT-GAGA
12  TTGATAC----CTGGA--ATAACTTAA-------------AAAAGTTC------AGCT-T-G--ATAC-----CTGGA-A
13  AAAACTA----GTA-A--AAAA----G-------------ATATTTT-------CTTT------ATAG-----ATAAAGA
14  ATCGTAT----TTA-A--AAAA----G-------------AGTTGAC-------ATAT-C-GGAATAA-----TTTGAAT
15  TGGAAAA----GAC-A--AAATTGACC-------------GGACGTA-------TCGT-G-A--CACG-----GGATGAT

 
T_AAC__T__ATTTTATAATAA_T_TAT____AA_AATAATATT___GA_C____TT_TTTACT__TAGAGATG_ATATT
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TGAAA--T--ATGTTA-AATGG-A-TAG----CA-TTTAAAAAG---GT-A----GA-GTTAAT--TT---ATG-TTATT
T-AATCTT--ATTTAATAATAA-AATAT----AA-ATTAATATT---GAGC----TT-AATGCTCTTATTGATTTATATA
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G-TCA--A--ACCTTATAATAA-T-TAT----AA-AAGGTTTGA---AG-G----AA-AACACG--GTGATATA-T----
T-TTA--G--ATTTTAGAATAA-T-TAT----AA-AAATTTAAG---GA-G----TT-AAAA------------------
C-CCC--C--TGGTGCGGTTAT-T-TTT----TT-GTTACATCT---TC-T----AT-ATCTAC--TCATTAAA-ACCTA
A-TTA--A--AGAGTATAATAAAT-TAT----AA-AGTAATATT---TA-C----TT-TGTTGA--TA-ACTTT-ATTTT
T-G---------TTTATAATAA-T-TAT----GA-AATATTAAT---GA-G----TAATTCATT--TTTGGATG-ATTTG
10  T-TTA--T--TCTTTTTAACAA-T-TTTTAA-AA-AAGAATATTTCCCA-C----CT-GCTACT--TCCCCCTA-ATATT
11  T-AAC--T--ATTT-ATAATAA-G-TATATGTAA-TATAATACT---GA-A----GT-AAAAAC--ATAATACA-ATTAT
12  T-AAC--TTAAAATAAAAATAA-C-T-T----AA-AATAAAAGT---AA-C----TT-AAATAA--AAATAACT-TAAAT
13  G-AAC--T--ATTTTCTAAAGA-T-TCT----AATAATAATATT---GA-ACATATT-TGTTAT--TACATTTA-TGATC
14  T-AAC-----ATGTTATTCAAA-C-AAA----AA-AACAATTGG---GC-A----GC-TGATCG--GACCGCCG-AAGGC
15  C-CGG--A--CTATAACGAAGC-A-AGA----AC-CAATATTAA---CC-T----AA-GCTTAG--AAAGGTAT-CCTGA

 
ATGTTCTTA_T_AAATTCCAAGA_GGTGATAAC_______________________________________________
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-TCTCCTTA-TTAAATTTTTTCA-TCTATTTAACTAGTAAATTTGTCTTTTTTAAATTTCAAATTTTGAAAGGTAATAAT
AGGA----A-T-AAATT---------------------------------------------------------------
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AGCAAACGT-T-CTCATTAACTA-CATTTTAAAAAATTTCAGAAAAATTGGTTTTTATGCTTGAAAATATTCTCAACAAT
-TATACTAA-T-AGAATGAAAGAAGGTAATAATT----------------------------------------------
GGAGGCAAT-----------------------------------------------------------------------
10  TT-TTCTAC-A-TGACTCGATAT-TTTTCATTCTGAGCAAAAATCTCCAGTGGAAATAAGGGGGTTATTAAAAAATTCCT
11  AAAGTAAAA-C-CACAAAACAGC-TTATAGCGGGGGAAAAAC--------------------------------------
12  AAAAATAAC-T-TAAATAAAAAT-AACTTAAACTATTTTTAGAGTGGGGGAAAAAAC-----------------------
13  ATTTTAGTAGT-AACTTTTATTT-TTAATATTGTTACTACAAATAAAAATTGATGAGGAGGAAGAGATGA----------
14  TCTCATCTC-T-ACTAGAACAGA-G-------------------------------------------------------
15  CATCATTGT-G-TTTTGCCAAAA-CAAACAGGATGCACTCAATGCGCTGAAATGGGCGCGTGAAAACCGTGTGCCTTTCC

 
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TATTAACTAAAT--------------------------------------------------------------------
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GTGTAAACTAACAACATAGGTAAGAAAAGTTGACCTACTTAACGCACACAAGCCAATGTTTTTCTTCTTTATAACATTGC
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10  GACTGACTTTAAGAAATTGCGCTTAAAGAAGACATAAATCTCAACCTTAAAAAAGAGACTCAGCGCCGTCTTAGAGGAAA
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  GTATTAGAGGCGGCAGACACAGCTATGAGAACTTTTCCCTTTTAAATAACGGTCTTGTTATTGATTTAAGCGAG------

 
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ATGTATTTGCGTCAGGTTTTCTACTTTTCCTTATAGTCAAAATATTTAAACAAGGAGCGATTATAGT-------------
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10  ATTTAGATCATGCTAAAAAGGAATGCCGTTATCATTATGTACCATTGACTCGTATATATTAAGTGTCATAAAAAGGTCTC
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------

 
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10  AGAAGTGCGGGAAAGAGATTTACAGGAAAAAACCGGAAAGATACTTAAAAGAAGGATTTTACCGATAACCAATTTTTCAG
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------

 
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10  GATTCCTTCCAGAAAAGTAACAAATGGGGAAGTTTAAAAGAATCTGGAAGTATTTTCCACAGGAAATTGAAAACCTGGAA
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------

 
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10  GGGCTTTAAAGAGAGGATTTATCGGTTCTGGGTGCTGAACAGGTAAAGGGGGAACTGCAGCCA
11  ---------------------------------------------------------------
12  ---------------------------------------------------------------
13  ---------------------------------------------------------------
14  ---------------------------------------------------------------
15  ---------------------------------------------------------------

Complementary Intergenic Regions

IGR  +  960495  960845  ()  15  ygaL ygbA ygaM ygcA