BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (+ 923007 to 923093) circular

Islands  .ACGGA.GA.GG...AC,,,,,GA.GCAC...CCG..A.CA..A.G,,,.GA.AA.CA....CAA..GCA.AGGAAGG.G
5'-   TACGGATGATGGTTTACAAAAAGATGCACTTTCCGTTATCATTATGAAATGATAATCATTTTCAATTGCATAGGAAGGTG
     |         |         |         |         |         |         |         |      
     923010    923020    923030    923040    923050    923060    923070    923080 
     |         |         |         |         |         |         |         |      
3'-   ATGCCTACTACCAAATGTTTTTCTACGTGAAAGGCAATAGTAATACTTTACTATTAGTAAAAGTTAACGTATCCTTCCAC
Islands  A.GCC.AC.ACC,,,.G.....C.ACG.G,,,GGCAA.AG.AA.AC...AC.A..AG.,,,,G..AACG.A.CC..CCAC

  
Islands  AGACGG.
5'-   AGACGGT
     |   
     923090    
     |   
3'-   TCTGCCA
Islands  .C.GCCA

IGR  +  923007  923093  ()  20  yfhC

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 + 923007 923093 yfhC [COG0778]
1 Listeria innocua Clip11262 B/C NC_003212.1 + 1029709 1029927 lin1006 [-]
2 Clostridium perfringens B/C NC_003366.1 + 290910 291055 CPE0220 [-]
3 Shewanella oneidensis MR-1 P-g NC_004347.1 + 4719119 4719234 SO4524 [COG0583]
4 Listeria innocua Clip11262 B/C NC_003212.1 - 574670 574780 lin0545 [COG0614]
5 Clostridium perfringens B/C NC_003366.1 - 2720685 2721084 rpsD [COG0522]
6 Oceanobacillus iheyensis B/C NC_004193.1 + 478613 478814 OB0452 OB0453 [COG0609 COG0609]
7 Oceanobacillus iheyensis B/C NC_004193.1 + 572057 572290 OB0539 OB0540 OB0541 [COG4606 COG4605 COG4604]
8 Clostridium perfringens B/C NC_003366.1 - 1536992 1537693 eno [COG0148]
9 Listeria monocytogenes strain EGD B/C NC_003210.1 + 1038117 1038335 lmo1007 [-]
10 Listeria innocua Clip11262 B/C NC_003212.1 - 2320693 2320907 lin2290 lin2289 [- -]
11 Listeria innocua Clip11262 B/C NC_003212.1 + 396810 396937 lin0384 lin0385 lin0386 [COG0672 COG2822 COG2837]
12 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 - 1181290 1181522 CAC1028 [COG1075]
13 Listeria monocytogenes strain EGD B/C NC_003210.1 - 581040 581149 lmo0541 [COG0614]
14 Listeria monocytogenes strain EGD B/C NC_003210.1 - 2274751 2274960 lmo2186 lmo2185 [- -]
15 Staphylococcus aureus subsp. aureus N315 B/C NC_002745.1 + 1945112 1945388 SA1699 [COG1295]
16 Staphylococcus aureus subsp. aureus N315 B/C NC_002745.1 - 2340088 2340300 SA2079 [COG0614]
17 Bacillus subtilis B/C NC_000964.1 - 3929347 3929502 ywbL ywbM ywbN [COG0672 COG2822 COG2837]
18 Neisseria meningitidis serogroup B strain MC58 P-b NC_003112.1 - 1884981 1885138 NMB1796 [COG0431]
19 Listeria monocytogenes strain EGD B/C NC_003210.1 + 391474 391603 lmo0365 [COG0672]

0  ________________________________________________________________________________
1  TTTTGTCACCTTTCTTTATAAGAAAATCCCGTGAAAATCAGGTGGGAGTAAGCTTCATAATTTCATTCCATTATAGCTTA
2  ACAAAATCCTCCTTTTTAAACTTAATATATTAAAAAAAATCTTAATATAGAGAA--------------------------
3  --------------------------------------------------------------------------------
4  AAAATAAAAATAATTTGTGTTATGTTTCAC--------------------------------------------------
5  AAATAGAATTTAATATTTAACTGCATAAATTATAAAAGAGAGCTATATCAATACTATTTATGAGAGAATTTATAAATATA
6  --------------------------------------------------------------------------------
7  TAACAAAGGTAATAATTATTTGTACAGCTATAGCAGCAAAATAAAATTGACAGTAAGAGGATAGCGCAAGTTCCTTTTAC
8  TTTAAAGAAGGCTGTCCTAAAGAGTTGATAACTCATCTTGTTTAGGAGAGCCTTTTTTTTATACCTTAAATTTATATATT
9  TTTCGTCACCTTTCTTTATAAGAAAATCCCGTAAAAATTAGGTGGGAGTAAGCTTCGTAATTTCATTCCATTATAGCTTA
10  AACAGTAAATATTTATTAATCCGTGGACAAACGTTGCCGTCCA-------------------------------------
11  AAAACTTCGATTTCATTATCGGAGTTTTTTTATTTGGAT-----------------------------------------
12  AATATCACTCTCC-------------------------------------------------------------------
13  ACATAAAAATTTTTTGTGTTATATTTCAC---------------------------------------------------
14  TAGGAAATAATTATTATCCATGGATAGGAGTTGCTATTCA----------------------------------------
15  GATGATTTTGTTTTT-----------------------------------------------------------------
16  ATTTAAAAAGGTAAATCGATCGTTGATTGGCATAAAGAGATGAAATTTGACGTTCGGATTTACCCTTTTTTGTGGGGATT
17  TCGTTCATTTTCCTTCAAAGGGCTGTTCTGTAAAAGGACAGCTTTTTTGCTGTCCATCAAGGTTTTCAGACC--------
18  AGGTAAATCTGTTACATAAAAAAAGCAATTATAAGGCAAAGCCGGATAAGTGGGAACGCTGTGGCGGCGGGCCGG-----
19  AAAAAACTTCGATTCCATTATCGGAGTTTTTTTATTTGGGT---------------------------------------

  
0  ________________________________________________________________________________
1  AAAAGGGAGAAAAGCAAAATATCTGAAAATATTAC---------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  AAATTTATGAATTCTTATAAGTTAAGAGTTTGATATAGCTTTTTTATGCCTATACTAAAATTCATATATAAATAAGAGTG
6  --------------------------------------------------------------------------------
7  TGTTTTTATATGGAAATCAATTCTAAATTTCTTGTGTATGGTAAGAAAC-------------------------------
8  TTTTTCTAATAATATTAAAGTAAATTTTGAAAATTAATTTATAAATTCATTTATAAGTGCAAATAATAAAAATAGAATTT
9  AAAAGATAGAAAAGCAAAATGTCTGAAAATATTAC---------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  TATAGGGATGTTAAGATATTTTGCTAAATTTTTTGCGAAAATAAAAAAATAAAT--------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------
19  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  ATTTAAGTGGAATAGATTGATAGCTAATTGAATCTAGTTACTAAAATTAGAGTTTATTATAAATGAATTTATTTTATAGA
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  AAATTACTTAATTACAAAGGACAAGGAGAATAGAAAATGAGCAAGAAAAAAACTTTAAATGGAATACAACAAAGTATGAA
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------
19  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  ATAAATAAGTTTAAATTTATAAGCATAAGTTAGT----------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  ACAGCACAATGCTGAATCTTCAAATTCAAAAACTGGATTTAATGAGAGAAGTAATACAGCTAAAGAACCAGGAATAGCAA
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------
19  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  ATACAAAAGGACTTTAAAATTATGAAAATGAGCTTTTAAATAGCTCATTTTTCTTTTAAGGAATTTAAATTAAAGAATCT
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------
19  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  TTGAATTTAAAAAATAAGATTTTATAAGTTTTTTAGAGGGATTAATATTTATGGTTAATTCATATAAAAGACTAGTCTAT
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------
19  --------------------------------------------------------------------------------

  
0  _____________________________TACGGATGATGGTTTACAAAA_AG______ATGCAC___TTTCC__GTTAT
1  -----------------------------TAAAAAGCCTTGCACTTTTAT-TT------AGAATG---CTATA--AGATA
2  -----------------------------AAACAATTATAAAAATCTATG-AT------AATATA---AGTAT--GTTAA
3  -------------------------------------------------------------CGAG---TCTCC--CTTAA
4  -----------------------------CTTGTCAATCCTCCCTCTTTT-CG------ATATAA---TTACT--TTTGT
5  -----------------------------ATTTTAAAGATTTAATAAGAT-AA------TTTTGA---TTAAA--TGGGT
6  --------------------------------------ATTCTTTTCTCC-TC------TATGTT---ATAAT--GTTCA
7  -----------------------------TTAGGTTGAT--TTTACAAAA-AGCCTTTTATATAA---TT-----GATAT
8  TAAGTATAATAGAGATTTACTTAATAAATTATAAATTTTAAAGGTATTTA-AG------GATTAT---TTTTC--TAAAA
9  -----------------------------TAAAAAACCTTGCACTTTTAT-TT------GGAATA---CTATA--AGATG
10  -----------------------------TGGATTTTTTTGTTGTGAAGG-CT------GTTGAA---AAATA--AAATG
11  -----------------------------GAAAACATGAAAAAATTTATT-GA------CTTTTT---TGAAC--ATGGA
12  -----------------------------TCAAACACTAATAATAAAAAA-CC------ATGAAT---TTGA----TTTT
13  -----------------------------CTTGTCAATCCTCCCTGTTTT-CG------ATATAA---TTACT--TTTGT
14  -----------------------------TGGTTTTTTTGAGTATTTAAT-TA------GTAAAA---AAATA--ATCTG
15  -----------------------------ATAAGGCAATACTTAACAATT-TG------GTGTACGCCTTTCATAGTTAT
16  -----------------------------AGCACTAGCTATTGTAAATGT-AT------ATGCAA---TCTTG----TAT
17  -----------------------------TTCAAATTTTAATTGACAAAGGAC------AGGAAC---TGGCT--ATGAT
18  -----------------------------CTTGTTTGCAGGGGAAATCAC-AT------ATATAA---TAATC--GCTAT
19  -----------------------------GAAAACATTAAAAAATTTATT-GA------CTTTTT---TGAAC--TTGGA

  
0  CA__T__TATGA__AAT____GATAATCATTTTCAATTGCATAGGAAGGTGAGACGGT______________________
1  GT--T--TTAAT--AAT----GATAATCATTTTCAGTTAGAAATGATTGGTTGAATGTGGAAGGGGCCACCGGAT-----
2  CA--T--TAT------T----GATAATCATTTTCAATAGGAAAAGAAAGTCAAAAGGGGGATTAACT-------------
3  CAGCT--TTCTA--AAT----GATAATAATTTTCAATACCGGAATGTATCCCTATGTTACAATCAGCTCAAGTTAGACTT
4  AA--C--GAT----AAT----GAAAATCATTTTCAATTAGGGAGGAAATACACA--------------------------
5  TA--T--ACAAT--AAT----GATAATCATTTTCAATGAGTAAGATTTTATGTTAATATAGCATCATAGAAAACAAAAAA
6  CC--T--AACGAC-AAT----GATAATCACTTTCAATTAGAAAGTCAATGTTATCTTTAAGTGTTCCACATACTTTCATT
7  CG--T--ACTTAATAAT----GATAATCATTTTCAATTGAGTCGAAAATAAACTAAGATATGAGGATTACGAT-------
8  AG--G--CGAAA--AAT----GATAATCATTTTCAATAAATGTGATTTAAATCATATTTTTAATATGAAAAATAGATTAA
9  GT--T--TTAAT--AAT----GATAATCATTTTCAGTTAGAAATGATTACTTCAATGTGGAAGGGGCCACCGGAT-----
10  TG--G--TTGAC--AAT----GATAATCATTATCAATTAAAATGATAGTTGACGTATGAATTTTACATAAACTTTTACTC
11  GA--A--TATGAT-AAT----GATAATCATTTTCAATTAGAAAGAGAGGTGGTTTGTGT---------------------
12  CA--T--TTTGA--AAT----GATAATGATTATCACTGTGTTTATTCTATTACTTTTCTTGTAAAATGTCAATAGTCCAT
13  AA--C--GAT----AAT----GAAAATCATTTTCAATTAGGGAGGAAATACACA--------------------------
14  TT--G--TTGAC--AAT----GATAATCATTATCAATTAAAATGATAATTAACGTATACTTTTACATAAACTTTTACTCC
15  CA--T--TATTA--AAT----GATAATACAATGATTGGCCAAACTACATTGTTTCAGTATTGCCTTTGTTTTAATTTTAA
16  AA--T--TTTGG--AATAATTGATAATCATTTTCAATAGGA--GGAAATT------------------------------
17  TA--TGTTATAC--AAT----GATAATCATTTTCAATT--ATAGGAGGAACATG--------------------------
18  CA--T--TATGA--AAT----GATTGAGACGCACAAACTTAATATTCAGGAGGA--------------------------
19  GA--A--TATGAT-AAT----GATAATCATTTTCAATTAGAAAGGAGGATGAATGGAAT---------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  TGAGTAATCACTTGTAAGAGTTGCTTAAGA--------------------------------------------------
4  --------------------------------------------------------------------------------
5  ACATTTGGAGGTTAAGT---------------------------------------------------------------
6  ATTGTTGGCAAACCGTCTATTCGAATCTTCCTTAATATATAATTAAGGAGACATTAAACACAATGATTGAAGATGTATAA
7  --------------------------------------------------------------------------------
8  AATTAAGGCATAAAATCTATTAGAAAAGTAAAGAATAAAAATAATTGAGTATTAACTTGAATTTTCTTAAGGAGGAATTT
9  --------------------------------------------------------------------------------
10  CACAAATGTCTGTGGGGGTTTTTTATAAATAGATGTTTTTTAATAAAGAAGGGAGAGTTAAGA-----------------
11  --------------------------------------------------------------------------------
12  TCTTTTTTAGTTATTATTTAATTTAAATGTATATATATAACTGTAAATTTACCACAAAATGTGATATATTGTAGTGAGTT
13  --------------------------------------------------------------------------------
14  ACTTGTGTTTGTGGGGGTTTTTTATAAATAGTAGTTTTTATTAAAGAAGGGAGATTTAAGA-------------------
15  ATCAAAATAGCCTATGAAAGATTTAAATCAATTAATTTCTATAATATTATCATTTTTAAAGCATATCATTGTTTAGTTTT
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------
19  --------------------------------------------------------------------------------

  
0  ____________________________________________________________________
1  --------------------------------------------------------------------
2  --------------------------------------------------------------------
3  --------------------------------------------------------------------
4  --------------------------------------------------------------------
5  --------------------------------------------------------------------
6  TCTTGTATAGGAGTCTTTTTT-----------------------------------------------
7  --------------------------------------------------------------------
8  AAAG----------------------------------------------------------------
9  --------------------------------------------------------------------
10  --------------------------------------------------------------------
11  --------------------------------------------------------------------
12  TATAATATTAACAAACAAAGGATGAATTTATTT-----------------------------------
13  --------------------------------------------------------------------
14  --------------------------------------------------------------------
15  TTTATAATTGGATAAATACTAATAGTTACTTTATAAAACATTACATAGAGAAAGGTTAAGGAGTGCAC
16  --------------------------------------------------------------------
17  --------------------------------------------------------------------
18  --------------------------------------------------------------------
19  --------------------------------------------------------------------