BLISSBreaker Lab Intergenic Sequence ServerHome


Intergenic view options: Interleaved


NC_000964.1 Bacillus subtilis (+ 626120 to 626337) circular

Islands  ACCA.A..A..GAGG..A.ACAAG.GA.AA.AGC.A...AA..GA..CG...CCG..GA.GAG.G.ACCACA..A.GAA.
5'-   ACCATATTATTGAGGTTATACAAGTGATAATAGCTATTTAATTGATTCGTTTCCGTTGATGAGTGTACCACATTATGAAT
  |         |         |         |         |         |         |         |         
  626120    626130    626140    626150    626160    626170    626180    626190    
  |         |         |         |         |         |         |         |         
3'-   TGGTATAATAACTCCAATATGTTCACTATTATCGATAAATTAACTAAGCAAAGGCAACTACTCACATGGTGTAATACTTA
Islands  .GG.A.AA.AAC.CCAA.A.G..CAC.A..A.CGA.,,,..AAC.AAGC,,,GGCAAC.AC.CACA.GG.G.AA.AC..A

 
Islands  GAA.C..CCA.AG,,,,,...A.,,,,CGG.GAACCGG,,,,,,,.A.GA..A.A...A....A.,,,,G.A.AGACA..
5'-   GAATCTTCCATAGAAAAATTTATAAAACGGTGAACCGGAAAAAAATATGATTATATTTATTTTATAAAAGTATAGACATT
  |         |         |         |         |         |         |         |         
  626200    626210    626220    626230    626240    626250    626260    626270    
  |         |         |         |         |         |         |         |         
3'-   CTTAGAAGGTATCTTTTTAAATATTTTGCCACTTGGCCTTTTTTTATACTAATATAAATAAAATATTTTCATATCTGTAA
Islands  C..AGAAGG.A.C.....,,,.A....GCCAC..GGCC.......A.AC.AA.A.,,,.,,,,.A....CA.A.C.G.,,

 
Islands  .,,,,..,,,.GAC.A.AA.AA.CAA.G.AAGCG....AA.AACAGGGGGGA.AGCAG
5'-   TAAAATTAAATGACTATAATAATCAATGTAAGCGTTTTAATAACAGGGGGGATAGCAG
  |         |         |         |         |         |       
  626280    626290    626300    626310    626320    626330    
  |         |         |         |         |         |       
3'-   ATTTTAATTTACTGATATTATTAGTTACATTCGCAAAATTATTGTCCCCCCTATCGTC
Islands  ,....AA...AC.GA.A..A..AG..ACA..CGC,,,,..A..G.CCCCCC.A.CG.C

IGR  +  626120  626337  ()  19  ydhM ydhN ydhO ydhP

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 + 626120 626337 ydhM ydhN ydhO ydhP [COG1440 COG1447 COG1455 COG2723]
1 Nostoc sp. PCC 7120 Cya NC_003272.1 - 5102369 5102572 asl4253 [-]
2 Streptococcus agalactiae B/C NC_004116.1 - 1162404 1162516 SAG1157 [-]
3 Clostridium perfringens B/C NC_003366.1 + 980882 981104 CPE0798 [-]
4 Clostridium perfringens B/C NC_003366.1 + 1092417 1092506 CPE0889 [-]
5 Listeria innocua Clip11262 B/C NC_003212.1 + 931388 931528 lin0900 [COG1455]
6 Clostridium tetani E88 B/C NC_004557.1 + 2554050 2554682 CTC02414 [COG4478]
7 Pyrococcus furiosus DSM 3638 A NC_003413.1 + 1030030 1030400 PF1080 PF1081 [- -]
8 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 - 2846856 2847003 CAC2721 CAC2720 [COG3707 COG3920]
9 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 - 2629283 2629485 CAC2520 [COG0655]
10 Listeria monocytogenes strain EGD B/C NC_003210.1 + 937595 937738 lmo0901 [COG1455]
11 Lactococcus lactis subsp. lactis B/C NC_002662.1 - 195620 195891 ybjK [COG1302]
12 Campylobacter jejuni P-e NC_002163.1 - 1589382 1589461 Cj1666c [COG3019]
13 Sulfolobus solfataricus A NC_002754.1 - 2927596 2927726 SSO3180 [COG0477]
14 Thermoplasma volcanium A NC_002689.2 - 910004 910395 TVN0875 [COG0656]
15 Staphylococcus aureus subsp. aureus N315 B/C NC_002745.1 - 2388020 2388178 hutU hutI [COG2987 COG1228]
16 Bacillus halodurans B/C NC_002570.1 - 4057081 4057880 BH3921 BH3920 BH3919 BH3918 BH3917 [COG1440 COG1447 COG1455 COG2723 COG2188]
17 Mycoplasma pulmonis B/C NC_002771.1 - 113139 113288 MYPU_1040 [COG0653]
18 Campylobacter jejuni P-e NC_002163.1 - 238752 238831 Cj0261c [COG0500]

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ATATGGTTCTCCTTAATAATTTCTTCTTAAGTTATATTTATAAAATTT--------------------------------
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ACCTCCTAAATCTATCCTTATAAATTTTTAACCCTTATTCTAATACTGCTAAAATATCATCTTGTCTTAATATTGTATAT
TCCTCTTTCACCGGGCGAAGAGTATGTAGAGTCGAATTTATAACTCTAACTAATTTCACAGTAGAATCTTAGAGAAGTCA
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10  --------------------------------------------------------------------------------
11  TTTTTGTTTTTTGC------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  AATTTTAGGACTACACGGAGAAGAGGAGGCTCTCTTGTGTAGTCTTTTTTAACGATATAATGTATCTGCATTGACAGTCA
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------

 
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TCTACATCATCTACTTTAACTTCATTACCTGCATATTTTGAAAACAGAACTCTGTCTCCTACTTTAACTTCCATTTTTAC
GCAGTAAATTTAACATCAGGGAAAC-------------------------------------------------------
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10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  ATTAGAGAGTCTCTGTAGACGGAAGGGAAGTCGAACAGGGGTTGATATTGTGAACACAAAGACGCGTATATTGTATAAAG
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------

 
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TTCTTTACCATCAACAATTCCTCCTGGTCCTACAGCTATTACCTCAGCTTCTTGAGGTTTTTCTTTTGCAGTTCCTGGTA
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10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  CAATTGAGCTGTTCAACGAGTTAGGTGCTAGAAAAGTATCGACAAACCATATTGCTGAAGCTTCTCTCCTTCCTTTTGTC
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------

 
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AAACTATTCCGCTTTTTGTAGTTTCTTCAATTTCAATTCCCTTAATAACAACTCTGTCTCCAAGTGGTCTAATATTCATT
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10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  TCCGTATCTTTCTTTTCAATAAAGTTCAGGAAACAAGCGGCCACTTTGTTCAAAATGGCCGCTTGTTTAATTTTGAGTAT
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------

 
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TAAACCCCTCCTTAATATATTTTAAAATATTAAAATTCTTCTCCTTCGATTATTAGCACTCACTCATATTGAGTGCTAAT
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10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  TTACTCTAAAATCAACACATTACTTCTACTGTAAAACCACCAGGAGCCTCAACATAAAATTAAGGTTTAAGTTTAACAAG
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------

 
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ACAA----------------------------------------------------------------------------
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10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  ACAACTTTGGCAGGAGATTTTTGCTTATGGCTCTCTTCGAATATAGTTCGTCATCATATTATTCATTGTTAGCATGATTC
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------

 
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10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  ACGTCTATTGGGCTTTTGGCGGTCGCTGGGGCATTTAACAACCTTTTTATGCAAATTAGTTAGCGGAACACCGAGACTTA
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------

 
__________________ACCATATTATTGAGGTTATACAAGTGATAATAGCTATTTAATTGATTCGTTTCCGTTGATGA
------------------CTATGATGAGTGCTAAATACGGAGAACTGAGAACTGAGTGCTGAGGACTGAGTAGTGTTAGC
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------------------TATGATGCTTGTACACAAAATTTAAAATTAATTATACATAGTTTATTTTAAAAAGAAACTAC
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------------------TTATTATGATAATTAATAGTATTTATAATATCAAGTTTAAAACCACAACTTATTTTGCATTA
------------------CTTCCAGATCTTGTTTGAGTGTTTTAACATTTCTGAAGAATTTTTTATTTTCATAATAAAAA
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10  --------------------------------------------------------------------------------
11  ------------------AAAACACAAAAATATCCTGTCATCTGACGGGGTTTTTTATTTACTGACAAGCTCTGTCAGTA
12  --------------------------------------------------------------------------------
13  ----------------------------------------------------------------------------AGAT
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  CCGAGCACGATGAAATAAATGGCGTTCTCCACATGAATTGAAAACCTTGGAGTGGGCACCAGCTGATGTCCCTTCGATTG
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------

 
GTGTACCACATTATGAATGAATCTTCCATAGAAAAATTTATAAA_AC_____GG___TGAACC__G_GAAAAAAATATG_
AAGGTGAGGCGTAAGCCCTTGCTGAGTAAAAATTCTAGCCTCTA-GC-----CT---CTAGCT--T-CTTGGCGATTTA-
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ACAAAAGTTACAAAAAATGAATTTTT-ATATAAAAATAAACAAT-AATATATGT---TGAATT--AAGATTATATTATG-
----------------------------TATAGTAATTTAAAAATAA-----AC---TAAAACTTG-TATTAAAACAGG-
----------------------------GTTTGAGGCTTTCATC-AA-----TA---TGATGG--A-AGCTTTTTTGTT-
ATTAATCATTACTCACAATTATATGATTATATCTAAGTTTCTTA-CT-----AT---GTTTCT--A-TGTTTTTCTATGT
CAATTATAATAATTTCCAGCTACAGTTAATTAATGTGTTTTAAG-CT-----CG---TCAAAA--T-ACTAAATTTAGG-
------GTAAGTATTAACAAATAT-CAATA---AAATTTGTAAA-AC-----ACCTATTATAA--T-TAATAAATTATT-
-AATATGAGGTGGCTTTAGCGAGAGAAGTTAAGGACACCTTTTT-GT-----TT---AAGATA--T-TAAAAGGTTTTT-
10  ---------------------------GAAGGAGACTTTCATTG-TG-----AT---GATGAA--A-GTCTTTTTTGTT-
11  AATAAAATTGTCACAACAAACTTTGTTAGCGCTGACAAATGGTA-AA-----TT---TCAAAA--A-GCAGTTCAAAAG-
12  ------------------------------------------AT-TC-----AT---TTTTAG--T-GTTAAAAATGTG-
13  TTTTAATTTTGCTTACTAATATTTAAGCAAAGAAGGGTACTATA-TA-----GA---TTCTAT--A-GTTGACAATA-G-
14  ---------------------------------------------------------------------AAATAATAAA-
15  ------------------GTGTTTTGCTCCTTTTATTTATAGGT-TC-----AA---GCTATG--G-ATAATTAGTTTA-
16  ATAAACTAGTTCATATTATATCGTCAAACAACTCCTATTCTCAT-GA-----TG---TTAGGA--T-GCAAAAGATACA-
17  -----------------------------------------------------------------A-GTTATCTTTTAC-
18  ---------------TTAATCATTCAAGCCCTTTCTTTGGGCTT-GA-----AT---TTTAAA--A-ATTTATGCTATG-

 
A_TTATAT_T______TA_TTTTAT___AAAAGTATAGA___CATTTA___A__A______ATTA__AAT_GACTAT___
A-ATATAT-T------TA-TTTTAT---AAAAATTCCTG---AGCATC---A--A------ACTT--TAG-GTAGAA---
-----TAT-T------TA-TTTTAT---AAAATTATTCATCTTATTTTTGCG--A------TTTC--AAT-AGTGAT---
A-CTATAT-T------TA-TTTTAT---AAGAATATTAT---TTGGAG---A--T------GTTA--AT-----------
T-TTTTGT-T------AAATTTTAT---AAATATATAGA---CATTTT---A--A------AGGA--GCG-ATTAA----
T-GGTCTT-T------TA-TTTTA----AAAAGACTAGA---CATTTA---A--A------AATA--AAT-GAGTAT---
A-TTTTAT-T------TA-TTTTAC---AAAA-TATATA---CATTTA---C--AAAGCTTATTA--ACA-TACCCT---
T-TTTTGT-TGTC---TA-TTTTATCCAAAAAGTATAGA---AATTTA---A--A------ATTG--AAT-AACATG---
AATTATAA-TAGGTGTTT-TTTGAT---AAAAGTATTGA---AATTCA---A--A------ATTATTTAT-GATTA----
A-TTATAT-T------TA-TATTAT---AATAGTA---A---CAATTA---G--G------AGAA--GATAGCCAAT---
10  C-GGTCTT-T------TA-TTTTA----AAAAGACTAGA---CATTTA---A--A------ATTA--AAT-GAGTAT---
11  A-GCTGTT-T------TA-TTTTAT---AAAAGTAT-GA-------TA---A--A------ATGAGCAAT-GA-TATTTA
12  A-TGATAT-T------AA-CTTTAT---AAAAGTATTAT---TATATA---T--T------TTTT--ACT-TAGGAT---
13  A-TTATAT-T------TA-TTTTAT---AG--GTAAAGT----ATATA---A--T------AGAA--GAA-GCCTAT---
14  A-AAATTTAT------TA-TTTTAT---AAAAG-ATAAA---CATTTA---ATGG------AAGG--AAT-TTCTAT---
15  T-TTATAT-T------TG-TTGGCT---ATA--TTTTAA---CATACT---A--T------AATG--AAT-ATTGAA---
16  A-ACATCA-T------TA-A---AT---AAAAGTATAGA---CATTTA---A--A------ATTA--ATT-GATTAT---
17  A-TTATAT-T------TA-TTTTTT---AAAA-TAT-GA---AATTAA---A--A------GTT-----T-TTCTAT---
18  A-TTTTAT-A------TA-TTTTAT---AAAGGAAAGTA---T-------------------------------------

 
A____ATAAT____CAAT_GTAAGCG_TTTTAATAACAGGGGGGATAGCAG_____________________________
T----TCCGC----AATT-GTCACCA-GGACAATTGG-------------------------------------------
ATGGTATATT----TAAA-GTAAGCT-ACGTATAGTTTTACCAGTCAGAAATAGTAAGGATGGTTGAGT-----------
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A----ATAAT----AAATAGAAAACG-TTTTCTTGTAGAAAAAAATACGTTTGGGGGAAGAAAA----------------
A----TACTT----TAAT-GTAACAA-ATATTTATTTAATTTTAGAGGTATTAATT------------------------
T----CATTG----ATAT-ATCCAAG-TAGTAAGATTTATAAATATAATTAGCGTAACCATATTATGAAAAGTTCACAAA
A----ATCAT-----AAT-ATATCAT-AGGGGGTGATTTTAAA-------------------------------------
G----AAAA-----CACC-ATAAAAA-TTTGGGACTTGTAATAGAAGCTAAAAAGATAAAGTAGTATAATTATGATAATA
10  A----ATAAT----AAATAGAAAACG-TTTTCTTTTTAGAAATATATCATGTTTGGGGGAAGTAAA--------------
11  A----ATAAT----ATGG-AGGAAAG-TGCCGTTTATCAGTCAATTTTTCTTTATTTACATAAATTTGTAAATTATTGAC
12  A----GCAAT----T-----------------------------------------------------------------
13  A----GAAGC----ATGA-AGGAGA-------------------------------------------------------
14  A----ATTAT----ATCT-GTAAAAG-ACACACTAAATTTAAATAATATTTTAAATTATACTGATTGCGATTTATATGAA
15  G----ATAAT-----AAT-GTAAGCG-TTTTAAATTTAGTGGAATTAACTTCTTAAAAGAACAGGAGCGAATTTT-----
16  A----ATTATAGGAGAGT-GAAAGCGCTTATCATAAAAAAGGAGCTGATTGTA---------------------------
17  A----TTCTA----AAAA-ATAGTTG-TTTTTAAGTTTTAAAGCTAGTTTTGCCTTAATTATTTAAGGCCTTTTTATGGG
18  --------------------------------------------------------------------------------

 
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AACTAAAGAGGGG-------------------------------------------------------------------
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TTTATATATAGGAGGTTTTAAC----------------------------------------------------------
10  --------------------------------------------------------------------------------
11  GACGGTACAGCT--------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  ATAATATCTGTTAGTAATAATAACAATTCAAATAAAAAGCATGAGACAAGGAAATATATATACGAATAACGTAAAATATG
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  ATATTTTGTAAAATAGTAAAAGAT--------------------------------------------------------
18  --------------------------------------------------------------------------------

 
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10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  ATTTTTATTGCTTTCGGATGTATTAGAAACAAATATGTTAGACCCCGGTGAGTGAATTTTATTGATAAAGCTGAAATATA
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------

 
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10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  TGGCACAGAGCCAATAATAGGGAAGCAATAAGAGATTATAAAAGGGATGATCTTTTTATAGCAGGCAAGGTATGGGCAAA
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------

 
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10  ----------------------
11  ----------------------
12  ----------------------
13  ----------------------
14  CCATTTCCGCTACGATGATTTG
15  ----------------------
16  ----------------------
17  ----------------------
18  ----------------------

Complementary Intergenic Regions

IGR  -   626120  626337  ()  9  ydhL