BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (+ 417294 to 417572) circular

Islands  G.CAGCC,,,CCC...C.,,,,,,,G.G.A..A.,,,,,.CA.A..C..A.A.AA.AC..G.G.CAA.A.AA...A.AC.
5'-   GTCAGCCAAACCCTTTCTAAAAAAAGTGTATTATAAAAATCATATTCTTATATAATACTTGTGTCAATATAATTTATACT
        |         |         |         |         |         |         |         |   
        417300    417310    417320    417330    417340    417350    417360    4173
        |         |         |         |         |         |         |         |   
3'-   CAGTCGGTTTGGGAAAGATTTTTTTCACATAATATTTTTAGTATAAGAATATATTATGAACACAGTTATATTAAATATGA
Islands  CAG.CGG...GGG,,,GA.......CACA.AA.A.....AG.A.AAGAA.A.A..A.GAACACAG..A.A..,,,.A.GA

  
Islands  CA...C,,,.AG..CCA.A..GG,,,,,..A.,,,.ACC.,,,,,.AG.GA...CC.CC.AA.....,,,C.....A.CG
5'-   CATTTCAAATAGTTCCATATTGGAAAAATTATAAATACCTAAAAATAGTGATTTCCTCCTAATTTTTAAACTTTTTATCG
        |         |         |         |         |         |         |         |   
  70    417380    417390    417400    417410    417420    417430    417440    4174
        |         |         |         |         |         |         |         |   
3'-   GTAAAGTTTATCAAGGTATAACCTTTTTAATATTTATGGATTTTTATCACTAAAGGAGGATTAAAAATTTGAAAAATAGC
Islands  G.,,,G...A.CAAGG.A.AACC.....AA.A...A.GGA.....A.CAC.,,,GGAGGA..,,,,,...G,,,,,.AGC

  
Islands  .GAGA....C..ACACAAC.A..CC...A.A.......AA.,,,,....AGAG,,,.G.ACAAGCAGA.CGGGCC...G.
5'-   TGAGATTTTCTTACACAACTATTCCTTTATATTTTTTTAATAAAATTTTAGAGAAATGTACAAGCAGATCGGGCCTTTGT
        |         |         |         |         |         |         |         |   
  50    417460    417470    417480    417490    417500    417510    417520    4175
        |         |         |         |         |         |         |         |   
3'-   ACTCTAAAAGAATGTGTTGATAAGGAAATATAAAAAAATTATTTTAAAATCTCTTTACATGTTCGTCTAGCCCGGAAACA
Islands  AC.C.,,,,GAA.G.G..GA.AAGG,,,.A.,,,,,,,..A....,,,,.C.C...ACA.G..CG.C.AGCCCGG,,,CA

  
Islands  GAG.AACA.GA.AG.AA.CA.AGAGAAGGAGGC.CGCAA
5'-   GAGTAACATGATAGTAATCATAGAGAAGGAGGCTCGCAA
        |         |         |         |  
  30    417540    417550    417560    417570    
        |         |         |         |  
3'-   CTCATTGTACTATCATTAGTATCTCTTCCTCCGAGCGTT
Islands  C.CA..G.AC.A.CA..AG.A.C.C..CC.CCGAGCG..

IGR  +  417294  417572  ()  11  yclG

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 + 417294 417572 yclG [-]
1 Staphylococcus epidermidis ATCC 12228 B/C NC_004461.1 + 2399982 2400355 SE2318 [COG0438]
2 Thermotoga maritima Th NC_000853.1 - 72093 72311 TM0070 [COG3693]
3 Streptococcus mutans UA159 B/C NC_004350.1 + 630587 630840 citB citZ idh [COG1048 COG0372 COG0538]
4 Pyrobaculum aerophilum A NC_003364.1 - 1351440 1351519 PAE2282 [COG1378]
5 Nostoc sp. PCC 7120 Cya NC_003272.1 - 3807859 3808409 all3145 [-]
6 Oceanobacillus iheyensis B/C NC_004193.1 - 1093780 1094301 OB1051 [COG3332]
7 Leptospira interrogans serovar lai str. 56601 chromosome I Sp NC_004342.1 - 1176820 1177139 LA1170 LA1169 [- -]
8 Borrelia burgdorferi Sp NC_001318.1 + 478075 478138 BB0458 BB0459 [- COG0457]
9 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 - 452985 453594 CAC0388 [-]
10 Streptococcus pyogenes B/C NC_002737.1 - 882232 882563 thdF [COG0486]

0  ________________________________________________________________________________
1  ACAAATTAAAACTGATAATTAAATTTTTTCAGAAAAAATAAGTTGCCAAACATTAAAATATATTCTTATGAGATGACTAG
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  CAGTATTACCTCCCTGAATTAATGCTTTGGTTATGGAGAATTAGTTTTTTGTTGCATTTATTTTTTTTCTTTTGGCGGTC
6  ATTCTTCTCCTCCTCAATATTCTCTAAGTGTCTATTTTCAGGTATAAGAACAAAAGCCCAAACGCCCGTTTATCACCGCA
7  TCTGATATACAATTAAAACGAGTTATTTCAAAAAACTGTAACCACTAAAAAAATCTATCTACAAATTTGAATAATACATA
8  --------------------------------------------------------------------------------
9  AGGGCCTATCCCTCCGTCACTCTTGATAAGAAACAATTATTTAGTTTTCGAACTTGTTTAATATGATTATTATATGTTCT
10  TAGTTTTACCTCCGTTTTTATTTTTGGGCTAGGTACAAAAAAAATCGCACCTAAACCTAGACACGAAAGTACAAATACGT

  
0  ________________________________________________________________________________
1  TTTTAAAAATATTGTTCTAATCATTTTTAAACTTTTTATCTTAAAGTAAGAGGTGGGGAGATGAATAGA-----------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  AGACAGAACGCCATCGCAGCACCATAAACACGATCAATACTGTTTATACTTCCCTGTGTGCTTAATAATTCCTTTGGGAT
6  TGTCCTGGACCGGGCTAAATAACTTTATAACTTAGTACGTTTTTTCCACAGCTTCAAAATTTAATAATATCCTGGAACAT
7  GATACATTCAAAAAAATTAATTTAATGTTAGCTTGATGTAAGAAACCCATGATTCTGAAAAAAATTGGAATGGGAACTCT
8  --------------------------------------------------------------------------------
9  ATTATTTTAATTGTCAAGAATATTTTTCTATGCTAGCTTATTAGCCACTCTAAATATTCCTTTAATGCAATGTTTTATGT
10  TATTTTCTTTAATCACGTTTTGTGCCTCGGCAGGAATATTATGAG-----------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  CACCATAGCAAAAAAAAATAGATTTTGGTTTCTCACACCATGTCTTCAAGATTCGTAAACAAACCAAAACTATTGTTCCA
6  AAAAAAACCCCTTCATCCCCATTCAATAAAAGGGACGAAAGAGTTTTCTTCCGCGGTACCACCACATCTTAGATGCAATG
7  ACAGATTAATTTTTTCAATGTAAGAACTACCCCCATTTCCATTTAGAATTTAGACAATTCTCTCTGGCCTGAGTTTGAGA
8  --------------------------------------------------------------------------------
9  TTTTAATTTATTTCGCTGATAATTTTAGTCGGTATATTTTTATTTGATAAAAGACGGATTGATTGGGGTTTATGATTCTA
10  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  GTATCCCCACAGATACTTATATTTTTGTAATAATCAAATCTCTTTCTTAAGTAAGTAGTCCGT-----------------
6  ATTTGCATCTCACTTCTACCATTAACGCTGGCTAAACGCCCATGTTTACATGGGACTCCAAAGGTAGGTTCTGATAAATC
7  AATCACATAG----------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  ATGGGCTCTGCCAAAACCTCTGGCCTAATTTATATGTTGTATTAGAGTTTATTAGCTTTGATAAAAGATGAGTTAATTTG
10  --------------------------------------------------------------------------------

  
0  _____________________________________________________________________________GTC
1  -----------------------------------------------------------------------------TTA
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  -----------------------------------------------------------------------------CAA
6  AGCAATGACGGAATCTCTCAGCTAATAAATTCCGATCTCTTTCATTCGATATCTACATACTATTCCTCTGTTAAACGTTC
7  -----------------------------------------------------------------------------ATT
8  --------------------------------------------------------------------------------
9  AGTTCATAATCCTAATGTACTTT------------------------------------------------------GTC
10  -----------------------------------------------------------------------------CAT

  
0  AGCCAAACCCT_TTCTAAAAAAAG__TGTATTATAAAAA_________TCATATTCTTATATAATACTTGTGTCAA____
1  AAAATTCTTCC-TCACCTCTTTTT--TATTTTAAACAAA---------TTAAACAATTATAAAATAGT-GTGACAAAGCA
2  --------------------------------------------------------------------------GA----
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  ACCACAAAACT-ATCTTAGTTAAG--AAAGATGAACTAA---------AATCCTCCCTCCTCATTCCTTCAGCATA----
6  AACTGTATTGT-TATATATTATTA--TCAGTTTCTCCTT---------AAATGTCAACAACTAAATTGTGTTTCAA----
7  ATCCAAAACAA-TTTTAGAACGTGGAAGTATTATAAAAA---------TCAAATTCTAAAAAAGATAAACGATTTC----
8  -------AATG-TTAGGCAGTTTT--TAGATTTTAAAAA---------TCATCTTATGATATAATA-TTGTATCAT----
9  ACCCT--CCCTATACTAACTTACA--TATCTTATTAATT---------TTATTTTCTTTGA-ACTATTTGAATTGA----
10  GCTCCCCTGCT-GTCTTAGGTCAG--TTTTTTATCAAAACCTATATCATTATATTCTTTTATAATACTATTGTCAA----

  
0  _TATAATTTATACTCATTTCAAATAGTT__CCA__TATTGGAAAAA________TTATAAATAC_CTAAAAATAGTGATT
1  TTGCATTTAATACTAAACACAAACACGG--TTA--TATAGTACAAA--------TTCTGAATAG-TTATTAAAATT----
2  -AAACTCACCTCCCTTGATTGTATGTTA--TAT--TTTTTCCTTTC--------GGGAAATATT-TTAATGTAAATCTCC
3  ----------------------------------------------------------------------------TTTT
4  --------------------------------------------------------------------------------
5  -ATTGGCTATTCCCGACTCCAAATTTTT--ATG--CTGTCCTACTT--------ATATCTTTGG-GTATTTGCTTCCAGA
6  -TCTGATTTTTAGTCAAATCAAATAGTT--CCA--TCTATAATATG--------GACTAGGAGG-TATCATT--------
7  -T------------------------------------------------------------------------------
8  -AAGGCAGT-----------------------------------------------------------------------
9  -TATTTTGAAGTTTTAATACCTATTATTAGCCT--TAGCACAAAACATTTTTCTTTATAAATAC-CTATATGTAGTGCTT
10  -TAAAAACTATTAAAAAATGATTTTTTT--ACATTTATTTTTTTAG--------TATTAGCTAAACTCAAAATGGTGCTA

  
0  TCCTCCTAATTTT___TAAACTTTTTATCGTGAG__ATTTTC___TTACACAACTAT_TCCTTT_ATATTT_TTTTAATA
1  --CTTGTAATTTTCATAAAAATGTTTATCATAAGTAATTAACAATTTATACAACTTA-TC--TA-ATAATT-TAAGTTTG
2  GAGAAAATCAAGG---TGCGTTTTTTTGGGATAA--TGGAGG---TTATCTGCACTT-GTAAAA-GATTAT-TTCAAAAT
3  TCCTCCTAAATTT---TTAACTTTTATAAGTT-G--CTTTAT---TAGCATATCTAA-AAATAA-GAAAAA-AAGCAAGG
4  --------------------------------GC--ACCCGT---TGTCACATCAAT-T--TTT-AAACTT-TTTAACTA
5  ACCAGCAGTTGTT---TAAACTTTTTATCTTGAA--ATTTAT---TTAATAAATTATCTCCGACGAAAGTT-TATATATA
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  GACTCCTAAATTT---TCTACCTTT-------AT--AATATG---TTTTAAATGTAA-ACTTTA-ATATTAGTTATAATA
10  G--TCCTATTTTC---TATACAAATAACACCTTG--CTTTCT---ACTAGGACTTGA-TTTAAA-ATAGAG-GGC-----

  
0  AAATTTTAGAGAAATGTACAAGCAGATCGGGCCTTTGTGAGTA__ACATGATAGT__AATCATAGAGAAGGAGGCTCGCA
1  AAATAAAGGAGAATTAATT-------------------------------------------------------------
2  ATTGTCGTTTTTCTTCTTTTTTCTCTTTTTTCCTTTCTG-GTATTATATTTTCGTTAAATCATAGAGAAGGAGGTTTCAT
3  GAAGTTACTCAAAAAAACACAAAATATAGTACCGAAGTTTTTT--AATTCCCACA--AGATATAGTGTTAGTCTCAGTTA
4  AATTCTGAGAAAAAAGTTAAAAATTGCGCTTAAGGCAGACGT--------------------------------------
5  ACCACAGTTACGGATATCATATATGACGTAGAAGGAGATATTA--G----------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  A--TTTTAAATAATTATATTATAATATAAACAAGTTTTTACAA--TTAACAAAGG--ATGTGTAATTTA-----------
10  --------------------------------------------------------------------------------

  
0  A_______________________________________________________________________________
1  --------------------------------------------------------------------------------
2  GTT-----------------------------------------------------------------------------
3  TCTATTTTTATGTTATAAAACATAACATAAAATGCAAGTTTTTCCTTGTTTAATCATTCAAATAATTGTATAATTTTAAT
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------

  
0  __________________________
1  --------------------------
2  --------------------------
3  TAATATAAGAAAAAAGGAGACTGGTT
4  --------------------------
5  --------------------------
6  --------------------------
7  --------------------------
8  --------------------------
9  --------------------------
10  --------------------------

Complementary Intergenic Regions

IGR  -   417294  417572  ()  15  yclF