BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (- 417294 to 417572) circular

Islands  ..GCGAGCC.CC..C.C.A.GA..AC.A.CA.G..AC.CAC,,,GGCCCGA.C.GC..G.ACA...C.C.,,,,....A.
5'-   TTGCGAGCCTCCTTCTCTATGATTACTATCATGTTACTCACAAAGGCCCGATCTGCTTGTACATTTCTCTAAAATTTTAT
    |         |         |         |         |         |         |         |       
    417570    417560    417550    417540    417530    417520    417510    417500  
    |         |         |         |         |         |         |         |       
3'-   AACGCTCGGAGGAAGAGATACTAATGATAGTACAATGAGTGTTTCCGGGCTAGACGAACATGTAAAGAGATTTTAAAATA
Islands  AACGC.CGGAGGAAGAGA.AC.AA.GA.AG.ACAA.GAG.G...CCGGGC.AGACGAACA.G.,,,GAGA....,,,,.A

  
Islands  .,,,,,,,.A.,,,GGAA.AG..G.G.AAG,,,,.C.CACGA.,,,,,G...,,,,,..AGGAGG,,,.CAC.A.....A
5'-   TAAAAAAATATAAAGGAATAGTTGTGTAAGAAAATCTCACGATAAAAAGTTTAAAAATTAGGAGGAAATCACTATTTTTA
    |         |         |         |         |         |         |         |       
    417490    417480    417470    417460    417450    417440    417430    417420  
    |         |         |         |         |         |         |         |       
3'-   ATTTTTTTATATTTCCTTATCAACACATTCTTTTAGAGTGCTATTTTTCAAATTTTTAATCCTCCTTTAGTGATAAAAAT
Islands  A.......A.A...CC..A.CAACACA..C....AGAG.GC.A.....C,,,.....AA.CC.CC...AG.GA.,,,,,.

  
Islands  GG.A...A.AA.....CCAA.A.GGAAC.A...G,,,.GAG.A.,,,..A.A..GACACAAG.A..A.A.AAGAA.A.GA
5'-   GGTATTTATAATTTTTCCAATATGGAACTATTTGAAATGAGTATAAATTATATTGACACAAGTATTATATAAGAATATGA
    |         |         |         |         |         |         |         |       
    417410    417400    417390    417380    417370    417360    417350    417340  
    |         |         |         |         |         |         |         |       
3'-   CCATAAATATTAAAAAGGTTATACCTTGATAAACTTTACTCATATTTAATATAACTGTGTTCATAATATATTCTTATACT
Islands  CCA.,,,.A..,,,,,GG..A.ACC..GA.,,,C...AC.CA.A...AA.A.AAC.G.G..CA.AA.A.A..C..A.AC.

  
Islands  .....A.AA.ACAC.......AG,,,GGG...GGC.GAC
5'-   TTTTTATAATACACTTTTTTTAGAAAGGGTTTGGCTGAC
    |         |         |         |      
    417330    417320    417310    417300    
    |         |         |         |      
3'-   AAAAATATTATGTGAAAAAAATCTTTCCCAAACCGACTG
Islands  ,,,,,.A..A.G.G,,,,,,,.C...CCC,,,CCGAC.G

IGR  -   417294  417572  ()  15  yclF

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 - 417294 417572 yclF [COG3104]
1 Leptospira interrogans serovar lai str. 56601 chromosome I Sp NC_004342.1 + 1773554 1773865 LA1779 [-]
2 Oceanobacillus iheyensis B/C NC_004193.1 + 1093780 1094301 proB proA [COG0263 COG0014]
3 Streptococcus mutans UA159 B/C NC_004350.1 - 630587 630840 SMU.669c [COG0695]
4 Thermotoga maritima Th NC_000853.1 + 72093 72311 TM0071 [COG0747]
5 Clostridium perfringens B/C NC_003366.1 + 958523 958699 CPE0775 [COG2846]
6 Nostoc sp. PCC 7120 Cya NC_003272.1 + 3807859 3808409 alr3146 [COG0574]
7 Listeria innocua Clip11262 B/C NC_003212.1 - 2646859 2647066 lin2630 [COG3595]
8 Pyrobaculum aerophilum A NC_003364.1 + 1351440 1351519 PAE2284 [COG1964]
9 Clostridium perfringens B/C NC_003366.1 - 1798807 1799317 CPE1535 [-]
10 Methanococcus jannaschii A NC_000909.1 + 643450 643993 MJ0711 [-]
11 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 + 452985 453594 CAC0389 CAC0390 CAC0391 [- COG0626 COG0626]
12 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 - 3894904 3895056 CAC3688 [COG0840]
13 Streptococcus pyogenes B/C NC_002737.1 + 882232 882563 rplJ [COG0244]
14 Borrelia burgdorferi Sp NC_001318.1 - 478075 478138 BB0457 [COG0322]

0  ________________________________________________________________________________
1  ACGTGAGTTACATATTTACGTTTCTATTTGTAAAGGATGTATGGGTACTCTCATGAACAAATGTTCATTTTTGAGACATA
2  --------------------------------------------------------------------------------
3  AACCAGTCTCCTTTTTTCTTATATTAATTAAAATTATACAATTATTTGAATGATTAAACAAGGAAAAACTTGCATTTTAT
4  AA------------------------------------------------------------------------------
5  TTTAAGATTATATTTCGGTTGAATGTTGAT--------------------------------------------------
6  --------------------------------------------------------------------------------
7  ATCTAAATCCCGCTTATATTTTAATAAGCGGGATTTTTTTCTTGTGCCGAAGA---------------------------
8  --------------------------------------------------------------------------------
9  TTATTTAATGTGAGAAAGATAAATTTTATTATATTAGTATTGAGCTTAATTTTATAGTAATAAAAATTTATACTTTAAAA
10  TTTTTATTATTTTAGAAAATAACATTTATATATTCAAATCTTAAAGTTAAGCGGGTAAGGGGGCTGGTGACTTTCCCCTC
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  GGAACGA-------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  GTTATGTTTTATAACATAAAAATAG-------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  GATTATATGATTTGTAAAGTTTTAATTTTTAGGGAAGGGGTACACCCTTTAAATTAAATATAATAAGTTT----------
10  TTTAAGAGGGGAGGAAGTTCCGCCCACCCCATTTATGGGCAGCGTCCCCTGAGAAGGGGCGGGAGATGCAGCAGAAACGA
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  CACGGCTCCGGAAGAGATGACGATGATAGTGAAAGTTGAGGACTTCCGGAGAACCGGTGAAACGGGCATCTCCCCTGCCC
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  GGGGTGCAAGCCGGTTTCGGCGCTTAGCCGAATGTCACCGAAATTACAGAAGGCGGGCTATAGCCCCCATACCCGCACTA
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------

  
0  _______________________________________________________________________TTGCGAGCC
1  -----------------------------------------------------------------------TTATCGGAA
2  --------------------------------------------------------------------------------
3  -----------------------------------------------------------------------ATAACTGAG
4  -----------------------------------------------------------------------CATGAAACC
5  -----------------------------------------------------------------------TTTAGCTGG
6  --------------------------------------------------------------------------------
7  -----------------------------------------------------------------------CCAAACCAC
8  --------------------------------------------------------------------------------
9  -----------------------------------------------------------------------GCTATCATA
10  TTTTTTATAGAATTTTCGCAGTTTTATATTAACTTCGTGGAATTTAGATGCTCAAAGGGCATCAATTTTCTCTAAAATTT
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------

  
0  TCCTTCTCTATGATT__ACTATCATGT__TACTCACAAAGGCCCGATCTGCTTGTACATTTCTCTAAAATT_TTAT_TA_
1  GTTGATTGTTATATC--ACAGAAGAAT--TGACTCCGAACTGTTTTAAAAAATCATCCATCGGTCTCGTTG-AACC-GC-
2  --------------------------------------------------------------------------------
3  ACTAACACTATATCT--TGTGGGAATT--AAAAAACTTCGGTACTATATTTTGTGTTTTTTTGAGTAACTT-CCCT-TG-
4  TCCTTCTCTATGATTTAACGAAAATATAATAC-CAGAAAGGAAAAAAGAGAAAAAAGAAGAAAAACGACAA-TATT-TT-
5  TTCTTTAGATGAAAT--TTAGTTTATT--AAAGTATTTTTATTACTTTATTATTAAGATTAACTTAAAGTT-CTATGTA-
6  --------------------------C--TAATATCTCCTTCTACGTCATATATGATATCCGTAACTGTGG-TTAT-AT-
7  CCAAAGTCTAAACAA--ATAATCATCC--TCTGGTTGTATGACAGAAATTATTTTTTCCTTCATAATAGAG-TCAT-AG-
8  ------------------------------ACGTCTGCCTTAAGCGCAATTTTTAACTTTTTTCTCAGAAT-TTAG-TT-
9  TTAAGAATTAAGAAA--TAAATTTGTT--TAAAAATTACATAGATTAGGAATTTTTATAATCTATGTAATT-TTTT-TAT
10  TATTCCTGCAAAAGT--TCTATATTTT--TTTAATTATTAATCAATGAACTTAAATTAATAAATATAAATT-ATTT-TA-
11  ---TAAATTACACAT--CCTTTGTTAA--TTGTAAAAACTTGTTTATATTATAATATAATTATTTAAAATTATTAT----
12  AATTAGGGACATGAG--TAATAAGAGG--GGTGAAAACGTTGACAAATAACGACAAAAATTTTGTTAAGTT-AAGC-CA-
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------

  
0  ______AAAA__AATATAA__A_GGA____ATAGTTGTGTAAGAA__AATCTCACGATAAA______AA___G____TTT
1  ------ACTC--TAACTCT--A-TTT----TCTAAACTTTTGGGA--TTGATCGATTCCAG------AG---T----TTT
2  --------------------------------------------------------------------------------
3  ------CTTT--TTTTCTT--A-TTT----TTAGATATGCTAATA--AAGCAACTTATAAA------A----G----TTA
4  ------GAAA--TAATCTT--T-TAC----AAGTGCAGATAACCT--CCATTATCCCAAAA------AA---A----CGC
5  ------AAAATCAACACTAGCA-AAA----ATAGTT-TGTTATAA--A-TGTGT------------------G----ATT
6  ------ATAA--ACTTTCG--TCGGAG---ATAATTTATTAAATA--AATTTCAAGATAAA------AA---G----TTT
7  ------ATAA--AACAGAT--A-G-A----TTACTTGCACATGAAGCAAGCCTAAAATAGCT-----AA---A----CCG
8  ------AAAA--AGTTTAA--A---A----ATTGATGTGACAACG--GGTGC----------------------------
9  ATAAGCAAAA--AATACAA--G-GAA----TTAGCAAATTAATAT--TAATAAAATATAAAT-----AA---G----TTA
10  ------TCTA--AAT-TAA--A-GGTTTTTATATATCAAAAAGTA--AAATTAAATTTAAA------AAAGAG----ATT
11  ------AACT--AATATTA--A-AGT----TTACATTTAAAACAT--ATTAT-------AA------AG---G----TAG
12  ------AGTA--ATTAAAA--T-GTA----TTAGTTATTTTATAT--AAAAG-ACGATAAATCTCCTAT---GGGCAATT
13  ------GCCC--TCTATTT--T-AAA----TCAAGTCCTAGTAGA--AAGCAAGGTGTTAT------TT---G----TAT
14  --------------------------------------------------------------------------------

  
0  AAAAATTAGGAGGAAATCACTATTTTTAGGT_ATTTATAAT________TTTTCCAATA__TGG__AACTATTTGAAATG
1  ATGATATTCGTATATTCTGTTATTTTTAGGT-ATTTATACG--------ACGTTCGGAG--ATT--AATAGTTATACGAA
2  ----------------------AATGATACC-TCCTAGTCC--------ATATTATAGA--TGG--AACTATTTGATTTG
3  AAAATTTAGGAGGAAAAA--------------------------------------------------------------
4  ACCTTGATTTTCTCGGAGATTTACATTAAAA-TATTTCCCG--------AAAGGAAAAA--ATA--TAACATACAATCAA
5  AAAAATTAGGAGGAAAGCACT-----------------------------------------------------------
6  AAACAACTGCTGGTTCTGGAAGCAAATACCC-AAAGATATA--------AGTAGGACAG--CAT--AAAAATTTGGAGTC
7  AAAAATTAGGAGGAAATGAAA-----------------------------------------------------------
8  --------------------------------------------------------------------------------
9  ACAAATTGTTAATAAA-----ATGTAGTGGT-ATTTTAAAT--------CTTTATTTT---TCT--AAGACTTTGATTGT
10  AAAAATTGGGAGAAA-----------------------------------------------------------------
11  AAAATTTAGGAGTCAAGCACTACATATAGGT-ATTTATAAAGAAAAATGTTTTGTGCTA--AGGCTAATAATAGGTATTA
12  AAAAATTAGGAGGAAAAATAC-----------------------------------------------------------
13  AGAAAATAGGACTAG--CACCATTTTGAGTTTAGCTAATAC--------TAAAAAAATAAATGT--AAAAAAATCATTTT
14  --------------------------------------------------------------------------------

  
0  AGTATAAATTATATTGACACAAGTATTATATAAGAATAT_________GATT____TTTATAATACACTTTTTTTAG_AA
1  ATGCACTTAACTGAATTGGAGAAATT------------------------------------------------------
2  ACTAAAAATCAGATTGAAACACAATTTAGTTGTTGACAT---------TTAA----GGAGAAACTGATAATAATATA-TA
3  --------------------------------------------------------------------------------
4  GGGAGGTGAGTTTTC-----------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  GGGAATAGCCAATTATGCTGAAGGAATGAGGAGGGAGGA---------TTTT----AGTTCATCTTTCTTAACTAAG-AT
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  ACTATTATTTAAATTTATAATATTAGATGAAAAGAATAT---------TAGCAAAATTTATTATAGA-----TTTAA-AA
10  --------------------------------------------------------------------------------
11  AAACTTCAAAATATCAATTCAAATAGTTCA-AAGAAAAT---------AAAA----TTAATAAGATATGTAAGTTAGTAT
12  --------------------------------------------------------------------------------
13  TTAATAGTTTTTATTGACAATAGTATTATAAAAGAATATAATGATATAGGTT----TTGATAAAAAACTGACCTAAG-AC
14  -----ACTGCCTTATGATACAA-TATTATATCATAAGAT---------GATT----TTTAAAATCTAAAAACTGCCT-AA

  
0  AGGGTTTGGCTGAC__________________________________________________________________
1  --------------------------------------------------------------------------------
2  ACAATACAGTTGAACGTTTAACAGAGGAATAGTATGTAGATATCGAATGAAAGAGATCGGAATTTATTAGCTGAGAGATT
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  AGTTTTGTGGTTTGACGGACTACTTACTTAAGAAAGAGATTTGATTATTACAAAAATATAAGTATCTGTGGGGATACTGG
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  ATAATTTGTCCTAAGAAGTGAAATATTTCTTCTCCCTTTCATATCACTTTTTAGGACAGATTTTTGAAAACTTTAAAAAT
10  --------------------------------------------------------------------------------
11  AGGGA--GGGTGACAAAGTACATTAGGATTATGAACTCAAATTAACTCATCTTTTATCAAAGCTAATAAACTCTAATACA
12  --------------------------------------------------------------------------------
13  AGCAGGGGAGCATGCTCATAATATTCCTGCCGAGGCACAAAACGTGATTAAAGAAAATAACGTATTTGTACTTTCGTGTC
14  CATT----------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  CCGTCATTGCTGATTTATCAGAACCTACCTTTGGAGTCCCATGTAAACATGGGCGTTTAGCCAGCGTTAATGGTAGAAGT
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  AACAATAGTTTTGGTTTGTTTACGAATCTTGAAGACATGGTGTGAGAAACCAAAATCTATTTTTTTTTGCTATGGTGATC
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  TAGGAGGTTTTTAAA-----------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  ACATATAAATTAGGCCAGAGGTTTTGGCAGAGCCCATTAGAATCATAAACCCCAATCAATCCGTCTTTTATCAAATAAAA
12  --------------------------------------------------------------------------------
13  TAGGTTTAGGTGCGATTTTTTTTGTACCTAGCCCAAAAATAAAAACGGAGGTAAAACTA---------------------
14  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  GAGATGCAAATCATTGCATCTAAGATGTGGTGGTACCGCGGAAGAAAACTCTTTCGTCCCTTTTATTGAATGGGGATGAA
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  CCAAAGGAATTATTAAGCACACAGGGAAGTATAAACAGTATTGATCGTGTTTATGGTGCTGCGATGGCGTTCTGTCTGAC
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  ATATACCGACTAAAATTATCAGCGAAATAAATTAAAAACATAAAACATTGCATTAAAGGAATATTTAGAGTGGCTAATAA
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  GGGGTTTTTTTATGTTCCAGGATATTATTAAATTTTGAAGCTGTGGAAAAAACGTACTAAGTTATAAAGTTATTTAGCCC
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  CGCCAAAAGAAAAAAAATAAATGCAACAAAAAACTAATTCTCCATAACCAAAGCATTAATTCAGGGAGGTAATACTG---
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  GCTAGCATAGAAAAATATTCTTGACAATTAAAATAATAGAACATATAATAATCATATTAAACAAGTTCGAAAACTAAATA
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  GGTCCAGGACATGCGGTGATAAACGGGCGTTTGGGCTTTTGTTCTTATACCTGAAAATAGACACTTAGAGAATATTGAGG
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  ATTGTTTCTTATCAAGAGTGACGGAGGGATAGGCCCT-------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------

  
0  ___________
1  -----------
2  AGGAGAAGAAT
3  -----------
4  -----------
5  -----------
6  -----------
7  -----------
8  -----------
9  -----------
10  -----------
11  -----------
12  -----------
13  -----------
14  -----------

Complementary Intergenic Regions

IGR  +  417294  417572  ()  11  yclG