BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (+ 4112430 to 4112624) circular

Islands  CC,,,.CGCC.C...C,,,,CA.GA..CAC..AACC.A..GA.C.CCAA.G.ACCA.AA..GA.C.GG,,,.ACA.ACCA
5'-   CCAAATCGCCTCTTTCAAAACATGATTCACTTAACCTATTGATCTCCAATGTACCATAATTGATCTGGAAATACATACCA
  |         |         |         |         |         |         |         |         
  4112430   4112440   4112450   4112460   4112470   4112480   4112490   4112500   
  |         |         |         |         |         |         |         |         
3'-   GGTTTAGCGGAGAAAGTTTTGTACTAAGTGAATTGGATAACTAGAGGTTACATGGTATTAACTAGACCTTTATGTATGGT
Islands  GG...AGCGGAG,,,G....G.AC.AAG.GAA..GGA.AAC.AGAGG..ACA.GG.A..AAC.AGACC...A.G.A.GG.

  
Islands  .GCAA.A.GG.,,,,,...,,,.,,,,,..AG,,,.G,,,G.G...GCA.,,,,G,,,.A..CACG..A.CA.AC..G.A
5'-   TGCAATATGGTAAAAATTTAAATAAAAATTAGAAATGAAAGTGTTTGCATAAAAGAAATATTCACGTTATCATACTTGTA
  |         |         |         |         |         |         |         |         
  4112510   4112520   4112530   4112540   4112550   4112560   4112570   4112580   
  |         |         |         |         |         |         |         |         
3'-   ACGTTATACCATTTTTAAATTTATTTTTAATCTTTACTTTCACAAACGTATTTTCTTTATAAGTGCAATAGTATGAACAT
Islands  ACG..A.ACCA.....,,,...A.....AA.C...AC...CAC,,,CG.A....C...A.AAG.GCAA.AG.A.GAACA.

  
Islands  .ACAAG.A.AC.CC..GAG.GAGGAAGG.GAG.G.
5'-   TACAAGTATACTCCTTGAGTGAGGAAGGTGAGTGT
  |         |         |         |    
  4112590   4112600   4112610   4112620   
  |         |         |         |    
3'-   ATGTTCATATGAGGAACTCACTCCTTCCACTCACA
Islands  A.G..CA.A.GAGGAAC.CAC.CC..CCAC.CACA

IGR  +  4112430  4112624  ()  18  gntR gntK gntP gntZ

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 + 4112430 4112624 gntR gntK gntP gntZ [COG1802 COG1070 COG2610 COG0362]
1 Oceanobacillus iheyensis B/C NC_004193.1 + 2463663 2463825 OB2410 [COG1272]
2 Clostridium tetani E88 B/C NC_004557.1 + 1925313 1925664 CTC01813 [COG0697]
3 Staphylococcus epidermidis ATCC 12228 B/C NC_004461.1 - 2090831 2091198 SE2046 SE2045 [COG1802 COG1070]
4 Streptococcus mutans UA159 B/C NC_004350.1 - 1236597 1236642 asnS [COG0017]
5 Streptococcus mutans UA159 B/C NC_004350.1 - 1071928 1072327 SMU.1131c [-]
6 Oceanobacillus iheyensis B/C NC_004193.1 - 3321421 3321741 gntR gntK [COG1802 COG1070]
7 Oceanobacillus iheyensis B/C NC_004193.1 + 3321421 3321741 OB3191 OB3192 [- COG3764]
8 Staphylococcus aureus subsp. aureus N315 B/C NC_002745.1 - 2767750 2768597 SA2457 SA2456 SA2455 [COG3944 COG0489 COG4464]
9 Agrobacterium tumefaciens str. C58 (U. Washington) chromosome linear P-a NC_003305.1 + 582307 582457 Atu3533 [COG1879]
10 Buchnera aphidicola str. Sg (Schizaphis graminum) P-g NC_004061.1 - 193913 193962 nrdB [COG0208]
11 Campylobacter jejuni P-e NC_002163.1 + 1002443 1002566 pgsA Cj1068 Cj1069 [COG0558 COG0750 COG2990]
12 Campylobacter jejuni P-e NC_002163.1 - 1470383 1470519 acs [COG0365]
13 Lactococcus lactis subsp. lactis B/C NC_002662.1 + 972184 972336 yjhC [COG3830]
14 Campylobacter jejuni P-e NC_002163.1 + 213452 213539 Cj0229 [COG0663]
15 Borrelia burgdorferi plasmid lp36 Sp NC_001855.1 + 34080 34231 BBK51 [-]
16 Bacillus subtilis B/C NC_000964.1 - 4112430 4112624 yxaA [COG1929]
17 Staphylococcus aureus subsp. aureus N315 B/C NC_002745.1 - 2578032 2578183 gntR gntK [COG1802 COG1070]

0  ________________________________________________________________________________
1  TATTATTCTCCTCGTTTTGATTTGA-------------------------------------------------------
2  --------------------------------------------------------------------------------
3  GTTATAACCTCCTAATCGTATGATGATGTATAAAACTGAAAAATAATTACGAGTAAATTTTAAGTATCCAAGTAAGCGTT
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  CTTTTCTCCTCTTTTCAGTAAAATGACAAGCTCAATGAGAAAATTATATCCTGCGCCTTGTAAACTAGCAATCTATTTTT
7  --------------------------------------------------------------------------------
8  TTTTTGTTACTAGTTTGTAATAATTAACTTACTTTTGTAAAAAAAGACATGAGATTATTTTTTTAAATCTATATAAAGTT
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  TATATTACCTCTATCTAAAATAGAATATTATTAGAATAT-----------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  GTCAATATAATTATATTTTTTTATGAAATACAAAATATATAATTGAATAATAAGAAACAAACAATAAGTAAG--------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  TGGTAATATATGCATAATTCGTGCGACATGATATGACAAAAGGATCAA--------------------------------
7  --------------------------------------------------------------------------------
8  GACAATACAAATCGATATTGAGAATATTAAGATGTATATGAATTTTATAAATTAAATGCAATACATTAATATAAATATCA
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  ATTGTTGCAAAATACGATTTGTTCAATGATTTTATAATATTATTCTTTATATTTGTGAATGGTTAAGTTTGTCTTTGAAC
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------

  
0  _________________________________________________________________CCAAATCGCCTCTTT
1  -----------------------------------------------------------------TACATATTATACTTT
2  --------------------------------------------------------------------------------
3  -----------------------------------------------------------------TATGATTTAAGTGTA
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  -----------------------------------------------------------------TTTTAACTTCAAATC
7  --------------------------------------------------------------------------------
8  ATATTATAAAAGTGTAATGTTCCCCTGAAAAGAATAAGTTGTCATCTAATTACAGGAAATCCGCATAAATTAGATGAAAT
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  ---------------------------------------------------------------------GATAAGCTGAT
14  --------------------------------------------------------------------------------
15  -----------------------------------------------------------------TTTATCATTATATCA
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------

  
0  CAAAACATGAT___TCACTTAAC_CTATTGAT___C___TCCAA__TGTACCA_TAATTGAT__C_TGGAAATACAT__A
1  CAAAACATGAT---TCTGTAAA---TGTTGAC--------------TATATCA-T-------------GAAACACATGTA
2  AAAAACTTGGTAGATTATTCTAA-CAATTTAT---T---GACAT--TGTT--A-TTTTT-AT--A-TTGTAAAATTT--A
3  TTTTACATTAT---TTTATAAACTCTATTGAT---AGGATGGAAAGTGAACGAATAAAAGATGGA-TGTAAATG-AT--T
4  --------------------------------------------------------------------------------
5  -------------------------------------------------------------------TTAAGAAAAT--A
6  AAGAATCCTAT---TAAGAAACG-TGGGAATG---A---ATAGT--ATGAATT-CGCAAGCC--G-AATCTTATTTC--T
7  --------------------------------------------------------------------------------
8  GGAAAGTAATA---AGTAATAAT-TTATTGATAAGC---GCCTA--TGTG--A-TGGTAAAT--C-ATGACATAGGC--G
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  TATAGCAAAAA---CTAGCCAAT-AAATCATG---A---ATGAT--TTTGACT-GACAGAGC--T-GTCAGCAAAAG--T
14  --------------------------------------------------------------------------------
15  CATATATAGTA---GCAATCAAG-ATTATGAG---C---TAGAT--GTTAAGA-TAGAT-AT--CATAAAACTAAAT--A
16  --------------------------------------------------------------------------------
17  --------------------------ATCATT---C---GTGTG--ATAGTGA-TCATTCCC--T-TTAAATTTACA--T

  
0  CCAT_GCA__ATA___TGGTAAAAA_____TTTAAAT___AAAA_ATTA_GAAATGAA_____AGTGTTTG_C_ATAA__
1  TTATCGTT--ATA---TAGTT---------TTTAAAA---CTAC-ATAACGAAATGAA-----GGTGTTTTTC-ATAATG
2  --AT-T----ATA---TTGTAAACA-----TTTAAAT---AAAA-ATGT-ATTCTAGT-----TGAAGAGT-A-TAAG--
3  CTAA-GAA--ATAGTTTGTTAAATTGTGTTTTAAAATGTCAAAA-CACC-TAAAAGAA-----AGCGCTTG-C-A-AA--
4  --AA-AAA--CAA---GTTATCCAA-----CTTAAAT---AAAA-ATTA-GAAAAGAG-----ATTATT-----------
5  GATT-TAC--ATG---ACTTAAAAA-----GTTAAAT---AATA-ATTT-GAAATGAAGATTTAGT-TTTG-T-ATGG--
6  CATA-AAA--AAT---AGAATTTTC-----CTTTATT---AAAT-CCAA-CTAATTCA-----AGCGTTTA-C-AAAC--
7  ----------------------------------------------------------------------A-A-ATTC--
8  CTTT-TTTTTATA---AGTTAAAAA-----TGTAAAT---AAAA-ATTA-TATAAATT-----ACCCACAT-C-TTTT--
9  --------------------------------------------------GAACGCTC-----CCCTTCAA-A-AGGC--
10  ----------TAA---TGATATAAA-----TTTAATT---AAAA-ATTA-AAAATTTT-----TCGGATAT-A-ACAT--
11  ATTT-TGC--TTT---TAAGCAAAA-----TTTAAAT---AAAA-ATAA---ACTGAT-----TCTTTTTT-G-TATT--
12  -CAT-ACA--TTA---T----AAAA-----TTTAAAT---AAAATATTA-CAAATATT-----CCCATTTT-TTATAA--
13  TTAT-TTT--ACT---GACAAGAAA-----ATTGAAT---GAAA-ATTT--AAATAAA-----AATGTTAT-A-ATAG--
14  -----TAC--TTC---TCCTATAAA-----TTTAAAT---AAAA-ATTG-TAACTAAA-----AAAGTTGA-A-ATAG--
15  ACAT-AGA--ATA---AG-----AA-----TTTAAAT---AAAA-ATTA-GAATGAG-----------------------
16  ---------------------------------------------------------------------AC-A-CTCA--
17  CGAA-GAG--GGG---TGGTCACTA-----TTTTAGT---TCGC-AT-----AAAGAA-----AGCGCTTG-C-AAAC--

  
0  AAGAAATATTC_ACG__TTATC_ATACTTGTAT_____ACAAGTATACTCCTTGAGTGAGGAAGGTGAGTGT________
1  AATAACTATAT-TAG--AGAAC-CG-------------------------------------------------------
2  AGAGATCCTAT-TTT--AAAGG-ACGCCGAAGG-----GACAATCTATGTTTATCCCAATAAAACATAGAGAAATTCTCA
3  ACGAATTTTTGTATA--TTAAC-ATACTTGTAT-----ACAAGTAGAAGTGCATTGAATTGAGGTGGATAGAAC------
4  --------------------------------------------------------------------------------
5  AAACAGGATTA-A------ATC-TTTTTTGTTT-----TATCAAAAGCCTGTAGGCATACCCACTACAGATACTAAAGTG
6  AAAAAA-ACAG-ATG--TTAGT-ATACTTGTAT-----ACAAGTATTCATCATGTC-GAGGACGGTGAATTT--------
7  ACCGTCCTCGA-CAT--GATGA-ATACTTGTAT-----ACAAGTATACTAACATCTGTTTTTTTGTTTGTAAACGCTTGA
8  TAAAAGGTGTG-GGC--TTTAT-TATCATTAAC-----CCAACTCACAGTGACGGGTTAGGCAAGGTATTGAATTACCGA
9  CGCCGTGAAAA-TCT--CATTG-CTACTTGGAT-----ACAAGTATACTAGTGTCCATAGTGCTTACGCAAGTCGGCTGT
10  AA------------------------------------------------------------------------------
11  TTTACTAAGTC-TTT--GCTTA-AATTTTATAC-----AATTTTGATTATAATTTTACATTTAATTTCACAAGGCTTGTT
12  AATTTATCTTA-ATTATTTTTT-AAATTTGTATTTAATACAAATAAACTCTTATATAATGTTTAAAAACAACCATAAAGG
13  GATAAAAATTT-GAA--TGGAG-AAACAAA--------------------------------------------------
14  AG------TTA-AAC--TTAGCTATACTTAAAT-----AAAAAGGAAAAAA-----------------------------
15  --------------------------------------------------------------------------------
16  CCTTCCTCACT-CAA--GGAGT-ATACTTGTAT-----ACAAGTATGATAACGTGAATATTTCTTTTATGCAAACACTTT
17  ACTTAAGAACT-ATA--TTAAC-ATACTTGTAT-----ACAAGTATG-TCATGTAATGAAGGAGTGCTTTG---------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  GGCAAAAGAATTATACTTTGATAGACTCTGGAAAGTAAACAGAGAGAGAGCGAACGTGGGGTTTGTTCTCTCTTTATTTT
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  TCTGAATGTCTTAAATAGTAATATTCAATGCTACTTTAGAGATTATGCCAATGAGTCTCTTCCATGACAGCAAATTCTTT
6  --------------------------------------------------------------------------------
7  ATTAGTTGGATTTAATAAAGGAAAATTCTATTTTTTATGAGAAATAAGATTCGGCTTGCGAATTCATACTATTCATTCCC
8  GTACGGGCACGCTCGGTGTTGTAAAGAGCAAATAATCAAGTAATGATGATGCTTCTACTCGATTATAAGAAAGCCATGAT
9  TGGGAGAAAGAGCGATTAAGGGAGGGTTCCAGTCGCTTTTTGTGGATGCAGGCCGTTTC---------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  AGTTTTT-------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  CATTTCTAATTTTTATTTAAATTTTTACCATATTGCATGGTATGTATTTCCAGATCAATTATGGTACATTGGAGATCAAT
17  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  TTTAACAGAGAGGACAAACCTTGGGGTTTGTTCTCTTTTTATTTTTAATCAGATTGATATGACAATATTTTAGAAGGGAG
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  ATTAAGTCTCTTTTAAGCATGGTTAGTTAGACTAAGCATATCCTATAAGAAAGACGAGGTCTATCATATGAAAAAAATAG
6  --------------------------------------------------------------------------------
7  ACGTTTCTTAATAGGATTCTTGATTTGAAGTTAAAATTGATCCTTTTGTCATATCATGTCGCACGAATTATGCATATATT
8  AGAGTACGATGGTATCTAGTTTTATTATTAATAGGTTTGGATATTTGAAGTTGGACAATATTATATCTTGTACAAAAATA
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  AGGTTAAGTGAATCATGTTTTGAAAGAGGCGATTTGG-------------------------------------------
17  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  ATTCTTTT------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  TAATTAACCCCATTTTTCTGTCATTGGCAACAAAAGCTGTATTAACCAGTTTAATTATTATTGTTGCAAAGGGATAATAA
6  --------------------------------------------------------------------------------
7  ACCAAAAAATAGATTGCTAGTTTACAAGGCGCAGGATATAATTTTCTCATTGAGCTTGTCATTTTACTGAAAAGAGGAGA
8  TAAATAAGTTATACATAACGGTAGAGAATCATGATATAATTTTAAACGATAAAATATTTATATAAATAATTAGAGAAAAT
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  TCTAGTGTTTAGAAAGGCCAATT---------------------------------------------------------
6  --------------------------------------------------------------------------------
7  AAAG----------------------------------------------------------------------------
8  GTAGTTGTGTATGTTTTGTGGTCGTTAAACTAGATATAATTGTCCGATTTATAAAACATACATAATGAATACAATGATTG
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------

  
0  _________________
1  -----------------
2  -----------------
3  -----------------
4  -----------------
5  -----------------
6  -----------------
7  -----------------
8  ATTATGTGGAGGAAACC
9  -----------------
10  -----------------
11  -----------------
12  -----------------
13  -----------------
14  -----------------
15  -----------------
16  -----------------
17  -----------------

Complementary Intergenic Regions

IGR  -   4112430  4112624  ()  14  yxaA