BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (- 4112430 to 4112624) circular

Islands  ACAC.CACC..CC.CAC.CAAGGAG.A.AC..G.A.ACAAG.A.GA.AACG.GAA.A...C....A.GC,,,CAC...CA
5'-   ACACTCACCTTCCTCACTCAAGGAGTATACTTGTATACAAGTATGATAACGTGAATATTTCTTTTATGCAAACACTTTCA
      |         |         |         |         |         |         |         |     
      4112620   4112610   4112600   4112590   4112580   4112570   4112560   411255
      |         |         |         |         |         |         |         |     
3'-   TGTGAGTGGAAGGAGTGAGTTCCTCATATGAACATATGTTCATACTATTGCACTTATAAAGAAAATACGTTTGTGAAAGT
Islands  .G.GAG.GGAAGGAG.GAG..CC.CA.A.GAACA.A.G..CA.AC.A..GCAC..A.,,,G,,,,.ACG...G.G,,,G.

  
Islands  ...C.AA.....A...,,,.....ACCA.A..GCA.GG.A.G.A...CCAGA.CAA..A.GG.ACA..GGAGA.CAA.AG
5'-   TTTCTAATTTTTATTTAAATTTTTACCATATTGCATGGTATGTATTTCCAGATCAATTATGGTACATTGGAGATCAATAG
      |         |         |         |         |         |         |         |     
  0   4112540   4112530   4112520   4112510   4112500   4112490   4112480   411247
      |         |         |         |         |         |         |         |     
3'-   AAAGATTAAAAATAAATTTAAAAATGGTATAACGTACCATACATAAAGGTCTAGTTAATACCATGTAACCTCTAGTTATC
Islands  ,,,GA..,,,,,.,,,...,,,,,.GG.A.AACG.ACCA.ACA.,,,GG.C.AG..AA.ACCA.G.AACC.C.AG..A.C

  
Islands  G..AAG.GAA.CA.G....G,,,GAGGCGA...GG
5'-   GTTAAGTGAATCATGTTTTGAAAGAGGCGATTTGG
      |         |         |         |
  0   4112460   4112450   4112440   4112430   
      |         |         |         |
3'-   CAATTCACTTAGTACAAAACTTTCTCCGCTAAACC
Islands  CAA..CAC..AG.AC,,,,C...C.CCGC.,,,CC

IGR  -   4112430  4112624  ()  14  yxaA

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 - 4112430 4112624 yxaA [COG1929]
1 Oceanobacillus iheyensis B/C NC_004193.1 + 3321421 3321741 OB3191 OB3192 [- COG3764]
2 Agrobacterium tumefaciens str. C58 (U. Washington) chromosome linear P-a NC_003305.1 - 582307 582457 Atu3532 fabG uxuB uxuA Atu3528 Atu3527 [COG1802 COG1028 COG0246 COG1312 COG0667 COG3618]
3 Staphylococcus epidermidis ATCC 12228 B/C NC_004461.1 + 2090831 2091198 SE2047 [COG2271]
4 Oceanobacillus iheyensis B/C NC_004193.1 - 3321421 3321741 gntR gntK [COG1802 COG1070]
5 Methanobacterium thermoautotrophicum str. Delta H A NC_000916.1 - 95603 95739 MTH144 [-]
6 Buchnera sp. APS P-g NC_002528.1 + 294172 294208 lipB [COG0321]
7 Staphylococcus aureus subsp. aureus N315 B/C NC_002745.1 - 2578032 2578183 gntR gntK [COG1802 COG1070]
8 Staphylococcus aureus subsp. aureus N315 B/C NC_002745.1 - 278681 278877 SA0229 [COG0747]
9 Oceanobacillus iheyensis B/C NC_004193.1 - 2463663 2463825 OB2409 OB2408 [- COG2141]
10 Oceanobacillus iheyensis B/C NC_004193.1 - 2934188 2934309 OB2849 [COG1404]
11 Methanococcus jannaschii A NC_000909.1 - 397691 397733 MJ0443 MJ0442 [COG1094 COG0378]
12 Borrelia burgdorferi plasmid lp36 Sp NC_001855.1 - 34080 34231 BBK50 [-]
13 Bacillus subtilis B/C NC_000964.1 + 4112430 4112624 gntR gntK gntP gntZ [COG1802 COG1070 COG2610 COG0362]

0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  GAAACGGCCTGCATCCACAAAAAGCGACTGGAACCCTCCCTTAATCGCTCTTTCTCCCAACAGCCGA-------------
3  GT------------------------------------------------------------------------------
4  CTTTTCTCCTCTTTTCAGTAAAATGACAAGCTCAATGAGAAAATTATATCCTGCGCCTTGTAAACTAGCAATCTATTTTT
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  ATCATTCGTGTGATAGTGATCATTCCCTTTAAATTTACATCGAAGAGGGGTGGTCACTATTTTAGTTCGCATAAAGAAAG
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  CCAAATCGCCTCTTTCAAAACATGATTCACTTAACCTATTGATCTCCAATGTACCATAATTGATCTGGAAATACATACCA

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  TGGTAATATATGCATAATTCGTGCGACATGATATGACAAAAGGATCAATTTTAACTTCAAATCAAGAATCCTATTAAGAA
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  CGCT----------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  TGCAATATGGTAAAAATTTAAATAAAAATTAGAAATGAAAGTGTT-----------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  ACGTGGGAATGAATAGTATGAATTCGCAAGCCGAATCTTATTTCTCATAAAAAATAGAATTTTCCTTTATTAAATCCAAC
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ____________ACACTCACCTTCCTCACTCAAGGAGTATACTTGTATACAAGTATGAT_AACGTG_AATATTTCTT__T
1  ------------AAATTCACCGTCCTCGA-CATGATGAATACTTGTATACAAGTATACT-AACATC-TGTTTTTTTG--T
2  ------------CTTGCGTAAGCACTATGGACACTAGTATACTTGTATCCAAGTAGCAA-TGAGAT-TTTCACGGCG--G
3  ------------TCTATCCACCTCAATTCAATGCACTTCTACTTGTATACAAGTATGTT-AATATACAAAAATTCGT--T
4  TAATTCAAGCGTTTACAAACAAAAAAACAGATGTTAGTATACTTGTATACAAGTATTCA-TCATGT-CGAGGACGGT--G
5  -------------------------------------------------------GTTC-ATGGGA-AGAATTCAGT--A
6  --------------------------------------------------------------------------------
7  ------------TGCAAACACTTAAGAACTATATTAACATACTTGTATACAAGTATGTC-ATGTAA-TGAAGGAGTG--C
8  ------------------------------------------------TTATATATGTTTATCGTG-AATCACTATA--A
9  ------------------------------------------------------CGGTT-CTCTAA-TATAGTTATTCAT
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  ------------TGCATAAAAGAAATATTCACGTTATCATACTTGTATACAAGTATACT-CCTTGA-GTGAGGAAGG--T

  
0  TATGCAAA_CACTTTCATTTC_TAATTTT___T___ATTTAAAT______TTTTACCA__TATTG_C_ATGGTA__TGTA
1  T-TGTAAA-CGCTTGAATTAG-TTGGATT---T---AATAAAGG------AAAATTCT--ATTTT-T-TATGAG--AAAT
2  CCTTTTGA-AGGGGAGCGTTC-----------------------------------------------------------
3  T-TGCAAG-CGCTTTCTTTTA-GGTGTTT---TGACATTTTAAAACACAATTTAACAAACTATTT-C-TTAGAA--TC-A
4  AATTT---------------------------------------------------------------------------
5  AAGGGGGC-CAGAAAGATTTC-ATATTTT---A---ATTTAAAT------TTTTA--A--TATTGGC-TTGATG--TGAA
6  -------------------TC-TATTTTTTTAT---ATTTAAAT------TTTTACCG--GATGA-T-TC----------
7  TTTG----------------------------------------------------------------------------
8  -ATGTCGC-TAACTTCATTTC-TAATATT---T---ATTTTTAA------AA--AGCA--TAATT-A-CTACAA--T-TA
9  TATGAAAAACACCTTCATTTCGTTATGTA---G---TTTTAAAA----------ACTA--TATAA-CGATAATACATGTG
10  ---------TTTCATCCTAAC-TATTTTT---T---ATTTAAAT------TTTCAAAA--AATAGTC-ATCTTG--TCTG
11  ---ATTAG-AATTCTTATTTC-TAATTTT---T---ATTTTATA------TGGTTTTT--AT------------------
12  --------------CTCATTC-TAATTTT---T---ATTTAAAT------TCTTA-------TTC-T-ATGTTA--TTTA
13  GAGTGT--------------------------------------------------------------------------

  
0  _TTTCCAG__ATCAATTA_T__GG_T_ACA_T_TGGAG___ATCAA__TAG_GTTAAGTGAATCATGTTTTGAAAGAGGC
1  -AAGATTC--GGCTTGCG-A--AT-T-CAT-A-CTATT---CATTC--CCA-CGTTTCTTAATAGGATTCTTGATTTGAA
2  --------------------------------------------------------------------------------
3  -TTTACATCCATCTTTTA-TTCGT-TCACT-T-TCCATCCTATCAA--TAGAGTTTATAAAATAATGTAAAATACACTTA
4  --------------------------------------------------------------------------------
5  -AATAAA---ATCGTATA-A--CT-T-ATA-TATTATG---ATAAA--GAG-AGTATAGAAAAACTCCTGTGG-------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  -ATTGAAC--TTTAATAA-T--TACT-AAACT-TGAAC---AACATTTTAC-TTTAACAAAATAAAGTTTTAAAATATTA
9  -TTTCATG--AT-----A-T--AG-T-----------------CAA--CA---TTTACAGAATCATGTTTTGAAAGTATA
10  -ATTGTT----TCTACTACT--TG-T-CC--T-TGATA---ATCTA--TTA-GTGAACAAAATAAAACTAATCGAGGAGG
11  --------------------------------------------------------------------------------
12  GTTTTATG--AT-ATCTA-T--CT-T-AAC-A-TCTAG---CTCAT--AAT-CTTGATTGCTACTATATATGTGATATAA
13  --------------------------------------------------------------------------------

  
0  GATTTGG_________________________________________________________________________
1  GTTAAAATTGATCCTTTTGTCATATCATGTCGCACGAATTATGCATATATTACCAAAAAATAGATTGCTAGTTTACAAGG
2  --------------------------------------------------------------------------------
3  AATCATACTTACTTATTGTTTGTTTCTTATTATTCAATTATATATTTTGTATTTCATAAAAAAATATAATTATATTGACA
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  ATTGTTGGGTTTTACATAGTAATTAGAAAGAGAGTGTTAATGAA------------------------------------
9  ATATGTATCAAATCAAAACGAGGAGAATAATA------------------------------------------------
10  AGTAGAA-------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  TGATAAAATATTCTAATAATATTCTATTTTAGATAGAGGTAATATA----------------------------------
13  --------------------------------------------------------------------------------

  
0  _______________________________________________________________________________
1  CGCAGGATATAATTTTCTCATTGAGCTTGTCATTTTACTGAAAAGAGGAGAAAAG------------------------
2  -------------------------------------------------------------------------------
3  ACGCTTACTTGGATACTTAAAATTTACTCGTAATTATTTTTCAGTTTTATACATCATCATACGATTAGGAGGTTATAAC
4  -------------------------------------------------------------------------------
5  -------------------------------------------------------------------------------
6  -------------------------------------------------------------------------------
7  -------------------------------------------------------------------------------
8  -------------------------------------------------------------------------------
9  -------------------------------------------------------------------------------
10  -------------------------------------------------------------------------------
11  -------------------------------------------------------------------------------
12  -------------------------------------------------------------------------------
13  -------------------------------------------------------------------------------

Complementary Intergenic Regions

IGR  +  4112430  4112624  ()  18  gntR gntK gntP gntZ