BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (- 4065795 to 4065971) circular

Islands  CAAGAACCC.CCCAC.A.G.A.C.CAA.AGA..AG.AA.GA..A.CA..A.CAA..AA.AA.A.AGCAAG,,,CC.G..C
5'-   CAAGAACCCTCCCACTATGTATCTCAATAGATTAGTAATGATTATCATTATCAATTAATAATATAGCAAGAAACCTGTTC
   |         |         |         |         |         |         |         |        
   4065970   4065960   4065950   4065940   4065930   4065920   4065910   4065900  
   |         |         |         |         |         |         |         |        
3'-   GTTCTTGGGAGGGTGATACATAGAGTTATCTAATCATTACTAATAGTAATAGTTAATTATTATATCGTTCTTTGGACAAG
Islands  G..C..GGGAGGG.GA.ACA.AGAG..A.C.AA.CA..AC.AA.AG.AA.AG..AA..A..A.A.CG..C...GGACAAG

  
Term (1.91)%  ---------------------GGGAGAAAGTTTTTCCC------------------------------------------
Islands  .CCG.C.A.CAC.A.....AAGGGAG,,,G.....CCCG...A.GGG.GACGCGG.G.GCC.AA.CGA..A..A.AGG.,
5'-   TCCGTCTATCACTATTTTTAAGGGAGAAAGTTTTTCCCGTTTATGGGTGACGCGGTGTGCCTAATCGATTATTATAGGTA
   |         |         |         |         |         |         |         |        
   4065890   4065880   4065870   4065860   4065850   4065840   4065830   4065820  
   |         |         |         |         |         |         |         |        
3'-   AGGCAGATAGTGATAAAAATTCCCTCTTTCAAAAAGGGCAAATACCCACTGCGCCACACGGATTAGCTAATAATATCCAT
Islands  AGGCAGA.AG.GA.,,,,,..CCC.C...C,,,,,GGGC,,,.ACCCAC.GCGCCACACGGA..AGC.AA.AA.A.CCA.

  
Islands  ,,.AGGAGGAG,,,,,.
5'-   AATAGGAGGAGAAAAAT
   |         |     
   4065810   4065800   
   |         |     
3'-   TTATCCTCCTCTTTTTA
Islands  ..A.CC.CC.C.....A

IGR  -   4065795  4065971  ()  17  yxeC

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 - 4065795 4065971 yxeC [-]
1 Clostridium perfringens B/C NC_003366.1 - 2419485 2419684 CPE2108 CPE2107 [- -]
2 Staphylococcus epidermidis ATCC 12228 B/C NC_004461.1 + 1831172 1831273 SE1772 SE1773 [COG4264 -]
3 Oceanobacillus iheyensis B/C NC_004193.1 + 3528921 3529098 OB3391 [COG1794]
4 Streptococcus agalactiae B/C NC_004116.1 - 2070576 2070674 SAG2087 [-]
5 Oceanobacillus iheyensis B/C NC_004193.1 + 574964 575176 OB0542 [COG4607]
6 Staphylococcus aureus subsp. aureus N315 B/C NC_002745.1 - 1107828 1108035 SA0977 [-]
7 Listeria monocytogenes strain EGD B/C NC_003210.1 - 2274751 2274960 lmo2186 lmo2185 [- -]
8 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 + 1130745 1130949 CAC0983 [-]
9 Listeria monocytogenes strain EGD B/C NC_003210.1 - 389718 389812 lmo0362 lmo0361 [COG1826 COG0805]
10 Listeria innocua Clip11262 B/C NC_003212.1 - 2320693 2320907 lin2290 lin2289 [- -]
11 Bacillus subtilis B/C NC_000964.1 - 3291354 3291546 dhbA dhbC dhbE dhbB dhbF [COG1028 COG1169 COG1021 COG1535|COG3433 COG1020]
12 Pasteurella multocida P-g NC_002663.1 + 1830094 1830251 hasR [COG1629]
13 Bacillus halodurans B/C NC_002570.1 - 1516314 1516984 BH1427 [COG3666]
14 Bacillus halodurans B/C NC_002570.1 - 2743862 2744382 BH2624 ddc BH2622 BH2621 BH2620 BH2619 BH2618 [COG0160 COG0076 COG4264 COG1670 COG3486 COG0477 COG4264]
15 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 + 3621845 3622061 CAC3433 [COG1309]
16 Bacillus subtilis B/C NC_000964.1 - 431568 431951 yclM [COG0527]

0  ________________________________________________________________________________
1  AAATTATGAATAAGCGTAGATTAGTAATAGTGCTAATTTACGCTTATTTTTTTGTTTATTAACATATAATTTCTAATAAG
2  --------------------------------------------------------------------------------
3  CTGTC---------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  AACATCGTACCTAGAGATAAGTATTTAAGATTGAGCTTTTCTCTAGGTTTTTTATAAGTCAATAAATAATAATTGTGACA
6  AACATAATCCTCCTTTTTAT------------------------------------------------------------
7  TAGGAAATAATTATTATCCATGGATAGGAGTTGCTATTCATGGTTTTTTTG-----------------------------
8  --------------------------------------------------------------------------------
9  CGTTAATAGAAAAACAGAT-------------------------------------------------------------
10  AACAGTAAATATTTATTAATCCGTGGACAAACGTTGCCGTCCATGGATTTTTTT--------------------------
11  GACATACTCAGCCTTGCCTTTAAAAAAATATTTGTCACTGAAATTATATTTGACTGT-----------------------
12  TCAATGAGCTAATTTTTATCTAAACCGCACATCATGTGCGGTTTTTTTATAAATAAATTGAATGTTATTTATTCA-----
13  --------------------------------------------------------------------------------
14  GCTTTATAAAAGAACAGCCCCCTTATCCTAGCATTCGTTAGGATAAGGGGGCTGTTTGTGTTCCCTTTCTTTAAAAGGGG
15  AAAC----------------------------------------------------------------------------
16  GCTGCCTCCTTACATCCTTACAGCAAAAAGAACGTATCTCCT--------------------------------------

  
0  ________________________________________________________________________________
1  TTAA----------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  AAAAGTTAAAATAATATTACAAAGAAGTAATAATTATATTGACGGGA---------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  ACAAAGGAGAAGAACGTGCTTCTCGCATAAAGGTTTGGATAAAGGATGGCAAGCGATAGGTAAAACGATTTATAAGAAAG
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  GTTGTATTTCGCACCTTTAGGATGAACTGATGCGTTTACATGCTAGGAAAACGGATTTGGGACTGTCCTGACGTGTAGCC
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  TAATTATGAAAGGAAATGTGACAATTGTCAGGGGGATCTGTTTTTTCTCCAAATGCTGAGAATTTTTTAAGTGTCGAAGT
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  AGGGAGAGTTGCAAATAACTAGGAGGTTTTCTGCAACTATTGCTCCCTATTCTATAAAGAAATATAGGTTTATTTTCATA
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------

  
0  ______________________________CAAGAACCCTCC_CACTATG__TATCTCAATAGAT__TAGTAAT_GATTA
1  ------------------------------AAAACTTGACAT-ATTTTTG--AAGTGTAATATAA--TATTAAT-GAAAA
2  ---------------------------------------CAA-ATTCCAC--CTGTCTTTTTCAT--TGATAAT-AATTA
3  ------------------------------CTAATTCCCCCC-TACTTTT--CATCTAAATAA-------TAAT-GATAA
4  --------------------------------------------------------------------------------
5  ------------------------------GTTCTAAAGGCG-ATTATAC--TAAGTGTAGTTAT--TGATAAT-GATTA
6  ------------------------------GATTGCTTTTAA-GTCTTTA--GTAAAATCATAAA--TAATAAT-GATTA
7  ------------------------------AGTATTTAATTA-GTAAAAA--AATAATCTGTTGT--TGACAAT-GATAA
8  --------------------------------AGAACTCAACTCCCTTTT--AATATGTATAGATAATAGCAAT-GAATA
9  ------------------------------TGACATCCGATA-GGTTTCG--ATTTAGAATTAAC--TGATAAT-GATTA
10  ------------------------------GTTGTGAAGGCT-GTTGAAA--AATAAAATGTGGT--TGACAAT-GATAA
11  ------------------------------CACATGACATTT-GGATATGATTATTTTTATA-AT--TGATAAT-GATAA
12  ------------------------------CCTCTTGCATTT-CTCTTCA--GATATGGTTAGAT--CGTTAAT-GATTT
13  -----------------------------------CCTCTTT-CGCCCCT--TTTAACAAACGAT--GA-TATT-GATTA
14  TTTATTGGAAACATCATTGACGATGATTATCATTATCAATTA-AAGTATG--TATGTGAGTTG------GTAAT-GATAA
15  ------------------------------CACTCCTTACTT-CTTAAAT--CTTATACGTCAAG--TACAAAT-GATTA
16  ------------------------------ACTCCGCAAGGA-CTCAAAA--CAATATGGCCATA--TAGTAATTGATTA

  
0  TCATTATCAAT_____TA_A_T_AATATAGCA_AGAAACCTGTTCTCCGTCTATCAC_TATTTTTAAG_GGAGAAAGTTT
1  TCATTATCAAT-----TA-GGT-AAAATTAAA-TTAGGGGGGAACAAATTAATTTTA-TAAAAATTTT-AAGGGGGATAA
2  TCATTATCA-T-----TA-A-T-A-TGGATTATACAAATGTTATTTATTTTTGTAAAATATTTTTTAGAGGTGAATT---
3  TCATTATCAAT------A-A-C-ACTACTTCA-C-AATCTTAAACTT-GTCAA--AG-TATTTTTAAT-TAGGTAGCTTT
4  --------------------------------------------------------------------------------
5  TCATTATCAAT-----AA-AAT-AATACATAC-ATAGAGGAGAGAAGTAC------------------------------
6  TCATTGTCAAT-----AT-T-T-ATTTTATAA-TCAATTTATTATTGTTATACGGAA-ATAGATGTGC-TAGTATAATTG
7  TCATTATCAAT-----TA-A-A-ATGATAATT-AACGTATACTTTTACATAAACTTT-TACTCCACTT-GTGTTTGTGGG
8  TCATTTTCAAT-----TA-AAT-AGTATCATT-TAATCAGATTGATGTCAACTGGCG-GCTACTCAAC-AAAAACAAGAG
9  TCATTTTCATT-----TA-A-AGAATGGAGGA-AATCGAA----------------------------------------
10  TCATTATCAAT-----TA-A-A-ATGATAGTT-GACGTATGAATTTTACATAAACTT-TTACTCCACA-AATGTCTGTGG
11  TCATTATCAAT-----AG-A-T-TGCGTTTTT-CAAGGCGCAGCAGTCTTTTTCGCT-GGATGTCTGT-TTGGCATTTAG
12  TCATTATCATC-----TA-A-T-AAAATGTAA-TTTCATGGAGAACTT--------------------------------
13  TCATTATCAAT-----TA-A-T-TGTAACTGA-TTTTTTTACGGCTAGCAACTCAAA-ACGTTTCTGC-CGCAAAAGATA
14  TCATTATCACTAGGTTTA-T-C-AACATAGCA-TGATATAAAGGGGTGTACGCAA-------------------------
15  TCATTATCACT-----TA-A-A-TAGATGATT-TATATGGTTTTGTAGGTTATCATA-CATACCACAT-TAAAAATGTAC
16  TCATTATCATT-----TACA-T-ATTACCATT-TTTATAGGGTTAGTCAATATTCTT-TAAAAATATT-AACCTAGTCAT

  
0  TTCCCGTTTATGGGTGACGCGGTGTGCCTAATCGATTATTA_TAGGTAAATAGGAGGAGAAAAAT_______________
1  AC------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  AGAAGGAAGGATAGAAATCTGATTTTTGAAAAATATAATTA-CCAAGCTGCTTCTCTGAGGAGGGAAAAGA---------
4  ---------------------GGTTTTCTGATATACTGGTAGTATGTAAATATGAGGAGAAAAATAGTGGTAGAAAACCT
5  --------------------------------------------------------------------------------
6  ATAACCATTATCAATTGCAATGGTTAATCATCTCATATAAC-AACACATAATTTGTATCCTTAGGAGGAAAACAAC----
7  GGTTTTTTATAAATAGTAGTTTTTATTAAAGAAGGGAGATT-TAAGA---------------------------------
8  TTTTTATAATTGATGTTAATATTTATGTTGAATTATGATAT-AATACATATGAGATAGGTAACTATACATAAATTCGAAG
9  --------------------------------------------------------------------------------
10  GGGTTTTTTATAAATAGATGTTTTTTAATAAAGAAGGGAGA-GTTAAGA-------------------------------
11  AGCGAAGAAAGGAATTGATGAT----------------------------------------------------------
12  --------------------------------------------------------------------------------
13  AGATTTGCGCAAAAATACCGAATGGTGACGAGGAGGACATC-TTAAAAGTGGACATCGGCCTGTGCTGAATCTTATAACA
14  --------------------------------------------------------------------------------
15  GATAACCTGCTTTTTAATACATATTGACTGCTAATAACTAT-CCTTTTATAGTATAATTATTAAGAATATTATCTTGGGG
16  TTATCAATTTTACTAATCATTCTAACCATTTTCCATCCCAA-AACGTTAGGCTGTTTACCATATTTATCTTTATAACGCA

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  AGAAAAACCAATTGGAGTGAGCTATAAAAATAGCCCATCA----------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  GGGGAATTTAT---------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  ACACCATAAAAAAATGAGGAGCTGTCTCAAAAGTCTATCTTTTGAGGCAACTTCTTTACTTATTCGTTCAAAATGACGAC
14  --------------------------------------------------------------------------------
15  GGGGGATTTTTCGTGGCAAAA-----------------------------------------------------------
16  GGCATACGGTCAGCAAACCTAACATTATTCCTCGTGAAAAATACAAATGTTCTCCTGAGAAAGAAATTCCCCCTTGATTT

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  TTGGCGGACGCTTTCCTCGGGCAAGCTCCAGCTTCCTCGAGAACCCCACTCTCGGCGATCTTTCGCTGTTGCTTTTCCCG
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  ACAGTACTGAAAGAGAGATAATAAATACTAAATTTGTGTGAAAATTTTAAACATTAGGAGATGTAAAC------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  CAGGAGTTTCCGCCTGTCGCTCGAAGGAACCAAAGAACACAAATCAACACAAAAATCGGAGCTGTCTCAAAAGTCTATCT
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  TTTGAGGCAGCTCCTTTGCTTATTCGTTCGAAATGGCGACTTGGCGGACGCTTTCCGCGGGCAACGCTCCAGCTTCCTCG
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  AGAACCCCACTCTCGGCGATCTTCCGCTGTTGCTTTTCCCGCAGGAGTCGCCGCCTGTCGCTCGTTTGACTCCCATTAAC
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  GCGCGAAAGAACATACAAAAAAATCGCCCAATCGTTTAAAATGAAGGTACCACTACCAAAATTCAAACGAAAGAAGGCGA
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------

  
0  _____
1  -----
2  -----
3  -----
4  -----
5  -----
6  -----
7  -----
8  -----
9  -----
10  -----
11  -----
12  -----
13  TTTTT
14  -----
15  -----
16  -----

Complementary Intergenic Regions

IGR  +  4065795  4065971  ()  21  yxeB