BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (- 3789493 to 3789698) circular

Term (98.40)%  AAGGACTGCATAGCCAGTCTTTTC--------------------------------------------------------
Islands  AAGGAC.GCA.AGCCAG.C....C....A....AAGA.AG.G,,,.,,,..CCGAAC...,,,..,,,...AAG..A..A
5'-   AAGGACTGCATAGCCAGTCTTTTCTTTTATTTTAAGATAGTGAAATAAATTCCGAACTTTAAATTAAATTTAAGTTATTA
          |         |         |         |         |         |         |         | 
          3789690   3789680   3789670   3789660   3789650   3789640   3789630   37
          |         |         |         |         |         |         |         | 
3'-   TTCCTGACGTATCGGTCAGAAAAGAAAATAAAATTCTATCACTTTATTTAAGGCTTGAAATTTAATTTAAATTCAATAAT
Islands  ..CC.GACG.A.CGG.CAG,,,,G,,,,.,,,,..C.A.CAC...A...AAGGC..G,,,...AA...,,,..CAA.AA.

  
Islands  A.A..CG.....ACCAA.,,,,,...AGA......,,,,,.AA.C....ACA.CGGCC..,,,,,CCA.G.ACAA.AG.G
5'-   ATATTCGTTTTTACCAATAAAAATTTAGATTTTTTAAAAATAATCTTTTACATCGGCCTTAAAAACCATGTACAATAGTG
          |         |         |         |         |         |         |         | 
  89620   3789610   3789600   3789590   3789580   3789570   3789560   3789550   37
          |         |         |         |         |         |         |         | 
3'-   TATAAGCAAAAATGGTTATTTTTAAATCTAAAAAATTTTTATTAGAAAATGTAGCCGGAATTTTTGGTACATGTTATCAC
Islands  .A.AAGC,,,,,.GG..A.....,,,.C.,,,,,,.....A..AG,,,,.G.AGCCGGAA.....GG.ACA.G..A.CAC

  
Islands  A.GG.,,,,,C,,,GAACAGGA.ACGGA.AGGAGAGGA.C.CGC.G
5'-   ATGGTAAAAACAAAGAACAGGATACGGATAGGAGAGGATCTCGCTG
          |         |         |         |       
  89540   3789530   3789520   3789510   3789500   
          |         |         |         |       
3'-   TACCATTTTTGTTTCTTGTCCTATGCCTATCCTCTCCTAGAGCGAC
Islands  .ACCA.....G...C..G.CC.A.GCC.A.CC.C.CC.AGAGCGAC

IGR  -   3789493  3789698  ()  22  glyA

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 - 3789493 3789698 glyA [COG0112]
1 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 - 2076394 2076561 CAC1960 CAC1959 [- -]
2 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 + 1968449 1968552 CAC1818 [COG0382]
3 Sulfolobus tokodaii A NC_003106.1 + 856508 856571 ST0881 [COG0425]
4 Clostridium perfringens B/C NC_003366.1 - 2271695 2271933 topB [COG0550]
5 Methanosarcina mazei strain Goe1 A NC_003901.1 + 3912668 3913517 MM3215 [-]
6 Clostridium tetani E88 B/C NC_004557.1 - 1594614 1594893 CTC01471 [-]
7 Wigglesworthia brevipalpis P-g NC_004344.1 + 307116 307279 Wbr0301 Wbr0302 [COG0795 COG0795]
8 Oceanobacillus iheyensis B/C NC_004193.1 + 2781044 2781157 OB2711 OB2712 [COG1288 COG1288]
9 Oceanobacillus iheyensis B/C NC_004193.1 + 484163 484353 OB0459 [-]
10 Campylobacter jejuni P-e NC_002163.1 + 146507 146704 Cj0144 [COG0840]
11 Streptococcus pneumoniae B/C NC_003028.1 - 2154697 2154874 SP2233 [COG1511]
12 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 - 2138333 2138936 CAC2027 [-]
13 Synechocystis sp. PCC 6803 Cya NC_000911.1 - 1788373 1788549 sll1885 [-]
14 Aquifex aeolicus Aq NC_000918.1 + 645784 645832 ftsH leuC [COG0465 COG0065]
15 Vibrio cholerae chromosome II, complete chromosome P-g NC_002506.1 - 267080 267444 VCA0246 [COG3037|COG3414]
16 Mycoplasma genitalium B/C NC_000908.1 - 338324 338365 MG277 MG276 [- COG0503]
17 Ureaplasma urealyticum B/C NC_002162.1 + 306400 306446 UU271 hit UU273 [- COG0537 -]
18 Aquifex aeolicus Aq NC_000918.1 + 408255 408353 rpoN [COG1508]
19 Bacillus halodurans B/C NC_002570.1 + 1878974 1879313 BH1805 [COG4260]
20 Campylobacter jejuni P-e NC_002163.1 - 1594797 1594901 recA eno [COG0468 COG0148]

0  ________________________________________________________________________________
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5  TTCTCTTCCATTTCTCCTTTATCTACTATATTTGCCTGTTCTTGCCAGCAATGAATAATTATTGAATAGGCGAAAATAGC
6  AATGTAGAAAATTTAAAGGAAGCATTAAAAAAGAAAGGCTATGATGGATTTATAATAGAGTAAAAGAAAGAGGTAGTTCT
7  ATTAATCCTATTTAATAAAATTATTAAGTTATTTATTTTAATATTTAATTTATTTAATATTAATATTT------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  AATATTTCCTTTCGATATAAA-----------------------------------------------------------
11  --------------------------------------------------------------------------------
12  TGAGTGAAGAGTATAAAGTAATTTACAAAGGAAGAGAATTTATTCCTTGGGCTGTAGGAAAGTTTATATTGAATACCATT
13  AAAAAATTTAAAGGCAAAAAATTGAGAATAAGTGAAGAGAAATCCGTGGC------------------------------
14  --------------------------------------------------------------------------------
15  ACCATCACCTAACTGAGAAAAAACTCACCGAATGTCGACTTAGTGATTATTTGGTGATTAATCTTGATTGGTTTTGA---
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------
19  CTTCTTGATCCATGAAACGTCAGCTCGTCTTGTTGCGTAATTATATTGGTAACGCTTGTCGTGAAAGTCAATCATGATAA
20  --------------------------------------------------------------------------------

  
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5  GCTTATTTTTTAAAATATGATATTTTAAAAGCCTTTATATGTATTCTGCTGTCTGATGGCAAACTTATCTGA--------
6  TAGCTTAGGCTAGGAGCTATCTT---------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
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12  TGATAAAACTGAATTCGATAATTTATATGCAATTTCTAAACAGGGAAAATTAGTATGGAGAGTTCAAGGATTAAATACAG
13  --------------------------------------------------------------------------------
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15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
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19  CCGAACACCTCCTTTACCTATTATATACAGTCAATTCGGTAAAAAAGCTTAGAGTTTTCAAATCACAAGTGAAAACGGGC
20  --------------------------------------------------------------------------------

  
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12  TATTTCCAAATTAAAATAATCTTCCGTATGAGCAAATGAATGTTAATGGAAATGTTATAACTGCAAAAGATTTCTATGCT
13  --------------------------------------------------------------------------------
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19  ACAAATCATATAAAAAAAGAGAACGAACAGAAGCTAATAGGATCTTAAGAAACAAAGAAGGTGGAAAATCTAT-------
20  --------------------------------------------------------------------------------

  
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12  AGAAGATATTTTATTAATCCTTTGAATGGAAATATTGAGAAAAGTGATATTGTAAAGTAATAATATTGTTGATAAGCTGA
13  --------------------------------------------------------------------------------
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12  AATTACTAAAGCGGAAATTTGGCAGTTTGGTTAAGATAATTGAAGAGTCGAAAGATCGTTTTCATTGTTTGATACATAAA
13  --------------------------------------------------------------------------------
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0  ___________________________________AAGGACTGCATAGCCAGTCTTTTCTTTT____ATTTTAAGATAGT
1  --------------------------------------------------------------------------------
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4  -----------------------------------------------GAATAAAAGCAATTTT----ATATTATAATA--
5  -----------------------------------AATTAAAAGTTTAGAAATATTTATTTCT----CCACATATCTTCT
6  -----------------------------------TTTTAATTTACAAGCACTTCTACAATAA----TTTATCATATAGT
7  -----------------------------------TATTTTTAATTTTTTAAAAAATTTTTTG----ATTATAACATA-T
8  ------------------------------------------------------AAACGTCAC----CTTTAAAGTTTTT
9  -------------------------------------------------------ACAGGAGA----AATTATTCTTGAC
10  -----------------------------------TTTTTTAAATTATAACGATATTAAGCTT----AATACATAGAATT
11  --------------------------------------------------------------------------------
12  ACTACTTTAAATTAAAGAATAATTACAAGATTTTAATTGACTGTGATGGCATTATTTTATTTTGAAAAATTTGTGATAA-
13  -----------------------------------TTTGTGGTGATCGCCGTTGAATAAGTTT----AGAGAAAAGGGGA
14  --------------------------------------------------------------------------------
15  -----------------------------------TTCTATTAATCATCGTAAATCTTGTCAA----ACTTTCTGCACAT
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------
19  -----------------------------------GAAAAAATGTTGTTTGAAAAATTCTTTT----ATTTTAAGATAGA
20  -----------------------------------------CTATGCTTCCTTTAAATCTTTG----CTTTAATTCTAGC

  
0  GAAATAA__AT___TCCGAA_CTT_TA______AATT_AAATTTAAGT_TAT___TAATAT_TCGTT____TTTA_CCAA
1  --------------------------------------------------------------------------------
2  ----TAA--TT---TAGATT-TTT-TA------AAGA-GACTTTGAAT-TTT---ATAAAG-TCTCT----TTTA-TTTA
3  ----------------TAAA-TTT-TT------AATT-AAAATTAGGT-TAT---TAATAC-AAAAT----TTAA-ATAG
4  --AATAA--TG---TTTGAA-TTT-GA------TTTT-TAATATATTT-TAG---ATAAAT-TAATGGAGCTGTA-TCAA
5  TTTAATC--AC---TTTTCA-CTT-TA------AAGT-AAATTTAAGT-T--------TATCTCTTT----TTT------
6  TAA-TAT--AT---AGGGAT-TAGGTA------AATA-AAAATTTAGA-TTT---TAAGCT-TTTTTA---TTCA-CAAA
7  GATATAA--TA---TCATGC-TTT-TATTAAAAAATT-AATTTTAAAT-TAT---AAATAT-T-GTT----TTT------
8  CCAATAT--TT---TGTATTGCTT-TA------AAGT-ATAA--ACTT-TAT---TATAAT-TTATT----TCAA-CTTA
9  TAATATG--CA---GGATTT-AGA-AA------AGAA-GATGCAAGAA-GTA---TGTAGA-CGCTA----ATAA-ATGG
10  TTCGAAG--CG---ATATTT-ATT-TA------AATA-AAATTTT--T-TAT---TACTTT-TA-TA----TTTA---AG
11  ---------AT---TTCCTC-CTT-GT------AAAC-AAATTAGACTATATGTCTAAAAA-TAGAT----TTTT-TATC
12  -AAATAA--GTATATAAGAA-TAG-TA------GAGACAAATTTAAGT-CTT---TACTAT-TCTTT----TTTA-GCAA
13  AAATTAAGTAT---TCCGAA-CTT--A------AATT-AAAGTTAATG-CGT---ATTTGA-AAGAA----TAGG-GATA
14  ------------------------------------------------------------------------ACT-TTTT
15  AGAAATC--AT---ACATTT-ATC-AC------AATT-AAATTTAAGT-TAT---TGAT------TT----TTAATCAAA
16  ---------TA---CTTAAT-ATT-TA------TATA-AAATTTAAGT-TAT---TAAAAA-TAGTT----A--------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------
19  ACGAGTA--GA---TTTTTG-TTG-AA------AAAT-GCATTTGGAA-TAA---AGAAAA-CTTTT----ATAT-TATT
20  AAAATAA--AT----------CAT-TA------T-TT-AATTTTATTT-TGT---TAGAAT-TC--------TAA-C---

  
0  T___AAAAAT___T__TAGATTTT___TTAA__AA_AT___AATCTTTTACATCGGCCT__TAAA__A____ACCA_TGT
1  -----TAATT---A--GAGATTTT---TTAA--AA-AT---AA-CATATAAATAATAAT--ATAA--A----CAAA-TTG
2  TGATAAAAATGTGT--TAAATTATTCTTTGA--AG-AT---AATTTTTTGGAGGAATAA--T------------------
3  A---AGAACA---A--ACAACAAA---ATT--------------------------------------------------
4  T---ATAACT---TAGTAAAACTT---ATAATTAA-ATGCTAAGTTTTGAGACAGCCCT--TATT--ATTTTAATA-AGT
5  T---AATAAG---G--AAATTTCT---TTGC--CA-GT---AA-CTTACAGAAATGCCTGGTAAATAA----ACAACTGA
6  TC--AATAAA---A--TATGAATA---TTAA--TT-AG---AAGGGTTTTATTTAGCAC--AATA--A----ATTA-T-T
7  --------------------------------------------------------------------------------
8  ----AAATAT---T--TAGATTTT---TTAA--AT-AA---AAAGGAGGTTAACG-------------------------
9  T---AAAAAT---T--TACATTTT---TTAA--AG-TT---AACTACATACTATGTTTA--CCTT--A----CTCT-ATT
10  T---AAAAAT---C--TAGATTTT---TTAA--TTTAT---AATTCTAAAACTTTATGT--AGAT--A----TCTC-TAT
11  T---TGTAAT---T--TAGATTTT---TTAA--TGTAT---AATCTATTATATC---------AA--A----ATTT-TAG
12  C---AATAAT---T--TTATGAAA---AAAG--AT-TT---AAGGTAAAGGCTTCATGG--GGGA--T----ATAT-AAG
13  T---TATGTC---T--TCTAATTG---GTGT--GA-GT---TTTGA----------------------------------
14  G---CAGTTT---A--ACTATTTT---TTAA--AA-GT---AATCTTCAGGAGGAGGTC---------------------
15  T---AACAAA---A--GCCAAGGT---GATC--TA-CC---TATCATTTATGTGGTTTT--CTTT--T----GGGC-AAA
16  --------------------------------------------------------------------------------
17  --------------------AATT---ATAA--AA-AT---AATTTTTTACATTATTAT--TTAT--T----TATA-GAC
18  ----CTCCTT---A--TAGATTTT---TTAA--AA-AT---AGTATTCACTAACCATTC--TATC--A----TTTC-TAT
19  G---GAGGGA---C--TT--------------------------------------------------------------
20  T---AAAAAT---T--TAGAATTT---TTAA--GG-AA---AGTT-----------------------------------

  
0  _ACAATAGTGATGGTAAAAACAAAGAAC___AGGATACGGATAGGAGAGGATCTCGCTG_____________________
1  -AATTTACTGAAAGAAATCAATATTTCA---GTAACTAATCTAAATTGGTTTAAACCGACAAGCTGTTTGCAAATATCTA
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  -GAAATAA--ATTTTTAAATCTGTCAAA---GATATA-GAAGAGGAGAGAATATAGAAGTTAATATAACAAAAGGATTAT
5  -CGCAAACTATTGATAAAATTAAATTAC---CAATATTTAATAAAAGAGGTGCCTTTTTTCTCCGGGACGAAATGAAATG
6  -ATAATATCTAACCATAAAATAATAA------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  -AAACTTTATATGAACATATATTTATAT---AAATATATAGCTGATATCATAGGAGGGGTAGAC----------------
10  -AAAATAATATTAGAAAGGAGCGCTTAA---ATT----------------------------------------------
11  -ACAATA-TGTT--TAAAAAAGGAGAAACTAAGTTTAAAGAATGGAAAGCAATTTAAAAAAAACCAACCTTTATTATTGT
12  -TAAACAGTCTAC-------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  -ATTGATAAAAATCAAAATAATCACAAA---TGAGCATTGAATGATTACTTTTGATTGTTAAAGTCTATTCCGTGAGCAA
16  --------------------------------------------------------------------------------
17  -AGGAG--------------------------------------------------------------------------
18  -GACTTTAAACATTAACCGAAAGGGATA---AAATTTTTAATCGTGGGAG------------------------------
19  --------------------------------------------------------------------------------
20  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  TATATTGCGCCAGCTTTATTTTTATTTAAGGAGGATTTTAT---------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  AATTAGGAGTGATACT----------------------------------------------------------------
5  GAACTTTTATTCCCGATTTTTTCAAGAATCCATTTACAAAATATGATGTTTAAGGTATTTTAACAACTTTATACGGATCA
6  --------------------------------------------------------------------------------
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11  C-------------------------------------------------------------------------------
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15  AAGGAGCGATTTTACGCACCACCAAAAATCACTCTTCCTACATCAAAACAACTAAGGGTAGAGAT---------------
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0  ________________________________________________________________________________
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5  AATAGAATTATTAATCGATTTAAAAACTTAAAAAATCTTATTTTTTCTTTCAGATTCTTAATAACATTTATTTTCTTAAT
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0  ________________________________________________________________________________
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5  TAAACCAGTATAAGTTGTTTTCAGATATAAGTATATTTATATTTAATCTGGGGAATTTTAGAATTGTCAAGCCGCAAGAT
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0  ________________________________________________________________________________
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5  GGCGGCAAGACGGTTTGAATATAAATTGATTTCAGCAACCGGCAGATAGCCGGAAAGACATTTTGGGGCAAAACAGAACA
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5  AATCGGTGTTTTCGGAAAAGTCAGGAATGTCTGGAAAAATCATCGATTTTCCATATCTAACATCAATAAAAGATCAAAAT
6  --------------------------------------------------------------------------------
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0  ____________________________________________________________________________
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5  AAAATAAAGGAGTGGATGGTAGTTGAAAATAAAGAAAATACTGAGCGTATTTATAGCAGTCTGTTTTTTACTGTCA
6  ----------------------------------------------------------------------------
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