BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (- 3561244 to 3561625) circular

Islands  GGC.CCCCC...A.GGC.G..G.C.AA..CA..A.A.CG,,,,.,,,.AGA.G..,,,,,.A.AGC.GCG.......AA.
5'-   GGCTCCCCCTTTATGGCTGTTGTCTAATTCATTATATCGAAAATAAATAGATGTTAAAAATATAGCTGCGTTTTTTTAAT
       |         |         |         |         |         |         |         |    
       3561620   3561610   3561600   3561590   3561580   3561570   3561560   35615
       |         |         |         |         |         |         |         |    
3'-   CCGAGGGGGAAATACCGACAACAGATTAAGTAATATAGCTTTTATTTATCTACAATTTTTATATCGACGCAAAAAAATTA
Islands  CCGAGGGGG,,,.ACCGACAACAGA..AAG.AA.A.AGC....A...A.C.ACAA.....A.A.CGACGC,,,,,,,..,

  
Islands  ..C.GG..C....GAAC..,,,,.GAAGA.CGAACAGC.,,,.C.GC..,,,,,,G......AA..A.CAGAA..CACCC
5'-   TTCTGGTTCTTTTGAACTTAAAATGAAGATCGAACAGCTAAATCTGCTTAAAAAAGTTTTTTAATTATCAGAATTCACCC
       |         |         |         |         |         |         |         |    
  50   3561540   3561530   3561520   3561510   3561500   3561490   3561480   35614
       |         |         |         |         |         |         |         |    
3'-   AAGACCAAGAAAACTTGAATTTTACTTCTAGCTTGTCGATTTAGACGAATTTTTTCAAAAAATTAATAGTCTTAAGTGGG
Islands  ,,GACCAAG,,,,C..GAA....AC..C.AGC..G.CGA...AGACGAA......C,,,,,,..AA.AG.C..AAG.GGG

  
Islands  A.A......G.CAGAC,,,.CA.CGA.A.ACGAAC.GCAGCCGGA..A.AGGA.GCA..,,,.A.,,,....A..A.C..
5'-   ATATTTTTTGTCAGACAAATCATCGATATACGAACTGCAGCCGGATTATAGGATGCATTAAATATAAATTTTATTATCTT
       |         |         |         |         |         |         |         |    
  70   3561460   3561450   3561440   3561430   3561420   3561410   3561400   35613
       |         |         |         |         |         |         |         |    
3'-   TATAAAAAACAGTCTGTTTAGTAGCTATATGCTTGACGTCGGCCTAATATCCTACGTAATTTATATTTAAAATAATAGAA
Islands  .A.,,,,,,CAG.C.G...AG.AGC.A.A.GC..GACG.CGGCC.AA.A.CC.ACG.AA...A.A...,,,,.AA.AG,,

  
Islands  .G,,,GA.A.,,,.G...A.G....GA..C.ACAG.CCAA..A.AG.G.C.......G,,,,CC....C..GGC..A..C
5'-   TGAAAGATATAAATGTTTATGTTTTGATTCTACAGTCCAATTATAGTGTCTTTTTTTGAAAACCTTTTCTTGGCTTATTC
       |         |         |         |         |         |         |         |    
  90   3561380   3561370   3561360   3561350   3561340   3561330   3561320   35613
       |         |         |         |         |         |         |         |    
3'-   ACTTTCTATATTTACAAATACAAAACTAAGATGTCAGGTTAATATCACAGAAAAAAACTTTTGGAAAAGAACCGAATAAG
Islands  ,C...C.A.A...AC,,,.AC,,,,C.AAGA.G.CAGG..AA.A.CACAG,,,,,,,C....GG,,,,GAACCGAA.AAG

  
Islands  C.A.GC.A.AA..CC..AC.G.AAGC.GGG.AAGAAGGC..GC,,,,.CA.A.GGA.GGGAG
5'-   CTATGCTATAATTCCTTACTGTAAGCTGGGTAAGAAGGCTTGCAAAATCATATGGATGGGAG
       |         |         |         |         |         |      
  10   3561300   3561290   3561280   3561270   3561260   3561250   
       |         |         |         |         |         |      
3'-   GATACGATATTAAGGAATGACATTCGACCCATTCTTCCGAACGTTTTAGTATACCTACCCTC
Islands  GA.ACGA.A..AAGGAA.GACA..CGACCCA..C..CCGAACG....AG.A.ACC.ACCC.C

IGR  -   3561244  3561625  ()  12  yvdA yvdB

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 - 3561244 3561625 yvdA yvdB [COG0288 COG0659]
1 Mycoplasma pulmonis B/C NC_002771.1 + 430343 431076 MYPU_3700 [-]
2 Listeria monocytogenes strain EGD B/C NC_003210.1 - 2863284 2863560 lmo2778 [-]
3 Mycoplasma penetrans B/C NC_004432.1 + 220096 220294 MYPE1750 MYPE1760 [COG1820 COG0363]
4 Bacillus subtilis B/C NC_000964.1 - 3399419 3399594 yvqJ [COG0477]
5 Bacillus subtilis B/C NC_000964.1 + 712917 713169 yerA yerB yerC [COG1001 - COG4496]
6 Bacillus subtilis B/C NC_000964.1 + 1414293 1414462 ykrL [COG0501]
7 Buchnera sp. APS P-g NC_002528.1 - 549465 549557 rpsM rpsK rpsD rpoA [COG0099 COG0100 COG0522 COG0202]
8 Methanococcus jannaschii A NC_000909.1 + 1553988 1554053 MJ1578 [COG2875]
9 Clostridium perfringens B/C NC_003366.1 + 226416 227206 ycgJ [COG0500]
10 Bacillus subtilis B/C NC_000964.1 - 2719533 2719955 yrkA [COG1253]
11 Methanococcus jannaschii A NC_000909.1 - 1339777 1340250 MJ1391 [COG0436]

0  ________________________________________________________________________________
1  TTTCAAAAGTATTAATATTTTGCTTTGTTTTTTTAATTAAAAACACTTTTTAAATTTCATTGCAGCACGTTGTTTGTGTT
2  TATGTTTCACGTGAAACAATCTTTTGAC----------------------------------------------------
3  AAAACTAAAAATATTAAATTATGAAACTAGTTTTATTTTATACAACTAATAACAATTAAATAATCTAGTAGTAGTACTAT
4  AAAGTGAAAAGGAAAGCCGGCGTGTTCAAATACATGCCGGCTTTTTTTGTTTTTCACTCTGTCAATTTCCCATTTTACGA
5  AGATGTAAAAGAGATGC---------------------------------------------------------------
6  TGTTCACCTCTTTAAACAATTTGACGCGGATATAGGTCTATGTATAAGTTC-----------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  ACAGTGGGGGATTTAAAATGTTTGAAGGTTTATTGTTTTTCATTTCAGCTGGAATTGTCTGTGAACTTGCTGCAATTAAT
11  AACAA---------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  ATTAGAAAAATCATCAAAGGATAATAAAAGATTTTTAAATATAAATTAAAAAAACTAATTAAGCTAAGTGAGCCAAAAAA
2  --------------------------------------------------------------------------------
3  AAAA----------------------------------------------------------------------------
4  CAAAAAATGAACCT------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  AGAAATGGCCGCAAAAATATAAAGCAACAGGCCGAATTGATTCAAATTTTAAAAGAAAATCTTTATAAAGACATTAAATA
11  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  AATCAAGACGGTTGGGTATTATTGAAACACACCAGAAAATTCAGGTGTGTTTTTATTTTGCTTTCTTTTTTAAGCCTTAA
11  --------------------------------------------------------------------------------

  
0  ___GGCTCCCCCTTTATGGCTGTTGTCTAATT_CATTATA__TCGAAAATAAATA_GATGTTAAAAATATAGCTGCGTTT
1  ---AGATGAAAATCAAAAAAAGAAAAATGATA-TTAATGA--CTCTTCTAAAGAT-AGAATCGGAAAATTCAAACTAAGC
2  ---GAGTAAGTGTGTCAAAAGATTGTTTTTTT-AAGTTGA--TTCACAAAAACTG-CATTAATGATATACTTCAAAATAG
3  ---ATAGGAGTTAAAGTTATTAACTTTTAATTGCAATA-A--T--AAAATAAACA-GAAGTTAAAAATAAAACCACTACT
4  ---TATGAATTATTGACTGAAAAATGGAAAAA-TGAGATA--TTGTAA-TAAATA-GATGTAAAAAATAGGCAACGGGGG
5  ---ATTCTGCACCAAGGTTTTTTCGTAAACTT-TGCACTG--GCGGCTGACATAA-TCGTCAATCCGCAGGCGATTCTGA
6  ---AAAATTCAAGCGTCAGCAAATTACATTAA-CATCATACGTCGAAT-TCCTTG-CATTTTCAAATGGATGTTTTATAA
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  ---------------------------------------------ATTTTTTTCC-TCCTTTTAAATTTTAATATAAGTT
10  AACGCCACTAATCGTTAGTTGAAGACTATGGG-AACCACT--CTCCATACGGAAA-AAGATGATTATTTACATCATTCAG
11  ---TCCCTCATAAAAAATAATTTAATGAAATT-TAA-ATA--CTCATAATGAATCTGATGATAAAATTGAATCATCTCAA

  
0  TTTTAAT_TTCTGGTTCTTTTGAACTTAAAATGAAGATCGAACAGCTAAATCTGCTTAAAAAAGTTTTT____TA_____
1  CAAAGAA-AATAATTAGTGAATTATTAAGCATTAGTGCTCTAAAGAAGAATCT--TTAGAAAAGTTTTT----TA-----
2  TATCAAG-CTAGTGTTTGAACGGATTTAAATTGTGAATATACTAAGTGAAGCGATTTTGTCAATATATA----TA-----
3  GTTTATT-TTAT--TTATTT--AAATAAAGGAGATGAACTTAATAGTTT-------------------------------
4  GCTCTGA-TGG---------------------------------------------------------------------
5  ACACGGC-ATTGATGAGACTGATGTTTGGCTTCAAGGAAATCCGCTCCTTTTAACTTAAAAAAGTTTTT----TA-----
6  TTTAAATATACGGGTTCTTTTGAACTTAAAATAACGGAGGTTGTT-----------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  TATAAGA-ATTAATTTAATACAAATTATTCATTAATATTCAATATCTAAAAAT----AAAAATTTTTAT----TAAAATA
10  AGTTGAT-TTTAGGTTCTTTTGAACTTATAATGTTATATATACTGTTTTTTGTTTATTCAATAAATATT----TA-----
11  AGATATT-T----GATATTGTATATTTAAAATTTATGTGGGAAA--TAGTTCTGGACTAAAAAGTTGGTAATATA-----

  
0  ATTATCAGAAT_TCACCCATATT__TTTTGTCAG___ACAAATCATCG__ATATACG__A___ACTGC______AGCCGG
1  ATTATATCTTA-GCACTAAGAGA--TTTAGTAAGGAATCAAAACTCTA--ATATTCC--ATACAATAG------AGTTGA
2  CAGGATTGTTT-AGATTCTACGC--GCTAATTAA---TTCACAAAATA--TACAATT--T---GTGTA------GAGTAG
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  ATCGAACCTTC-AAAAATTTGTA--ACGTTTTTA---TCGTGCGTGAT--GAGGAAG--G---ATGTG------ATACCA
6  --------------------------------------------------------------------------------
7  ---------------------------------------------------------------TCATT------TTTGTC
8  --------------------------------------------------------------------------------
9  ATAAACAAATTGTAACAGATATTGGTATAGAAAG---TCAATTTTTAATAATTTATGTTA---ACTTAGTTTAAAGAGTG
10  CATCGGAGGTG-TACGCCTTACT--AGGTAAGGC---AAATCA-------------------------------------
11  CATCTTTAAAT-TTAAATTTATA--AATTAAGAT---TTCTTTTAAAG--ATTTTAT--T---CCTGCGAA---AGCCCC

  
0  ATTA____TAGGATGCAT_TAAATATAAATT_TTATTATCTT_T_GAAAGATA_TAAATGTTTATGTTTTGATTCTACAG
1  TTTA----TTTTGTG-----AAAAAGTTATT-TAAAAATATTGT-GAAAC-TC-TAAA-GTATTTAGCTCAATATCACAA
2  AATA----ATGCTATAAT-TAACTATAAATT-TTATTATAGG-A-GTGTTTTT---------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  TGAG----TCTAATACAT-GTAAAGGAGAGT-ATGTGA------------------------------------------
6  --------------------------------------------------------------------------------
7  AATT----AAAATATTTT-TAAATATAAATTGTTATTATCTT-TAGTATTATA-AATTTGTTTAAAATACATTTATAAGG
8  --------------TTTT-CATAAGTAAATT-TTATTAATTT-T-GAAAGACC-TACTATAAAAACAAAAACAAGAGGAG
9  ATTA----TAGAAAGTAT-TAAATATAGATT-TTATATTGTG-T-AATA-ATA-AAAAA-TCTATGCATAAGAGATTTTA
10  --------------------------------------------------------------------------------
11  ATTAACTTTATTAATAATCTTTATAAAATTT-TTATTATTTT-T-GAAAGATACTATACGA--AAGTCATAAA---ATAC

  
0  TCCAATTATAGTGTCTTTTTTTGAAAACCTTTTCTTGGCTTATTCCTATGCTATAATTC_CTTACTGTAAGCTGGGTAAG
1  TAGAAAAACA-TAAATTCTTTTACTTTTCTTTATTAGGTTTATATACCAATATTGACTT-GTAGCTACTAAGACAATTTA
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  TTTTATAAT-----------------------------------------------------------------------
8  AAATA---------------------------------------------------------------------------
9  TTTTAAGAGATTTAATGAATTTTTAAAAATAAATTCAAAAAGGTATTGATTTTTAATAT-GAATTATATTAAAATTTAAT
10  --------------------------------------------------------------------------------
11  TCGCATTAAAGA---TTTAATACAAAACAATAGCGAAATTTTTATATTTGTTAAAATTTACTTACATTAAAACAAGTAGT

  
0  AAGGCTTGCAAAATCATATGGATGGGAG____________________________________________________
1  AAGAAAATTAAGATAATTAAAAATTAATATAATTACATAAAACATAAAGGCTATGTAAGATTTATTTTTATCAAAATTTA
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  AAAAATTGCTAGTTTTCAGATAGAATTACTAGGATATAAATGCATTGAAAAAGTAAAGTAGCATTTTGGAAAATCACAGA
10  --------------------------------------------------------------------------------
11  TTTTGCAAAAGTTATTAAAATTAAAAAATACCTTACTAAAGGAAGGCATTCATTACTACCCATATATTCTTTTAAAATGC

  
0  ________________________________________________________________________________
1  TAAGAAATAATATGTTTTGATCAAATAATTCACTTATGAATTTAATAATAAAAATTAGAATATTATTTAATAAAAAAAGT
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  GAGGAAAATGATGGTGAGAGTTTTCTATTTAGAAGAAATGTGAAGTGCACTTTGGAGCAGAAATCCGAAATTTTTAGTAG
10  --------------------------------------------------------------------------------
11  TCCGCAAAAACTAAAAATGCCAATTTGGTGATAAA---------------------------------------------

  
0  ________________________________________________________________________________
1  ATTTATATTTTTTAAAAAATCTATTAAAAAAATTTCAATTTCAATTAAACTAAATTTAATAT------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  GGTTCTCCGGGATCACCCGTTATAGTGATTAGGCATGTTAGTGCTAAATTTTGAGTGCAGGTATATCTTTTATATCTGAA
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  TTAGAGTGGAACCGCGAGTTACCTCGTCTCTATAGATTTTTATAGAGACGAGGTTTTTTTATTTTAAATTTGCTTTATAT
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  AGTTGTTTTAATACAAATATATCCTATTATATTATTTGAAAATTAATCAATTTAAAAAAATATAGTTTATTTAAATTTTA
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  ________________________________________________________________
1  ----------------------------------------------------------------
2  ----------------------------------------------------------------
3  ----------------------------------------------------------------
4  ----------------------------------------------------------------
5  ----------------------------------------------------------------
6  ----------------------------------------------------------------
7  ----------------------------------------------------------------
8  ----------------------------------------------------------------
9  ATTAGGGGGCTAATAAAATGAATTCAGTAAAATATTTTAATTCCATAGCTAAAGAATGGATAAA
10  ----------------------------------------------------------------
11  ----------------------------------------------------------------

Complementary Intergenic Regions

IGR  +  3561244  3561625  ()  9  yvcT