BLISSBreaker Lab Intergenic Sequence ServerHome


Intergenic view options: Interleaved


NC_000964.1 Bacillus subtilis (- 3403496 to 3403892) circular

Islands  AAGAA.CA..CC....GA.AGA.GA.GG.A..AAG.A.ACAAGA.C,,,...AG.G...ACGAGGA....GC..CCA.AC
5'-   AAGAATCATTCCTTTTGATAGATGATGGTATTAAGTATACAAGATCAAATTTAGTGTTTACGAGGATTTTGCTTCCATAC
    |         |         |         |         |         |         |         |       
    3403890   3403880   3403870   3403860   3403850   3403840   3403830   3403820 
    |         |         |         |         |         |         |         |       
3'-   TTCTTAGTAAGGAAAACTATCTACTACCATAATTCATATGTTCTAGTTTAAATCACAAATGCTCCTAAAACGAAGGTATG
Islands  ..C..AG.AAGG,,,,C.A.C.AC.ACCA.AA..CA.A.G..C.AG...,,,.CAC,,,.GC.CC.,,,,CGAAGG.A.G

 
Islands  ACAA.A.GGGG,,,,G.CA..CAGGACACA.A.ACAAGCC.G.CAG.CA.A.AG.A.AA..AC.CCG,,,,,CGGA.ACG
5'-   ACAATATGGGGAAAAGTCATTCAGGACACATATACAAGCCTGTCAGTCATATAGTATAATTACTCCGAAAAACGGATACG
    |         |         |         |         |         |         |         |       
    3403810   3403800   3403790   3403780   3403770   3403760   3403750   3403740 
    |         |         |         |         |         |         |         |       
3'-   TGTTATACCCCTTTTCAGTAAGTCCTGTGTATATGTTCGGACAGTCAGTATATCATATTAATGAGGCTTTTTGCCTATGC
Islands  .G..A.ACCCC....CAG.AAG.CC.G.G.A.A.G..CGGACAG.CAG.A.A.CA.A..AA.GAGGC.....GCC.A.GC

 
Islands  AA.G.C,,,.AGG.GCCGG.CCG.GAACAACAGCCGGC..,,,,GGG,,,CCGG.,,,,GCCGG.GCGG.CCCGCCAC.G
5'-   AATGTCAAATAGGTGCCGGTCCGTGAACAACAGCCGGCTTAAAAGGGAAACCGGTAAAAGCCGGTGCGGTCCCGCCACTG
    |         |         |         |         |         |         |         |       
    3403730   3403720   3403710   3403700   3403690   3403680   3403670   3403660 
    |         |         |         |         |         |         |         |       
3'-   TTACAGTTTATCCACGGCCAGGCACTTGTTGTCGGCCGAATTTTCCCTTTGGCCATTTTCGGCCACGCCAGGGCGGTGAC
Islands  ..ACAG...A.CCACGGCCAGGCAC..G..G.CGGCCGAA....CCC...GGCCA....CGGCCACGCCAGGGCGG.GAC

 
Islands  .AA..GGCCAAGCGCCAAGAGCCAGGA.ACC.GCC.G...GA.CAGCACGAA..C.GCGAGGACAGA.GA.G.G.,,,CA
5'-   TAATTGGCCAAGCGCCAAGAGCCAGGATACCTGCCTGTTTGATCAGCACGAATTCTGCGAGGACAGATGATGTGTAAACA
    |         |         |         |         |         |         |         |       
    3403650   3403640   3403630   3403620   3403610   3403600   3403590   3403580 
    |         |         |         |         |         |         |         |       
3'-   ATTAACCGGTTCGCGGTTCTCGGTCCTATGGACGGACAAACTAGTCGTGCTTAAGACGCTCCTGTCTACTACACATTTGT
Islands  A..AACCGG..CGCGG..C.CGG.CC.A.GGACGGAC,,,C.AG.CG.GC..AAGACGC.CC.G.C.AC.ACACA...G.

 
Term (99.81)%  ------------------------GCATCTTTACCGTCGTAGAGATGC-----------------------------
Islands  A.AGGC......G.G..G...ACAGCA.C...ACCG.CG.AGAGA.GC......AG..CG...AGGAGG,,,,GA..
5'-   ATAGGCTTTTTTGTGTTGTTTACAGCATCTTTACCGTCGTAGAGATGCTTTTTTAGTTCGTTTAGGAGGAAAAGATT
    |         |         |         |         |         |         |         |    
    3403570   3403560   3403550   3403540   3403530   3403520   3403510   3403500   
    |         |         |         |         |         |         |         |    
3'-   TATCCGAAAAAACACAACAAATGTCGTAGAAATGGCAGCATCTCTACGAAAAAATCAAGCAAATCCTCCTTTTCTAA
Islands  .A.CCG,,,,,,CACAAC,,,.G.CG.AG,,,.GGCAGCA.C.C.ACG,,,,,,.CAAGC,,,.CC.CC....C.AA

IGR  -   3403496  3403892  ()  15  yvrC yvrB yvrA yvqK

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 - 3403496 3403892 yvrC yvrB yvrA yvqK [COG0614 COG0609 COG1120 COG2096]
1 Clostridium tetani E88 B/C NC_004557.1 + 823199 823809 CTC00778 [-]
2 Clostridium tetani E88 B/C NC_004557.1 + 768598 768887 CTC00745 CTC00746 [COG1146 COG2109]
3 Brucella suis 1330 chromosome I P-a NC_004310.1 - 1270628 1270940 BR1310 [-]
4 Brucella melitensis chromosome I P-a NC_003317.1 + 717343 717667 BMEI0691 [-]
5 Clostridium tetani E88 B/C NC_004557.1 - 1487736 1488224 CTC01379 CTC01378 CTC01377 CTC01376 CTC01375 [COG0747 COG0601 COG1173 COG0444 COG4608]
6 Mycobacterium leprae strain TN Act NC_002677.1 - 2214167 2214812 PPE [-]
7 Pasteurella multocida P-g NC_002663.1 + 1705171 1705352 PM1507 PM1508 PM1509 [COG4942 COG2861 -]
8 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 + 1509765 1510262 cbiM CAC1366 cbiQ [COG0310 - COG0619]
9 Bacillus halodurans B/C NC_002570.1 + 528652 529225 nrdA nrdB [COG0209 COG0208]
10 Bacillus halodurans B/C NC_002570.1 - 466586 467275 BH0438 BH0437 [COG0620 -]
11 Bacillus halodurans B/C NC_002570.1 + 1660994 1661465 BH1585 BH1586 BH1587 cobD cobC cobP cobQ cobS BH1593 BH1594 BH1595 [COG0614 COG0609 COG1120 COG1270 COG0079 COG2087 COG1492 COG0368 COG0406 COG2087 COG2096]
12 Ureaplasma urealyticum B/C NC_002162.1 + 225483 225604 rpoB rpoC [COG0085 COG0086]
13 Mycobacterium tuberculosis H37Rv Act NC_000962.1 - 309546 309934 PPE cobQ cobU [- COG1492 COG2087]
14 Bacillus halodurans B/C NC_002570.1 + 870512 870963 BH0798 [COG1607]

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CTTATATAACAGATTAAGAAGGATGATATTTCATAATAGAGATA------------------------------------
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AAGTTTGATAAAAATCATATAAATAAAAAACCCAGAAATAATTCGGGGT-------------------------------
CAGCACATACGACTCGGGTTAACTGCCCGGATATGGGTTGCTCGACCGTCAGGATTTGGCAACTGTTGTGGTAACTAACG
--------------------------------------------------------------------------------
TTAAGGAAGTGAAAACTAACTTATGCATA---------------------------------------------------
ATGATTAATTATACAGATCTATGCATGGGTAATAAGCGTTCAGCAAATCACTAATCT-----------------------
10  GATGTACGTCCTCCATATGAAATAGATTTTTTAGAAAGACCAGATATGTACTGTTCATTCAGCCTTTTCATGAAAAGTGT
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------

 
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GTGAAATTCATAGCGTCGGTGACCGTCAACTTCTCGGGAAGTAGTCTAGTTTCCGGGCTGAAGTCAGTCAGGCTAGCCGG
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10  ACCACGCAAGAAGTAACAGTTATTTTTTAAAAATGTAAATTAAGTAAGGGTTTTGTATACAATTGATTAATGTTTCAACT
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------

 
_____________________________AAGAATCATTCCTTTTGATAGATGATGGTATTAAGTATACAAGATCAAATT
-----------------------------TCATCCTTTTATTCACAAATTATTTATAACTTTAACTTTATTTTTTATTAA
--------------------------------------------------------------------------------
-----------------------------------------------------------TTGACGCCGCGAAGCCGAAAG
-----------------------------------------------------------TTGACGCCGCGAAGCCGAAAG
-----------------------------TTTTTATTTATTCTTCCCAAAACAAATCATCCAATGTTTGTGATAATTCCT
CATCTGGCGCGGCGCTGATGTCCAGATGGGCTAGAGGGGCTAACGCATCCAGCCATGGCGAGTAGTTAGGCTGGTTATTA
--------------------------------------------------------------------------------
-----------------------------AACTGTATTTGTTGTCAAAGCACAATTGTGTTTCCATAACTTATATGATAC
-----------------------------GCGAAACCAAATAAATGATATTAACTGTAAACCAGACCTAGCAAAGGGTTC
10  CTCGATTTACTGCTCTGAACGATGCCAC-TCGCAAAAAAATATATTACATTAAAATAGCAAAAACAGAGTAGAATACTAT
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------

 
TAGTGTTTACGAGGATTTTGCTTCCATACACAATATGGGGAAAAGTCATTCAGGACACATATACAAGCCTGTCAGTCATA
AATGTGTTATAATGAATATAAAAGTTGATAAGATATTAAAATAAGTAATGAATATTATCAAATTAATAAATATTAACAAT
------------------------------------------------TAATTAAAATAGAATAATATGAATAAAAAAGG
CCTAGTGTCAAACCATGTGACAGGTTTTGCCGGAACGAATCCCCGGCAATACCAAAAGGGAATGCGACGGACGGACCCAC
CCTAGTGTCAAACCATGTGACAGGTTTTGCCGGAACGAATCCCCGGCAATACCAAAAGGGAATGCGACGGACGGACCCAC
TTTCAACCTTTGACAATAATTATTTAATAATTTTTAAAAAAGTTATAATATATTGACAAATTAATAAACTCAATATATAA
CGGTTAGGGTCACCCAGGGGACGTGCAATCGGGGTGGGCCACACTCCATCGGGCCCACGGTGTAGTAGCAAATCAGGCTG
--------------------------------------------------------------------------------
CATATAAATTATGAGAAATAGTTTAGGTATTTAATGAATACCTTTAAGTCCATATAAATAAAATTTAATATATAAGAATA
GTCTCAGGTTCCAATTTGTTCATAAATCGGTTAGAAAATTTTCCTTGCATTTCCGATGTATGTTCTTTACCATACAATAT
10  GATTTATTGGATTAGAGCTTGATATAAAGGGGTTAGGAGGAAAGAAACTGATTAGGTTTTCGCTTATTTCCTACTTGACA
11  ---------------------------------------------ATTTTTGCAAAAACGCTGTTCTTTTGCGTTATTTT
12  --------------------------------------------------------------------------------
13  --------------------------------------CACATGTGACTGTTGCGACCGTGCGATGTGACCGACCCCTGC
14  -------------------------------------TCACAATGAAAACGGTTGCGAATTAGGCTCCTTTCTGTATACT

 
TAGTATAATTACTCCGA_AAAACGGATACGAATGTCAA___ATAGGTGCCGGTCCGTGAA____CA__ACAGCCG____G
ATATTTGAAAATAAATA-TTTACTATAAAAATTAAATA---TTTATTTATAAAGTTTCTT----GT--AAAAGAG----A
TGAAATAGTTATTTCTT-AAAAGGGAAGCATGGTGAAA---ATCCATCACGGTCCCGCCA----CT--GTAATCA----G
GCCGGGCGTCTTTATCG-CAGCCGACCCCGCGACTGTA---GAGCGGAGAGGGAAGAGGC----AA--GCCGGGC----A
GCCGGGCGTCTTTATCG-CAGCCGACCCCGCGACTGTA---GAGCGGAGAGGGAAGAGGC----AA--GCCGGGC----A
TTAGTAAGATTTGTTAA-AAAGTTAATATAATAAGACA---ACAGGTTTGAAATAATATT----TA--TTATTTC----A
CGGGCTGAGCGGATTGC-CCCAGCGTTGCTGTACTATA---TGCGACACTGTGTATCTGT----AA--AGGCGAT----G
-------AAAAAATCTC-CTCAATGTTAATAAAAAAAC---TATGGCAAGTTATAGCAAA----AA--ACAGCCG----G
TAGAGTTTTAGTATCAA-TAATAGATTGCTACTAAAAT---TTGTAGGTTCAACTGAGGA----GT--CTTAGTT----G
ATAGAGTCAAAAACAAT-TAAACATTACAATATCTAGT---GTTTGTGGACGGTAAGGTG----CC--CGAAGCG----G
10  AATCGGCTTTCCTCCGTTAAAGTGGATTAAAATTTCATCGTTTGGGAACAGGTACGTTAAGTCACATGATAGACTTAATG
11  TTGTATAATAAAGACGA-CTTATCAATGAATCGTATAT---CGCGCTGAAGGGTCGTTCA----AT--GTTTGAG----C
12  --------------------------------------------------------------------------------
13  TTGGCAAATGCCGCTCA-ACGTGCAAATCCACGCTCTG---CATGCCAATATTCTTCCCG----TC--AGGCGAT----G
14  AAAAACGTTGGGGCATA-ATTTAATAAGCACGCTCAAG---CATTAGGTGGTTCAAACAA----TC--GGTTGAA----T

 
CTT_AAAAGGGAAACCGGT_A_A_AAG_CCGGTGCGGTCCC_GCCACTGTAATTGGCCAAGCGC___CAAGAGCCAGGAT
ATT-AAAAGGGAAGGAGGCGA-A-AAT-CCTCCACGGTCCG-GCCACTGTAATTGGTGAGTTTA---TTCCATAAGCCAT
GGA-GTTAGGTTTTACCAC-T-G-TTA-ATTAACGGGAAGG-AGAATCTATAAAAACTATGAAC---TGTAAGTCAGGAG
ACC-GGCAGCCACTGGAAA-T-C-AGA-TAGATTTCTGGGA-AGGCGCTTTATTCCCCAAGACC---CGCGAGCCAGGAG
ACC-GGCAGCCACTGGAAA-T-C-AGA-TGGATTTCTGGGA-AGGCGCTTTATTCCCCAAGACC---CGCGAGCCAGGAG
ATT-AAAAGGGAAACAGGT-G-T-AACTCCTGTACGGTCCC-GCCGCTGTAAT-----AAAAGA---GTAGTGC-AGAAT
ACG-ATGCAGGAAGTCGGT-GCA-AAG-CCGGCGCGGTCCC-GCCACTGTAATCGGGGAGCGAC---CCTCGTAGGCCAC
CTTTAAAAGGGAAATACTT-T-G-CTT-TTCTGATCTGTCG-CAAAAATTTAATGAAAAATTAG---ATTTAGAGCCCTT
ATT-AAAAAGGAATCAGGTGA-A-AAG-CCTGAGCGGTCCC-GCCACTGTAATAAAGGAGTTTA---AGTACAATATGTC
CTT-AAAAGGGAATCTGGT-GCA-AAT-CCGGAGCTGTCCCCGCAACTGTGAGTGCTACGAACG---GAACGATTTGCCA
10  TTT-AAAAGGGAATCCGGT-GCA-AAT-CCGGAGCGGTCCC-GCCACTGTCATAGCTGAGTTGT---AACGATATTGTCA
11  GTG-AAAAGGGAAGTCGGTGA-A-AAT-CCGACACGGTCCC-GCCACTGTAAATGGGAGAG-GCTTGCAAGATCCACTGT
12  ----------------------------------------------AATAAAAATAATTTTATT---ATTAATATCTTTA
13  ACG-ATGCAGGAAGCCGGT-G-AGAAT-CCGGCGCGGTCCC-GCCACTGTCACCGGGGAGCGAC---CCTCGTAAGCCAC
14  CTG-AAAAGGGAAGCTGGT-G-A-AAGTCCAGCACGGTCGC-GCCACTGTAATAAGG--AGCTA---CATGTG--AGGAA

 
ACCTGCCTGTTTG_ATCAGCACGAATTC_TGCGAGGACAGATGATGTGTAAA_CAATAGGCTTTTTTGTGTTGTT_TACA
TGAGATATTCTTG-AGAAGGCGGAAATA-AATGATGAACCATAAGTCAGGAG-ACCTGCTTTATAAGAATAAATA-TACA
ACCTGCCTTTTTT--TAATTAAACATTCCTACGAGGATGGGAGATGTG-------ATAG----TTTTATGAAGCT-AAAA
ACCTGCCTGTTGC-ATGAGGGCATTGCG-CCCGCACCCCATGGGAGGTTTTT-CCCTGCTGCCTGCACGGAGGTT-GTC-
ACCTGCCTGTTGC-ATGAGGGCATTGCG-CCCGCACCCCATGGGAGGTTTTT-CCCTGCTGCCTGCACGGAGGTT-GTCA
ATGCCACTGTTAATATGGGAAGGCTTTG-TACTATGT----TGATTTTTAAGTCAGAAGACCTGCCTGT--TGTTATAGA
GGCCATTGGCTGG-AAGGCGAGGCAAGC-GGTGATCCGAGAGCCAGGAAACT-CGCGTCATCGCGTCCTGCTAAC-CCGG
GCTCAAATAATGT-TATATTTAATCAAC-GTGATTTTAACGGAAGGTTTTGC-A--------------------------
ACTGGGAAACTGG-GAAGGCGTACTTAA-GCAATGATTTTTGAGCCAGGATA-CTTGCCATATTCTAGTATGTTT-TTTC
CTGTACATCCTCT-ACTTCTTGAGAAAT-GTATGGGAAGGCTTCTAAGTAGG-TAAAGCACGAGTCAGGAGACCT-GCCT
10  CTGACCGTTCATT-GGTTGGGAAGACTG-TTGCAATGTTGACGCTAGAGCCA-GGAGACCTGCCTGTTCTAACAG-CACT
11  CTAGCGACGGGAA-GGGGGCAAGTACTC-GATGAACATAAGTCAGGAGACCT-GCCTTTCAGTTTGAGTGTGTAG-CCTT
12  ATATAGTATAATT-ATAAAATATTCTGT-CTATTTAAGCACAAATGTGTAAT-AAATAGGCTTTTTTCTATTTTT-GTGA
13  GGCCACAGGCTGG-AAGGCGAGGCAAGC-AACGATCCGGGAGCCAGGAGACT-CGCGTCATCGCGTCCTGCCACC-CGGG
14  ACCACTGTCCAAA-GGATGGGAAGGTAC-ACATGGAGTGTTGATCTTAAGTC-AGGAGACCTGCCTAATGTATGC-ACTT

 
GCAT_CTTTACCG_TCGTAG_AGATGCTTTTTTAGTTCGTTTAGGAGGAAAAGATT________________________
GCTT-CCGGAGAA-AGTTGG-GTATTAAAGGTTATATTAAGTTTTTTAACTGTTGTTATAATACCTTATATTCTTATGGA
ACAT-CTTTTCCT-AGGAAA-AGATGTTTTTTTTGTTAATTTAAAAGGGGGAGTTAAT----------------------
--------------------------------------------------------------------------------
TGGC-TGCACAT--------------------------------------------------------------------
TCATACTCTACGGATGATAGGAGGGGGTTTATT--TTTGTATATAATTAATTCAATTTCATGAAAAATCCTTTTTATCTA
GGCG-GCGTATCC-CGGAGA-AAGCTGTCTTAGTCGTGACGTTGCAACTTTATACTTTTTCGGCCCGGTCGCCACTATGG
--------------------------------------------------------------------------------
TACG-AGCGATAG-GAGGAA-TAATCATGAAGTATAACCATAGGTGTACTATATGCATTTGGCCTTTTAACGTATTGTTA
TACT-TCCACAAG-TTTCGC-ATCTTCGGGGGTTGAGCATGTGAGGCGGCAAGTATAAGGCAGTGCGTGTATTCCGACTG
10  GCTT-TTACCTAC-GGGAGA-TAGGGAGGTGTTTCAAACATGTTTCGTTGCATCCAACGAAGGATATTTTTACCACTCTC
11  CGAG-GAAAAGGT-GAAGCA-GTTCATTTGATTTCATGGAGATAGCATGGGATCTAGACTGGTTTTGCAAAAACACTCTG
12  GGTA-CTAGTTAG-AAT---------------------------------------------------------------
13  GCGG-TGTACCCC-GAGAAA-GCTAACCGGTCATGACGCTCCAAACCTTGTCTAGCGGTCGGGCCACCACCACGCTGCTG
14  GCAC-CTACGCGT-CATAGG-GAGGAGTGATAGCTGTTTTACATATTGTTTTTAATCGTTGGATTCGTATGCTATCACAA

 
________________________________________________________________________________
GTGGCATGGAATATAAGGTTTTTTTATTTATATAAAAACTATTATATAAATTATATAAGGAGGGGTTATATAAGAGCGGA
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TTAGACGATGAAAAGGATTTTTTACT------------------------------------------------------
AGCGTTGAATCGCATCCGATTACGGGTGGCTCGCG---------------------------------------------
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AGGGGCTTTTTATTTTATCAGAATAATTTTCAAAAGGGAGTGTTTAT---------------------------------
AAAGGGAGGGGGACACGCTTGTGTATTGTACTGTCGTTTCAAGCCTTTCTCTCGAAGGAAGGTTTTTTATTTGGATTGAT
10  CCATATTGGTAAAAATATCCTTTTTATTTTACCTTTTTACTCTATCACTTCAAGGAGGAATTTTAC--------------
11  AAGGGAGTGTTTTTCTTTTTCACTTACGAAAGTTTAACTTCCATTAAGGTTAGGCGACAAGCCAAGTTTTCTATGCTAGT
12  --------------------------------------------------------------------------------
13  GGCCTTAACGTGGCTGCTCGCGACGCGACGACACCTCCGCCGGCGGTCAGCCGCCG------------------------
14  ACTCTCTTTCCTATGAAAAGAGGGTTTGTTTTGCTTTAAGAAGTTAGTCTAAGCAACGGCTTTCGCTAGATGACTTGCGA

 
_________________________________________________________________
TGTTGAGTATGTATATGTATATGTAAGGCAAGATAAATTATTTTTAATTAAAGAAGGGGTAGAAT
-----------------------------------------------------------------
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AGGGAGGAAATAAG---------------------------------------------------
10  -----------------------------------------------------------------
11  GGCCCACCACCTTCAGCGACGAGCGCCATTGATTAGTACGATAGAGAAAAGAGGGGATTAGTAG-
12  -----------------------------------------------------------------
13  -----------------------------------------------------------------
14  CAAGCCGAGTTTTCAAATGACATTGAAAGGGCGGAGACATCC-----------------------

Complementary Intergenic Regions

IGR  +  3403496  3403892  ()  4  yvrD