BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (- 3345176 to 3345356) circular

Islands  AGGG.AGCC.CC....AACC.A..A...A.A..A.AA.G.A..A.GACG..A.AA.AC,,,...ACA......A....AG
5'-   AGGGTAGCCTCCTTTTAACCTATTATTTATATTATAATGTATTATGACGTTATAATACAAATTTACATTTTTTATTTTAG
        |         |         |         |         |         |         |         |   
        3345350   3345340   3345330   3345320   3345310   3345300   3345290   3345
        |         |         |         |         |         |         |         |   
3'-   TCCCATCGGAGGAAAATTGGATAATAAATATAATATTACATAATACTGCAATATTATGTTTAAATGTAAAAAATAAAATC
Islands  .CCCA.CGGAGG,,,,..GGA.AA.,,,.A.AA.A..ACA.AA.AC.GCAA.A..A.G...,,,.G.,,,,,,.,,,,.C

  
Islands  ,,,.A.AGC,,,,,.GGGAA.CGA..AC.C.,,,,,.AACAG,,,GACCAAG..G...CCAG.GACG,,,.AACGGG.C,
5'-   AAATATAGCAAAAATGGGAATCGATTACTCTAAAAATAACAGAAAGACCAAGTTGTTTCCAGTGACGAAATAACGGGTCA
        |         |         |         |         |         |         |         |   
  280   3345270   3345260   3345250   3345240   3345230   3345220   3345210   3345
        |         |         |         |         |         |         |         |   
3'-   TTTATATCGTTTTTACCCTTAGCTAATGAGATTTTTATTGTCTTTCTGGTTCAACAAAGGTCACTGCTTTATTGCCCAGT
Islands  ...A.A.CG.....ACCC..AGC.AA.GAGA.....A..G.C...C.GG..CAAC,,,GG.CAC.GC...A..GCCCAG.

  
Islands  ,,,GA.AGGGGGAC....C.G
5'-   AAAGATAGGGGGACTTTTCTG
        |         |    
  200   3345190   3345180   
        |         |    
3'-   TTTCTATCCCCCTGAAAAGAC
Islands  ...C.A.CCCCC.G,,,,GAC

IGR  -   3345176  3345356  ()  12  yurJ

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 - 3345176 3345356 yurJ [COG3839]
1 Clostridium tetani E88 B/C NC_004557.1 + 687916 688535 CTC00671 CTC00672 [COG0117|COG1985 COG0307]
2 Clostridium tetani E88 B/C NC_004557.1 - 679030 679172 CTC00659 [COG1785]
3 Clostridium tetani E88 B/C NC_004557.1 + 1038688 1038822 CTC00972 [COG1620]
4 Sulfolobus tokodaii A NC_003106.1 - 2147545 2147685 ST2148 ST2147 [COG0648 COG0561]
5 Listeria monocytogenes strain EGD B/C NC_003210.1 - 2121309 2121482 murE [COG0769]
6 Clostridium perfringens B/C NC_003366.1 - 2071083 2071200 CPE1791 [COG0303]
7 Methanosarcina mazei strain Goe1 A NC_003901.1 - 3603900 3604044 MM2982 [COG3467]
8 Leptospira interrogans serovar lai str. 56601 chromosome I Sp NC_004342.1 + 857100 857764 LA0860 LA0861 [- COG1366]
9 Staphylococcus aureus subsp. aureus N315 B/C NC_002745.1 + 597711 597923 SA0511 [COG0451]
10 Methanococcus jannaschii A NC_000909.1 + 1030745 1030875 MJ1093 [COG0535]
11 Staphylococcus aureus subsp. aureus N315 B/C NC_002745.1 - 2562643 2562946 SA2285 [-]

0  ________________________________________________________________________________
1  TTAAATTATCCCTCCCAGTCTATATATATGTGTTCCACATAAATACAGATGTGCTAAATCTATGAGTAATATTTTATAAC
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  ACTAAAATATTTTGTTA---------------------------------------------------------------
5  TAATAGGAAGATAGAAGTATGTCAGCTTTAT-------------------------------------------------
6  GAAAACTTTTATTACTAAAAACACTA------------------------------------------------------
7  TTTCCTGTGTAATTTTTACAGTACG-------------------------------------------------------
8  GTATAAAAGTTATCTTTAAGCAGACAGAATTGAAGAGCTAAAATCGTTAA------------------------------
9  AAAATTTAATTTGACAGTAATTAGCAATAATAAACGCTATAAATTACTAAAATCAATTAATACAACTAGAATTTCCATTT
10  TTGTTTATCT----------------------------------------------------------------------
11  AGTATGTTTCGAGATTTTAATATCTTGGTGCAGTTAAATGTATTTTTAAATGCGTTAAGGTATTTTTTATTTTAGAAATT

  
0  ________________________________________________________________________________
1  TTATACAAGTGTATGTCAACAGGAAACAGAAAGTAATATTTTATTTAATAAATAATTAACCCTAGTAGGGGGAAAGTTAC
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  ACAGAAACATCAGCAACATGTA----------------------------------------------------------
10  --------------------------------------------------------------------------------
11  CAA-----------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  CTTTGAAAGGGATGGAGAAAATGGTATATCTAGCGAATGTGTGGCAAGCCGCTAGGCTGTCTTGAATTATGAAAGATTCT
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  AAGGCGATAGCCTGACTTGGATTTATTTTAGTTGTTTATTAAACAAAAGCTTTTAAGTCTATTTAAACGTTGACACAAAA
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  ATAAAAAGATGATATGCTAAAAATAGAAAATAAATTGAATATTTATACATCCTTCAGGGTTTGGTGAGATTCCATACCGG
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  TGGTAAAGCCCACGAGCCGCAAGGCAGATCTGGTGAAATTCCAGGGCCGACAGTTAAAGTCTGGATGAAAGAAGGAAATT
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  ___________________________________________AGGGTAGCCTCCTTTTAACCTATTATT_T_ATATTAT
1  ACATATACATTCTAATCAGTATACACTTGTATAGTTTTATACTTATGTAGCTAATTTAAGTTATATTATT-T-ATTTTAG
2  ---------------------------------------------------AAATTTGTGTGAATTTGTT-T-CTATTAT
3  --------------------------------------------------------------------------TATTA-
4  -------------------------------------------CATGAAGTACTAAAACTTGGTAATATT-T-TGTTTAT
5  -------------------------------------------AAAGTGGCATACTTCTAACTT--TAAA-T-GCAATCT
6  -------------------------------------------GGAGGAGGTGAACTGTTTAAAGTTATT-T-ATATTAA
7  -------------------------------------------CGAAACATGCCGATCACAAAGATAATC-TGATATTAT
8  -------------------------------------------ACAAACAGTGGCTTTATATCGATTCCAAT-ATTTTGC
9  -------------------------------------------CATGTCATATATACAAGAAAGCGCTTT-T-ATATTAT
10  -------------------------------------------ATTTTTTATTTTAGAAATACAAATTTG-T-ATATTCA
11  -------------------------------------------TGCTATTGAGTTGATGGGTTTTTCCAA-C-AGATAAG

  
0  AATGTAT_T__ATGACGTTATA_ATACAAATTTA___CATT_TTTTATTTTAGAA_ATATAGCAAA_AATGGGAA___TC
1  AATGTAT-T--AGG---TAAGA-ATAC---TTTA---CCCT-GAAAGAATTAATT-CTTTCAGGGT-TTTTTAGC---GA
2  AATCTAG-T--ATTACATTATA-ATAGCATTTTA-----TC-ATATAAATTA-AA-ATACATTTAT-TTACATAT---AT
3  ATTAGAA-G--ATGTCTTTTAA-A---AAAGACA---TCTT-TTTTATTTTAAAATATATAGCAAT-GTTCTAAAAATTG
4  AAAAAAT-TTAATGATCTTAGT-AT-------TA---TATT-T---ATTTTAGAA-ATATAAACAA-CA----AA---AC
5  G-TGTCT-T--TTGTCGTGGTA-G-----ATATA---GTTT-GTTGTTTTTGCTA-AGATAGAAAAGAATTCTTT---TT
6  AATGTAT-A--GTTTTAGATGA-AGATGGATTTA---AAAT-AAATAACTTATAA-CAGGATTAGT--------------
7  AATTTAT-T--ATGACTTTTTA-ACATGCATTAC---TGAC-TTTTCGGGTAAGC-TCCCAATGAT-TACAAGAT---GA
8  ACTCAAA-C--AGTGCTTTATA-ATACAAATTTA---CAGTATTTAATTTTATAA-GGATTAATAT-TGGCTCGG---AT
9  AAT-TAT-T--ATGAAAATGAA-TATTATGTCCG---CTTG-TGACGGACTATAG-CTATATAGAA-GAGACAAA---GG
10  AATGTATAT--TAGAAATTGCATAGATTAATATATGTCCTT-TTCCAATTTAGTA-ATGTTCAAAA-AATGAAAA---TT
11  AATGAAT-T--ATTCATTGAAA-ACTAAAAATAA---TATT-TTTAGTTGTAGAT--TGTTTTAAG-TGTGTCAA---TA

  
0  GATTACTCTAAAAATAACAGAAAGACCAA_GTTGT_TTCCAGTGACG__AAATAACGGGTCAAAAGATAGGGGGACTTTT
1  C-------------------------------------------------------------------------------
2  TGAAGAATCACTGCATATTATTAATTAAA-GTTTT-AATATAAGGGG--GAGTTTT------------------------
3  TGATAATATATATTTAACTGGTA--CTAT-GGTAT-GACCAGTAACATTAAATAAGGAGAGGTAAT--------------
4  TTTTACTTTATAAATACTAAGTTCCTTAC-TTTAT---------------------------------------------
5  GGTTTTAGCAAAAATAACAGAAAGAATAA-GTTTG-AGGAGATGGCA--AGA----------------------------
6  --------------------------------------------------------------------------------
7  AAGCGAGGATGTAATTT---------------------------------------------------------------
8  CAAATATAAGGAAAAATTAGATTTTCCAA-AAAGA-ATCTATAAAAT--GAATTTTTAATAAATAATTTTGCAAAACGGT
9  AGATATTTCT----------------------------------------------------------------------
10  TATGCAGTGATATT------------------------------------------------------------------
11  TATAA----AATAATTTTATAAAGATAAGTGTTATATTCCATTGTGC--AACTCCTATTGTATTTGTAAAATTACATGTA

  
0  CTG_____________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  GATTTCATGTAGAAATTTGATTGGGTTATTATTTTTATAGAGTTTGTTTATAAAGAAGAATAACGTATTTTTTTTAAGTG
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  AATTCACTGTAAGTAAAGTGGAAAATATGGAAAAAGGAGTATGCAA----------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  AAATCGTTTCCTTAACTATTTATAGTTTAATCATCTAGTAGCTAAAATTCGAGGTTGTTTCAAAATATTAGAGTTGTTGA
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  AAAATTCCATAGCAGCGATTAACAGAGCTGCTTTAATCGACCATTTCATGAAGCAGAAACAAGATGGAGAATTCATTTTT
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  TAACAACTCTATTCTTTAATATGATGAGTAATAACAAGTTTTGGTTCTAAACTTAACTTATTTTTATTGGATGTTGTCTA
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  AAAATACTAAATCTTTTGTTGCTTTAAATCTGTCCCTTTAATTGAGTTTTTAGGAAAAAAGTTTGCTTTTAACTTACATA
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  ___________________________________
1  -----------------------------------
2  -----------------------------------
3  -----------------------------------
4  -----------------------------------
5  -----------------------------------
6  -----------------------------------
7  -----------------------------------
8  GTTTAAAAGAAAAAATCTATAAGATTGTCGATTTA
9  -----------------------------------
10  -----------------------------------
11  -----------------------------------

Complementary Intergenic Regions

IGR  +  3345176  3345356  ()  0  yurK