BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (- 3013417 to 3013585) circular

Term (99.99)%  -------------------CTTCACCTGAAATTTAGGTGAAG--------------------------------------
Islands  A.GAA.,,,.AC.A.G,,,C..CACC.G,,,...AGG.GAAG........A.,,,,GGC..G,,,,,,CG,,,CG.AC..
5'-   ATGAATAAATACTATGAAACTTCACCTGAAATTTAGGTGAAGTTTTTTTTATAAAAGGCTTGAAAAAACGAAACGTACTT
       |         |         |         |         |         |         |         |    
       3013580   3013570   3013560   3013550   3013540   3013530   3013520   30135
       |         |         |         |         |         |         |         |    
3'-   TACTTATTTATGATACTTTGAAGTGGACTTTAAATCCACTTCAAAAAAAATATTTTCCGAACTTTTTTGCTTTGCATGAA
Islands  .AC..A...A.GA.AC...GAAG.GGAC...,,,.CCAC..C,,,,,,,,.A....CCGAAC......GC...GCA.GAA
Term (86.60)%  -------------------GAAGTGGACTTTAAATCCACTTC--------------------------------------

  
Islands  G..,,,G.G.A.ACA.AC,,,,.G.A.....A..,,,.A.AA...A.....A.AC,,,,.AG,,,CACGG..GAGAGGGG
5'-   GTTAAAGTGTATACATACAAAATGTATTTTTATTAAATATAATTTATTTTTATACAAAATAGAAACACGGTTGAGAGGGG
       |         |         |         |         |         |         |         |    
  10   3013500   3013490   3013480   3013470   3013460   3013450   3013440   30134
       |         |         |         |         |         |         |         |    
3'-   CAATTTCACATATGTATGTTTTACATAAAAATAATTTATATTAAATAAAAATATGTTTTATCTTTGTGCCAACTCTCCCC
Islands  CAA...CACA.A.G.A.G....ACA.,,,,,.AA...A.A..,,,.,,,,,.A.G....A.C...G.GCCAAC.C.CCCC

  
Islands  A.....A.C
5'-   ATTTTTATC
       |   
  30   3013420   
       |   
3'-   TAAAAATAG
Islands  .,,,,,.AG

IGR  -   3013417  3013585  ()  19  argG argH ytzD

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 - 3013417 3013585 argG argH ytzD [COG0137 COG0165 -]
1 Mycoplasma penetrans B/C NC_004432.1 - 228443 228708 MYPE1810 [COG1481]
2 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 + 1402787 1402914 rpl21 CAC1258 rpl27 [COG0261 COG2868 COG0211]
3 Oceanobacillus iheyensis B/C NC_004193.1 - 806484 806618 OB0756 OB0755 OB0754 [COG3844 COG1878 COG3483]
4 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 - 2367981 2368161 addB addA [COG3857 COG1074]
5 Salmonella typhimurium LT2 P-g NC_003197.1 + 826324 826491 STM0763 [COG0583]
6 Clostridium tetani E88 B/C NC_004557.1 - 2691184 2691411 CTC02532 [COG0057]
7 Borrelia burgdorferi Sp NC_001318.1 - 101340 101524 BB0103 [COG2236]
8 Ureaplasma urealyticum B/C NC_002162.1 - 400608 400833 UU352 [-]
9 Thermoplasma volcanium A NC_002689.2 - 246672 246962 TVN0234 [-]
10 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 - 737197 737278 CAC0632 [COG0637]
11 Yersinia pestis strain CO92 P-g NC_003143.1 - 3461855 3463320 wbyK [COG0438]
12 Clostridium perfringens B/C NC_003366.1 + 904284 904692 CPE0727 [COG1396]
13 Methanococcus jannaschii A NC_000909.1 + 1284121 1284334 MJ1335 [COG0279]
14 Borrelia burgdorferi Sp NC_001318.1 - 108171 108306 BB0109 [COG0183]
15 Borrelia burgdorferi plasmid lp28-1 Sp NC_001851.1 + 1 466 BBF01 [-]
16 Borrelia burgdorferi Sp NC_001318.1 + 569140 569277 BB0557 BB0558 BB0559 [COG1925 COG1080 COG2190]
17 Haemophilus influenzae Rd P-g NC_000907.1 - 23940 24266 HI0021 HI0020 [COG3697|COG1767 COG0471]
18 Campylobacter jejuni P-e NC_002163.1 - 490394 490473 flgB flgC fliE pbpB [COG1815 COG1558 COG1677 COG0768]

0  ________________________________________________________________________________
1  T-------------------------------------------------------------------------------
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6  --------------------------------------------------------------------------------
7  TAAATTTTAGTTTTGGGTTAAGAGT-------------------------------------------------------
8  AAAAGATGATTTCACATTTAAAATGCTATCATCTTTTTTTGTTCCATGTAAATATAAATTATTTTTATATTTA-------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  ATAAGACTATCTCACTATATATTTCTCTATATAGCATCGCATTATGGATTGGTTTTTTTGGGTGTATCAATACGGGATTT
12  ATAAAATGAGAGTGAAAAAATAAACAAAATAGGCGTGTATCAAAATATAATAAAACTTACAGCTATTTTTAATAGGTATT
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  AGCTCCAATGAGCTTACATCTACTATTACAAATTTAATTTCAAATTTTTTTAATGAAAATGAGTCTTGCAAAAATTTGTA
16  --------------------------------------------------------------------------------
17  AATCAGCATTACAAGCGATCTACTTTCA----------------------------------------------------
18  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
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11  TTTAGTGGTGATTTAAAAGGAGTTAAAGTATCTCTCAATAATTATGAGTTATTTGTCATTGCTATTATTTATCAATTTAT
12  AAATTAGCTTTAGAATATTTGTAAGTTTTATGAGAAATTAATTTGATACATGCCTTTTTAGTCGTTCAATTATAATCTTT
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  TAATCTAAAATTATACATTAATGCAAACCTAAAAAACTGGGAATCTATAAAAATACTTGTAAATTGCAAAAACAAATTAT
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------

  
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11  TATTTTTCTTTCTTTTCTCATTTTTTTAATTGTGACTCGTTATAAATTCACTTTAGGTAAGTATTGTGTTGAAATTGTTA
12  AATATTTTAA----------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  ATCTAAAATTTTTTTTCTTGATTAGGGTAAAAAATTCTTTATTAATTTCTAGCCTTTCGTTAAGGTTTTGTTTTAGATTT
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------

  
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11  ATTTTAAATTTTCAATACTATTATTTGTTGTTTTAATAATGCATATTGCTTTTGTTTCATATACCGGAGTTGGTAAGGTT
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  TGTTCCCAATTAGACATATCTTGTTTTCAATTCTTTTCTATGTTACCAATCTTAGCAGTAAATTCATTTTTAA-------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------

  
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11  TTTGGAGGAAATACTAATATCTTTAGTCCCATATTTTCTATTACAGCACCCAGTGCTATATTCTTTTTCTATTACCTTAT
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------

  
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11  TGTTAGAGAAAATGCCGGAAAGATTTTTTTTTATTAATGTGCTTCTATTTGTATTACTTGAGTTATTAAAAGGATGGAGT
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------

  
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11  GGTTTTTTACTTACAATTTTTATGTTCGAAATTTATTTTTATATAAAAAGAAACTCAAGTAGTCGTCTATTGAAAATTCC
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------

  
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11  ATTTTTATTTTCTATAACATTACCATTTATTCTACTGTTATCTGGTGGTTTTTTATATAAGCATATTTATATACTTAAAA
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------

  
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11  ATGACATAAGGGGAATTAGTGTTGTCAGTGATAATTTAGAATATATAGATGCAGTCGAAATGTTATCTGATAGACTAACT
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------

  
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11  AATTTCTCGACAGCAGCTGGTGTATACTCTCGATATGACAGCGTAGTAGATATCGCAAAGTTGCAAAATGAATATGCAGA
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------

  
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11  GATAAAAGGTTTTTTTAGGCCTCTTGTACCAAACTTCATTATGGAGAACAAAAGTTTTAGCGCACTGAATAATTCTGCAA
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------

  
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11  TGCTTGCATTTTTCCCTGACTATAGAGATGATTCAAGTGTCGATTTAGGATTCGTAATGTATTATTATGTCCTATTTGAA
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------

  
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11  TCAAGAGTTAGTGATGCATTTTTATCGTTGTTTTTATCGTTTTTTTTATGTGTGGTTCTCAGTGTTATTTTTAAAATATT
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------

  
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11  GTCTAAAAACAATCAAAATATAAATTTATTGATTTTTATAATGATATTTTCTTTGCTTTATACATCATCTAATGAAATGG
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------

  
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11  TCTTCGCAAGAGGGAATATAATTATTTTATTTTATATACCTATGCTTTTTTTATTTGGGATAGCTAGGGTGAAAATTAAA
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------

  
0  __________ATGAATAAATA_CTATGAAACTTCACC_TGAAAT_TTAGGTGAAG_TTTTT__TTTA__T_AAAAGGCTT
1  ----------ATAATTATATAACTTTCATAATTTAAA-ACAAAT-T-AGCTCTAA-TTTGT--TTGAGTT-GAAAGTGTA
2  -----------------------------------------------------------AA--AATT--C-TTTACAAAG
3  ------------------------------------------------------------G--ACAA--C-CTCCTACAA
4  -------------------TA-GAGATGCTATATATA-TAAGCT-CAACTCTGGA-AATGT--TTTA--T-A----GCTT
5  --------------------------------ACTCC-CTCCAG-TGCTATGTTG-CATTG--TTTT--A-TCCATTGAT
6  -----------------------------------------------TAACTATA-TATTA--TTTG--T-AAAATGAAT
7  ----------TGATCTTAGCC-CTTTTTTGTTTTACA-TATAAT-T---GTAAAG-CTTTTAGATTG--T-AAT-GATTT
8  ----------AAGTTCAAATA-TTAAATAAATTTAGA-AAAAAT-TTC--TAAAA-TTTTA--TATA--A-AAAAA---T
9  ------------------------------------G-TACAAT-TTAT---AAT-TTATT--TTTA--TGAAAAATATT
10  --------------------------------------------------------------------------------
11  TCAGTTGCCATAAAATAAATA-TTA----ACTTTTT--TGTTTT-TTGTATGATCATTTCA--TTAA--T-TACATGCGA
12  ----------TGGATAACTTA-AGAGAAAATAATATT-TTGTAA-AATTTTCCTA-AGGAT--AATA--T-TAAAG-CTA
13  --------------------------------------------------------------------------------
14  ---------------------------------------------------------------------T-TTAAAATTA
15  ----------CAGTATCAATC-TTA-GAAACAAAATTGTCAAATCTTATGTCACA-TTTGT--TTTT--C-TAAATTTTC
16  -----------------------------------------TTG-TTAGAATAAG-TTTAA--TTAC--T-AT----CTT
17  ----------ATAGCCAAAAT-TAACTCTTGTCTTCC-CATGAT-TATCAGGAAA-GGAGC--CCAA--A-GAGTTGAAA
18  --------------------------------------------------------------------------------

  
0  GAAAAA__ACGA_____AACGTACTTGT_TAA_AGTGTATAC_AT_A_C___A_A___AATG_T_ATTTTTATTAAAT_A
1  GAAAAT--A----------------TTT-TAA-AGC--AAAA-AG-G-C---TTA---AATT-T-AAAC--ATTAAAT-A
2  TTTAAG--TGAT-----ATGGTACAATG-GCA-CATGTAGAC-CGCA-C---A-A---AACG-G-GTTTTTATTAAAC-A
3  TGTCAA--TGAT-----ACGAAATCACT-GAC-ATTATGTCA-TT-G-A---C-A---CTAT-G-TCAGTTATTAAAT-A
4  TATAAT--AATA-----AAAATA------TAC-ATTGCAAAC-TT-TGC---A-A---TGTA-T-ATTTTTATTGTAT-A
5  CACATT--TTCA-----TGATATTCGTA-TTC-ATTGTAGGA-AG-G-A---A-A---TATG-TTATTTTTATTAAATGA
6  ATAAAT--AT-A-----AATGCCCTTAT-CAA-A-TATAGAC-TT-T-G---A-T---AGGG-G-TTTTTTAGTACAT-A
7  TATTTT--ATGC-----AAA-TATTTGT------GTGTTAAT-TT-G-C---A-AGTTAAAA-T-ATTTTGATTAAAT-A
8  AAATATTTTCTG-----TACATTTTTGA-TAT-TCT-TAAAC-TG-A-A---A-A---AATA-T-ATTTTAATTTAATTA
9  TAAAA-----GT-----AAAGCCATAGA--AA-ACTATGTTCGATGA-CCTTA-A---ATAG-T-GTTTTTATGATAT-T
10  ----------------------------------------------------------------------------AT-A
11  TAATTA--ATGATTTTAAATATATTTAT-TTTTAATGTCTAA-GT-T-A---T-A---AATG-T-ATTTTTAATAAAT-T
12  AAAAAT--AGCA-----AGTATAATAAT-GAC-CATAGATATTAT-A-A---T-T---AAGAAT-ATTTTTATTAAGT-A
13  -------------------------------------CCTCT-CC-C-T---T-T---AGTA-A-ATTTTTATTAAAT--
14  TAACAT--TTTA-----GCTTGTTTATT-AAA-TAATTCAGG-TT-A-A---A-T---AGTT-T-ATTTTTATTAAAT-A
15  TAAATC--TCTA-----TATGTAAATTT-ATA-TATCAACTT-AT-A-C---T-A---TTTT-C-CCCTTTTTGAAAT-A
16  TATTAT--GCTA-----TATTT-CTTATGTAA-AGGGAATAT-AT-A------------ATT-T-ATTTTTATGTATT-A
17  GGGACT--CAAT-----TAGCTCTTTCA-GCT-TTCGCCAGC-AC-C-A---T-A---TAAA-T-GGAAAGAGTTAAG-A
18  -----------------------------------------------------------------------------T-T

  
0  TAA____TTTATTTT_TAT_A______CA_AAATAG_________AAACACGGTTGA____GAGGGGATTTTTATC____
1  TAA----TTTATTTTCTAA-C------CACAAATGG---------ATAAATAAATCT----AATTTAGTAAAAAAATAAA
2  CAA----TTTATTGTGTAC-C------CC-TATTGG---------CGAGGCCGTAAAT---GAGGAGGTGTTTGTTA---
3  TAA----TTTAACC---AT-A------CA-ATAAAT---------AAACAATTCAAG----TTAAAAATTATAGTTCCAG
4  TAA----TTTATGAT-GAA-A------AC-AATTAT---------TTTAAGGATATA----GGTTGCTATATTTTATAGA
5  TAA----ATTTTATT-TAT-AGTAGTGGA-AAATAG---------ATGGAAATTAGA----CAATTAGAATATTTTGTAA
6  TAA----TTTCTTAT-TAT-A------CT-AATTAT---------AATGAATACTAA----TTCCATTCATAGAAAAAAT
7  AAT----TTTATTGT-TATTA------GG-AAAGAA---------TAAAAGGAATAA----GTTTGAATT----------
8  TACTTGCTTTATTTT-TAT-T------AA-AAAAGA---------TGGAGGTTTT-------------------------
9  TAT----CCTATTAT-TTT-A------AA-AAATGGCGTTTCCTTAAACAATGTTGA----GATTGGAGTAAATCATCGT
10  AAA----TTTATTTT-TAT-A------CA-ACCTGA---------GGCTGAATCACC----ATCGATTCAGCCTTTGATT
11  TAA----TTTTTATA-TAT-T------AT-AAGTGA---------GTGAGTTATATT----TTGCGATTAGATAATAATT
12  TAA----TTTATAGC-TAA-A------AG-CTGATG---------AATAAAGGGATG----CAACTAATAGTTGACAAAA
13  TAA----TTTATGTT-ACA-A------TT-ATATAG---------TATTAATATAGT----AGGTATAAATAATTTGGTG
14  AAC----TTAGTTTT-TAT-A------TG-ATCTAT---------TGTATTGTATAA----TTCAATAAGTTTATTAAGA
15  TAA----TTTATTTT-TAT-T------TA-ATTTAG---------GAGGAACAAC-------------------------
16  TAA----TGTAAAAA-GTT-A------AT-CAAAAA---------AAACAATATTCATAATGAGGGGTTTCTGTACTT--
17  AAA----TTTATTTT-TAT-A------CA-AAAGAG---------CGGTCAAATTTT----GCAGCATTTTTTTACGACA
18  TTT----GATATTTT-TAT-A------CA-AAATAG---------TTAAATTGGAAC----AGTATTTGCTTGTTAATAT

  
0  ________________________________________________________________________________
1  TATTTAAATAATATTAATATTACTATTTATTAGGGTGTAAAAACTAATTTACATTAACCAAATTTAAATTAAGAATTAAA
2  --------------------------------------------------------------------------------
3  GGGGAAACAT----------------------------------------------------------------------
4  ATGATGGAAAAAGGGGTGGATAAGT-------------------------------------------------------
5  GCGCTTCT------------------------------------------------------------------------
6  ATATATAAAAAGTTTAGTGAATGGATATGATTTTGATATAATAATAATATAAACAGATGTAGTTGAAAACAATAAGCATA
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  ATTAAATCCATGGATGCCAAACAAAATTTGCTAGAAAGCTGACATTCTTGAGTTAAGTTCAGCCACCCAGATCAATTCTA
10  TTGTTTAATAGGAGAGTATACAACT-------------------------------------------------------
11  TATTAATTTCTTAACACTACGTTTGATGTTTAGTAGTGAACTATATTGAGTATTAATTTGCAAGTTAATTATAGGTTCTC
12  AGAAATTGTTAGTTGGTAGACCAATATATAAGAATTTTGTATAGTTTTCCATGGAGGTGAAAAAT---------------
13  ATGATTATGAAAAAGTATTTCGAGGAAAGTGCAAATGTGAAACTAAAATTCATTGAAGAAGATGAGGAAAAGTTAAAAAA
14  CTTTAGGAGTAATT------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  TTCTCTACAGAGGGTTCAAAAATTTCACTTGAAGCATTGCTTAATGCTCGAGAGGAACGTGCAATTTTACAACAACAGCT
18  TAAAAATTATAAAAAGGATAAAAA--------------------------------------------------------

  
0  _______________________________________________________
1  TAAATCAATTTCTAGGAAAAAT---------------------------------
2  -------------------------------------------------------
3  -------------------------------------------------------
4  -------------------------------------------------------
5  -------------------------------------------------------
6  GGAGGGATAAA--------------------------------------------
7  -------------------------------------------------------
8  -------------------------------------------------------
9  TTTCCAAAATGTTATCAAAAAGATTAATATTTAAAGATTCAATGTTTACCTATAT
10  -------------------------------------------------------
11  T------------------------------------------------------
12  -------------------------------------------------------
13  AGCTATTGAAGTCATATATAATGCATTAAAAAATGGAAATAAAATTTTAAT----
14  -------------------------------------------------------
15  -------------------------------------------------------
16  -------------------------------------------------------
17  TATAACACAATATGGACAAACCTTACTTTGCATCACTTTAACTGCT---------
18  -------------------------------------------------------