BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (- 2878234 to 2878396) circular

Islands  .AGGAA.GC..C....CCC.GAAGC.....C.AA.A.AGCA.AAGAA....,,,,.C.G..CACA....G.G,,,G,,,C
5'-   TAGGAATGCTTCTTTTCCCTGAAGCTTTTTCTAATATAGCATAAGAATTTTAAAATCTGTTCACATTTTGTGAAAGAAAC
        |         |         |         |         |         |         |         |   
        2878390   2878380   2878370   2878360   2878350   2878340   2878330   2878
        |         |         |         |         |         |         |         |   
3'-   ATCCTTACGAAGAAAAGGGACTTCGAAAAAGATTATATCGTATTCTTAAAATTTTAGACAAGTGTAAAACACTTTCTTTG
Islands  A.CC..ACGAAG,,,,GGGAC..CG,,,,,GA..A.A.CG.A..C..,,,,....AGACAAG.G.,,,,CAC...C...G

  
Islands  .A.G..A.AA..A..A.,,,.AA.GAG..C.A.G..AGAA.GA..A.,,,..AAGA..GGG.G..GGGGG.G.AA..AGA
5'-   TATGTTATAATTATTATAAATAATGAGTTCTATGTTAGAATGATTATAAATTAAGATTGGGTGTTGGGGGTGTAATTAGA
        |         |         |         |         |         |         |         |   
  320   2878310   2878300   2878290   2878280   2878270   2878260   2878250   2878
        |         |         |         |         |         |         |         |   
3'-   ATACAATATTAATAATATTTATTACTCAAGATACAATCTTACTAATATTTAATTCTAACCCACAACCCCCACATTAATCT
Islands  A.ACAA.A..AA.AA.A...A..AC.CAAGA.ACAA.C..AC.AA.A...AA..C.AACCCACAACCCCCACA..AA.C.

  
Islands  GCG
5'-   GCG
     
  240   
     
3'-   CGC
Islands  CGC

IGR  -   2878234  2878396  ()  14  hemA hemX

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 - 2878234 2878396 hemA hemX [COG0373 COG0755]
1 Thermoanaerobacter tengcongensis strain MB4T B/C NC_003869.1 + 89707 89886 SirA2 TTE0084 [COG0425 COG2391]
2 Staphylococcus epidermidis ATCC 12228 B/C NC_004461.1 + 1551170 1551279 SE1502 [-]
3 Streptococcus agalactiae B/C NC_004116.1 + 598097 598199 SAG0606 [-]
4 Listeria monocytogenes strain EGD B/C NC_003210.1 - 2872785 2872931 kat [COG0753]
5 Clostridium tetani E88 B/C NC_004557.1 + 1254788 1254971 CTC01175 [COG2391]
6 Staphylococcus aureus subsp. aureus N315 B/C NC_002745.1 + 1331873 1332069 katA [COG0753]
7 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 + 369530 369711 argF/I [COG0078]
8 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 Fus NC_003454.1 + 1480880 1480998 FN0821 [-]
9 Methanococcus jannaschii A NC_000909.1 - 88518 88560 MJ0093 [-]
10 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 - 2072246 2072360 CAC1955 [COG5515]
11 Streptococcus pyogenes B/C NC_002737.1 - 1405521 1405630 SPy1691 [COG1755]
12 Borrelia burgdorferi plasmid lp28-2 Sp NC_001852.1 - 2858 4207 BBG04 [-]
13 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 + 318760 319050 CAC0279 [COG0760]

0  ___________________________________________________________________TAGGAATGCTTCT
1  AAAAACTCCCCCTGTTTGTTAAAAAGCTATCGCAATATAACGTTTAGTTTT----------------ATTATACTACAAA
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  ATGATAAAAA---------------------------------------------------------GCAATCTCTCCTA
5  AACTATAAAATAATTAGTGTATACTATAAAAGCTGTTGATAAATATAAATTGTCAACAGCTTTTACTATATGATATAGCA
6  ATTTAGTCTCCCATCTATTTAAATATACCCATTATTGTAAGCTTTTTAAG-----------------TGTACTATTCAAT
7  A------------------------------------------------------------------TATTCAAAGCTAT
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  -------------------------------------------------------------------------AATATCA
11  GGAACTACAAAGATTTAGCCATA--------------------------------------------ATTCGCTAAATCT
12  AGAAATTGTAGGTGGAGTATTCTTTGTTATTTTTAGATAAAATTATAATTTGCCTAAC---------TCTCAATATTTAA
13  GTTAACCACCCTTATTATT------------------------------------------------TATTATTAAAGAT

  
0  TTTCCCTGAA_GCTTTTTCTAA__TATAGCATAA_GA__ATTTTAAAATCT_____GTTCA_CATTTT___G______TG
1  GTTTGTTATA-AGTAAAACTAA--TATTGCATAA-GA--ATTTCAAATGATAAATGGAGAA-AATTTTATAG------TA
2  ---------------------------AACATAA-TT--AGTT-AAGAGGT-----CTTTA-TTATTA---A------TT
3  --AAATTTTT-AGCAAGAATCG--CCTGATACTA-GC--TGTTCTTGCTTT-----TTTAT-TTGCTA---A------AG
4  AGAGATTGCT-TTTTATAAGCC--TTTTAGTTGA-AG--TTTGTCTCTCCC-----TTCTT-TAAAAT---A------TA
5  ATGGACTGAA-ACTATA-CAAA--T---GCA-AA-GC---TTTTAAAATTT-----ACTAA-ACCTTT---T------TA
6  AACTATTTAG-TACTGTAAAGC--GAAAAAATTA-AA--ATTTTCTGATTT-----TTTAATCATCTT---G------AG
7  GCATATATAA-AAAACGGCTAA--ATCTTAGTAT-AG--GGATTTCTTGTT-----TAGAG-GAAATC---C------CT
8  ------------------------------------------------TTC-----TAAAC-TATTTT---G--------
9  --------------------------------------------------------------------------------
10  TATCCATCAA-ATTATTTTTA---TAAAGTATATTGA--GAGTCAAAA--------GATAA-TATT--------------
11  TTTTTGAAAACGGTTTGACAAAGGTTTATCATTT--A--GCTATAATCTTT-----ATTAG-TGTTTT---G------TG
12  TTTTTATGAA-T-TTTTTCATA--TTTAGGTGGA-GATGAATTTATAA-----------CG-CAAGTT------------
13  TTTAGTAAAT-CATTTTTATTA--TATACTATA-------TTACATAATGA-----GTTCAACATTAT---GTACATGTT

  
0  AAA_GAAACT_A___TGTTATA_ATTAT_____T_ATA_A_A_TA__ATGAGTTCT___ATGTTAGA___ATGATT_AT_
1  AAATGAAACT-AGAATGTTAAA-ATGAT-----A-ACA-A-AATA--AGGAGGAAT---GTAAA----------------
2  AAT-TTAATT-T---TAC-ATATATAAT-----T-TTA-A-A-TA--GTGTG-------ATGTTATA---ATTATTTAT-
3  AAA-GATATAGA---TGTTATA-ATTAA-----T-AAA-A-A-TA--ATAAGGAGA---CACATT---------------
4  AAT-AGTATC-A---TTTAATA-ATTAT-----T-ATA-A-A-TA--AAAA-TGAT---AT---AGA---ATTGTT-AT-
5  AA-------T-A---TGTTATA-ATTAT-----T-AAA-A-G-TAAAATAAGAATT---TTCAAAGG---ATGATT-AT-
6  CAT-GTTTAA-T---TGTAATT-TTGATGGGGTT-AAA-TTA-TA--ATATGTATT---AAATTATA---ATTATT-AT-
7  ATA-TTTTTA-T---CATAAAG-CATAT-----TGATA-A-A-TT--ATTTGTTTC---ATGTTATA---ATTATT-CA-
8  --A-TAAAAT-A---TGTTATA-ATTAT-----T-ATAGA-A-TA--ATATATACTTGGAGTTTAATCCTATTATT-TT-
9  ------ATTA-T---TTTTATA-ATTTT-----T-ATA-A-A-TA--ACATTACGA---GGGAGAAA---C---------
10  -AC-TATACT-A---TGTTATA-ATT-------T-ATA-A-A-TA--ATGTGGAGT---ATATTTAT---AGGAGG-AA-
11  AAA-GAAACT-A---TTA--------------------------------------------------------------
12  -AA-AATATA-A---TATTATA-ATTAT-----A-AAA-A-A-TA--ATGAGTGCT---A----ATA---AAGCTT-AT-
13  AAA-GAAACT-A---TGTTATA-AGCGT-----A-AAA-A-A--A--ATGC--TGT---ACGTTTTT---AC--TT-ATG

  
0  AAATTAAGATTGGGTGTTGGGGGTGTAATTAGAGCG____________________________________________
1  --------------------------------------------------------------------------------
2  AAATAGTAAAAATTTAAAATTGAG--------------------------------------------------------
3  --------------------------------------------------------------------------------
4  GGAGGTATATACAT------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  AAATTGTGGAGGG-------------------------------------------------------------------
7  AAAATAATGAATAATTATAACACAAGTAAGCGGTTATAGATTAGGGGGTTCGT---------------------------
8  AAA--AAGAAAGGGGAGGGGACAAAATGAAAAAGGTTTTATTAGTT----------------------------------
9  --------------------------------------------------------------------------------
10  AGTAC---------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  AAGTGCAGAATATATCCCAACACCAATCAAAAAAAATATTTTTCAAAAGTATTTGGATGTGTAAGATTTTTGTATAACAA
13  AAATGATGAAATTGACGGAATAACATTAATAAAGTAAAAAATGTAAGTAAAATTATTTAATATACATTATTATGTGGATA

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
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5  --------------------------------------------------------------------------------
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9  --------------------------------------------------------------------------------
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11  --------------------------------------------------------------------------------
12  AATGTTAAGTGATAAGAAAGATTATTATAAAAATAATGGACAAAATCTTATTACCTATCCAAGTAAATATAAAGAAGAAT
13  AAAGTTACTTTTAGTGTTATTATTAAGATTATAATAGATAATTTTTTTGATTAAAGGAGATTTCAA--------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
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11  --------------------------------------------------------------------------------
12  TTCCTTTTTTAAAGGAAGTTGATAGTTTGGCTCTTTGTAGTGCGTGGATCGACTTAAATTTTGCGTATAGTAATTTTTTT
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
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11  --------------------------------------------------------------------------------
12  AGAGAAATTAAAAAAGGAAATAAAATGCAAGGATTTCCTAAATATAAAAGTAAGAAAAATAGGCAAACTTATAGAACTAA
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
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11  --------------------------------------------------------------------------------
12  TAATCAAAAAAACTCAATAAGAATAGAAAATGGTTATAAAAACTACCTAAAATAGGGTTTATAAAGTTGTGTCTACATAG
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
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12  GTGCATTAAAGATAATGAGCTTGTTAAAAATGTAGTAGTAGAAAAAGATACTGATGATAAATATCATATTTCAATAACAG
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
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12  TTGAGTGCTTAGATACTAAAAATAACAATGAAACTAAAGGTGATAAAGAAGAGATAGTTGGTATTGATATGAGTATGAAA
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
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5  --------------------------------------------------------------------------------
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12  CACTTTTTAGTAAGTAGTGGGGGTGAGAAAATCAATCATCCTAAATATTTATTAAAAAATGAAAATAAACTTAAAAAATA
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
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12  TCAAAGAAAACTATCAAAAAAGCAAAAAGGTTCTATTAATAGGGCTAAATCTAGATTAAGAGTTGCTAAGCTGCATAAGA
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
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11  --------------------------------------------------------------------------------
12  AAATTTCAAATCAAAGAAAAGACTTTTTGCATAAATTATCTTATTACTTTGTATCCAATTATAAAAACATAGTAATAGAA
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
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6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
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11  --------------------------------------------------------------------------------
12  AATTTATCAATTAAAGGCATGCAAAAAGGAATGTTTGGAAAAAGTATTAATGATTTAGGATGGTCTGAGTTTGTAAGACA
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
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5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
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9  --------------------------------------------------------------------------------
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11  --------------------------------------------------------------------------------
12  ATTATCATACAAATCAGAGTGGTATGGATCCTCTTTGTATAAAGTAGATAGAGATTTTCCATCAAGTAAACTATGCAGTA
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
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5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
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8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
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11  --------------------------------------------------------------------------------
12  GTTGTCACATTAAAAATACGACTCTAAGATTAAGTGATGCTAAGTGGACTTGTAGTAGTTGTAACACTTTGCATGATAGA
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
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5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
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8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  GATATAAATGCAAGTCTAAACCTTAAGGCTTATTCTTATAAAGAAATAAAAACTAAGGCAGGAACTGCCCGAAGTAAAGC
13  --------------------------------------------------------------------------------

  
0  __________________________________________________________
1  ----------------------------------------------------------
2  ----------------------------------------------------------
3  ----------------------------------------------------------
4  ----------------------------------------------------------
5  ----------------------------------------------------------
6  ----------------------------------------------------------
7  ----------------------------------------------------------
8  ----------------------------------------------------------
9  ----------------------------------------------------------
10  ----------------------------------------------------------
11  ----------------------------------------------------------
12  TTGTGGACCATGCTCTAGTGGATGACCGTTCTTTTAGAGCCTAAAAAGCTATCATGGG
13  ----------------------------------------------------------

Complementary Intergenic Regions

IGR  +  2878234  2878396  ()  8  ysxD