BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (- 2817075 to 2817455) circular

Islands  CAGAGAACCCCAA.CCCA..A..A.AA.AG,,,..GAG.ACA.AGC,,,.GA.G,,,GA...GAACCAA.AA.GGAGAAG
5'-   CAGAGAACCCCAATCCCATTATTATAATAGAAATTGAGTACATAGCAAATGATGAAAGATTTGAACCAATAATGGAGAAG
       |         |         |         |         |         |         |         |    
       2817450   2817440   2817430   2817420   2817410   2817400   2817390   28173
       |         |         |         |         |         |         |         |    
3'-   GTCTCTTGGGGTTAGGGTAATAATATTATCTTTAACTCATGTATCGTTTACTACTTTCTAAACTTGGTTATTACCTCTTC
Islands  G.C.C..GGGG..AGGG.AA.AA.A..A.C...AAC.CA.G.A.CG...AC.AC...C.,,,C..GG..A..ACC.C..C

  
Islands  AG.AGG.CAGA..GCA.GA..AGAGAGGAACCCGCCCCAGGC.G,,,GCGGA.CCCA..GCG.C...C.CG,,,CAACAC
5'-   AGTAGGTCAGATTGCATGATTAGAGAGGAACCCGCCCCAGGCTGAAAGCGGATCCCATTGCGTCTTTCTCGAAACAACAC
       |         |         |         |         |         |         |         |    
  80   2817370   2817360   2817350   2817340   2817330   2817320   2817310   28173
       |         |         |         |         |         |         |         |    
3'-   TCATCCAGTCTAACGTACTAATCTCTCCTTGGGCGGGGTCCGACTTTCGCCTAGGGTAACGCAGAAAGAGCTTTGTTGTG
Islands  .CA.CCAG.C.AACG.AC.AA.C.C.CC..GGGCGGGG.CCGAC...CGCC.AGGG.AACGCAG,,,GAGC...G..G.G

  
Islands  .CCGGAGG...CC.GC.GAACGCG.GAA.AACGCCA..AGGCAG.GAACG.GAACC.GCG..,,,GGA.CGAGCGGGAA.
5'-   TCCGGAGGTTTCCTGCTGAACGCGTGAATAACGCCATTAGGCAGTGAACGTGAACCTGCGTTAAAGGATCGAGCGGGAAT
       |         |         |         |         |         |         |         |    
  00   2817290   2817280   2817270   2817260   2817250   2817240   2817230   28172
       |         |         |         |         |         |         |         |    
3'-   AGGCCTCCAAAGGACGACTTGCGCACTTATTGCGGTAATCCGTCACTTGCACTTGGACGCAATTTCCTAGCTCGCCCTTA
Islands  AGGCC.CC,,,GGACGAC..GCGCAC..A..GCGG.AA.CCG.CAC..GCAC..GGACGCAA...CC.AGC.CGCCC..A

  
Term (100.00)%  --------------------------------------CTCTCGTCCCTACTATCATGTATAGTAGGGGCGGGAG-----
Islands  A.GAACG.A..CCAAC.AGGG.GGCACCACGGG.A.AAC.C.CG.CCC.AC.A.CA.G.A.AG.AGGGGCGGGAG.....
5'-   ATGAACGTATTCCAACTAGGGTGGCACCACGGGTATAACTCTCGTCCCTACTATCATGTATAGTAGGGGCGGGAGTTTTT
       |         |         |         |         |         |         |         |    
  20   2817210   2817200   2817190   2817180   2817170   2817160   2817150   28171
       |         |         |         |         |         |         |         |    
3'-   TACTTGCATAAGGTTGATCCCACCGTGGTGCCCATATTGAGAGCAGGGATGATAGTACATATCATCCCCGCCCTCAAAAA
Islands  .AC..GCA.AAGG..GA.CCCACCG.GG.GCCCA.A..GAGAGCAGGGA.GA.AG.ACA.A.CA.CCCCGCCC.C,,,,,

  
Islands  ..CA....CA.CA..AACGA.CA..GGA.A....A.AAGGAA.ACA.AAGGAGG.C.ACC.
5'-   TTCATTTTCATCATTAACGATCATTGGATATTTTATAAGGAATACATAAGGAGGTCTACCT
       |         |         |         |         |         |     
  40   2817130   2817120   2817110   2817100   2817090   2817080   
       |         |         |         |         |         |     
3'-   AAGTAAAAGTAGTAATTGCTAGTAACCTATAAAATATTCCTTATGTATTCCTCCAGATGGA
Islands  ,,G.,,,,G.AG.AA..GC.AG.AACC.A.,,,,.A..CC..A.G.A..CC.CCAGA.GGA

IGR  -   2817075  2817455  ()  14  hisS aspS

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 - 2817075 2817455 hisS aspS [COG0124 COG0173]
1 Thermoanaerobacter tengcongensis strain MB4T B/C NC_003869.1 + 1229212 1231271 HisS AspS [COG0124 COG0173]
2 Clostridium perfringens B/C NC_003366.1 + 2670305 2670842 thrS [COG0441]
3 Oceanobacillus iheyensis B/C NC_004193.1 - 2047115 2047444 hisS aspS [COG0124 COG0173]
4 Haemophilus influenzae Rd P-g NC_000907.1 - 746579 746657 HI0699 [COG1047]
5 Listeria innocua Clip11262 B/C NC_003212.1 - 1500059 1500338 glyQ glyS [COG0752 COG0751]
6 Lactococcus lactis subsp. lactis B/C NC_002662.1 - 1927539 1927777 ytcD [COG0589]
7 Chlamydia muridarum P/C/V NC_002620.1 - 294914 295161 TC0255 [COG0582]
8 Listeria monocytogenes strain EGD B/C NC_003210.1 - 1494037 1494316 glyQ glyS [COG0752 COG0751]
9 Haemophilus influenzae Rd P-g NC_000907.1 + 1592772 1593254 HI1522.1 HI1523 [COG4416 -]
10 Bacillus halodurans B/C NC_002570.1 + 1453712 1454085 glyQ glyS [COG0752 COG0751]
11 Bacillus halodurans B/C NC_002570.1 + 1345001 1345666 hisS aspS [COG0124 COG0173]
12 Bacillus halodurans B/C NC_002570.1 - 2672119 2672535 ileS [COG0060]
13 Bacillus subtilis B/C NC_000964.1 - 2607926 2608221 glyQ glyS [COG0752 COG0751]

0  ________________________________________________________________________________
1  AAAGTGCCAACATACTATCAAATCAATTAAGGGTTAATCATCTTCTCTTCAGCTTTAACTTAGTCACATCTAAAGAGCTG
2  AAAACTATGTTTTTATTATAATATTTTTCAAATTCTATTTCAAGATTTTTTTTCAAATTATTTTCTAAAAACTTTAATTA
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  AAAACTCCCAGCCCTTTGTAC-----------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  ATTGAGTGAAAGAAATGGAAGAGTTTTGACCATGCTAGAACTAATAGACGCTTGAAAGGAGAAGCACTATGCGTTCTAGT
12  AAGGGAGCTTTGTAAAAAG-------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  ACCCTTAAGAAGAAATTGATTTTTATGAAAAGCGAAAGTGTGAGCGATGTGACATAAAAGGTAGAAGAAGGAATAAGACA
2  ACTTAATAACTTTTTTAAATTTAAATTTATAATATTGAGAACTTATTTCCACCTAAACCCTTATAATATCTTATATTCCA
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  ATTCGTCCAGCTACGTTGGAGCAGCGATTGCCTGTCTCACCATGGTTCGATACCGGTGAGTTAATGGGAGAGCACCAAAG
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  AAAACAACCAATCAAGAGATGGGATATTGACAACAAGAGCGGGAATTGTCATAAAAATAATCACCATACGGGCAAAGACC
2  ATTAG---------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  GCTTGAGCAAGAGGCCGTGTCCCCTAATGGAATAATGCCACATGACGCCAAACGGTCCCGCTGTAATCATAGAAGACAAT
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  CTGCAATGGAGCAGAAATGACATCCACCTCATGGCAGGTAGAACGAAGGAATTAAGGACTAAGATCCAGTGAGACATGGG
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  AACCTAT-------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  AGGGTAAACCCCATGAGATAAGTGGAGCTATCCCGCCATAATATGGAAATAGGATATGAGGTTTATTAAGCTTACCCATT
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  TAATGGTTATATAAGTAAGAAATGTTAATATAGGCCATGAGATGCTCTTGTTGTGATGAGAAAATTAAAGAAAAACTAAG
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  ATATTAAGAGAAAATAAAAGATAATAGAGGGAGGGGGTATTTTTCTCATACCTGGCAAGGCATATGAGTTAGCAGGAATA
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  AGTAGCATTTGGGCTTATGTTATAGATGCGCTTCTTGCATTTGTGATTGTTTTATGTTTTGCAGAGGCAAGTGGAATATT
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  TGAAAAAACAGGGGGTGCCTATGTTTATGCGAAAGAAGCATTTGGAGAGTTTATAGGTTTTGAGGTAGGTATAGTAATGT
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  GGGCTGTAAGAATAAATAGGATGGGCTACATTATCAGTAGCTTTTGCTACTACATTAAGTGTGTTTTGGCCTTCAGCTGC
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  TACTGGTACTTTAAAAAATGTGATTGCTGTTTCTTTGATTATTATTCTGAGTTTTATAAACTATTTTGGAATTAGAATTG
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  TAGAATACATAAATAATATAGTCACTATCAGTAAAATACTACCTTTAATTGTATTTATTGTATTGGGACTGTTTTTTGTT
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  AATTCTGAGAATTTCAATATTTCAGCTTACTCTACTCATAGTGGACTTTGGGCTGCTATTGTTTTGGTTTTTTATGCTTT
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  TGCAGGTTTTGAATCTCTAGTGATTGTGGCAGGAGATATAGAAAATCCGAAGAGAAATTTGCCCATAGCATTATTAATTT
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  CCATGGGAATTGTATCTTTAATATATATTCTTACCCAAGTTGTCGCCATTGGGACATTAGGAGAAGCTTTGAAAGGTTCA
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  CCTACACCTGTAGCAGATGCAGCAAAATCTTTCTTAGGAGAGTTTGGATTACTATTAGTAACTATTGGAAGTCTTATTTC
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  AATCGGAGGAGTAAATCTTGCATATTCCTTCAATACTCCACGAGTAGGAGTGGCATTAGCAGAAGAAGGTATACTTCCTA
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  AAATGATAGCAAAGAAAAGCAAGTATGATACTCCTTACATTGCAATAATTATTACAGCTTTATTGGCTATTCCTCTTGTA
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  TTAACAGGTACTTTTGTAAAATTAGCTATGATAAGTGTTGTTTCGAGATTTGCTCAATACATTCCTACTTCGTTAGCTAT
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  CATTGTTTTAAGGAAAAGGGAAGTTAAAACAAATTTTAAACTGCCTTTTGGAATAGCGATTCCAACTATAGCTACAATAC
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  TGAGCATATATTTTTTAAGCAAGGCAAGTATTGAACAGCTCGTATGGGGATTGGGAGGTTTAATACTCGCAATGCCGTTA
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ___________________________________________________CAGAGAACCCCAATCCCATTATTATAATA
1  TATTTCCTCTTTAAGTATACTTCTTAATTTAATTATTCTTGATTTTCTGTGATTTGGTGTGAAAAGAAGATGGAATTTGC
2  ---------------------------------------------------AATTTATTTTTATTTTATCCATTGACATA
3  ---------------------------------------------------CATTATTGCTAACAGAGATTATTATAATA
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  ---------------------------------------------------TAGTCTCCCCCAATCCCATTATTATTTTA
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  ---------------------------------------------------TGACACAGCTTGCGTTCATTCGTATGATA
12  ---------------------------------------------------TAGCTTAGATCTACTTGCGTTCTTTTTAG
13  --------------------------------------------------------------------------------

  
0  __GAAATTGAGTACATAGCAAATGATGAAAGATTTGAACCAATAATGGA_GAAGAGTAGGTCAGAT_TGCATGATTAGAG
1  --CATTGACAGCAATTTATAGGATGGGGTATAATATCAAATAAAATAAG-GAAAATGCGATGAACA-GGAGAGTAGCAAT
2  --CAAAAATAATAAACTTATAATCTAAAGTAAATATTATAAATTTATTA-ACACAATGAAGAGACG-AGTAAACTTTGGT
3  --TACATT-----CCAATCAAATA--GAACG--TACAACCGTTGAAGGA-AAA-AGTAATTTGGAA--GCAGTAGCAAAG
4  --------------------------------------------------------------------------------
5  -----------------------------------------------------CTTTTTCGCAAAA-ATACAGTATCTTT
6  --------------------------------------------------------------------------------
7  ACGGCTCTTCCTTCAAAGCAATTGAGGGACCTTCTATGGTACCTTTTAG-AAAGGTTATTATCAAT-AAACACACCCTAA
8  ----------------------------------------------------CTTTTTAGCAAAAA-TACAGTATCTTTT
9  --------------------------------------------------------------------------------
10  ----------------------------------CAGAACAGAAAAAGT-TAAGTATGATTCAAAG-TACCAAAATGTTA
11  --GTAAGCAACAACATAC----TGC-GAATGGTTT---CCGATGAAGAG-GAAAAGTAATTAAGATCTGTTTTCAAAGAG
12  --CTCTCGCATATAATGAATTTTAATTAAAAAAGCGAACATACAATGGACGATGAGAGGGACAGTA-CACGTCACCCCTT
13  ------------------------------------------------C-ATTTGGTCCATCTTTT-TATATGATCATTT

  
0  AG_GAACCCGCCCCAGGCTGAAAGCGGATCCC__ATTG__CG_TCTTTCTCGAAACAACACTCCGGAGGTTTCCTGCTGA
1  AG-CAGGTATACAGGGAGAAGATACCGCGACT--GAGA--GT-ATCTTTATACTCATGCTATTGCGAAGGACACCTGGGA
2  AC-ATTTTCAGAGAGAAGGTACAGTAGCTGTA--AGTA--CT-TTTAAATGGAATTAGTTGAAGACTACCTCTGAGTGAC
3  AGAGAAGTAGCCATTGGCTGAAAGCTATTTCC--TATA--CGCTCCAAAT-GAAAGA-CATTCTGGAGGTTTTAT----A
4  --------------------------------------------------------------------------------
5  TA-ATATATCAACTAATAGGTACATTGAAGGA--AAAT--AG-TAACAAAAAGCTCTGTTTTTAGCGAGTTCGGGTTTGG
6  --------------------------------------------------------------------------------
7  GC-TTAGGATTAAAAGAACTCTTATTTTAAAC--AGAG--GA-AGAACGCATTCTTATATTCTAAAAATGTTTATCCATA
8  AA-TATATCAACTAATAGGTGCGTTGAAGGAA--AATA--GT-AACAAAAAGCTCTATTTTTAGCGAGTTCGGGTTTGGT
9  -----------------------------------------A-AATGCCAAAGAAACACTACTGTACAGGTTGGCGAAAA
10  TA-TTTCAATGCTATGACGGAGAACAGTACTT--GATT--CC-TTTTACATAAAAGCGAACCTAGGATGGTGAGAGCTAG
11  AG-GAAG--GTCAGCGGCTGAAAGCC--TTCT--AAAA--CA-GCCTTAATGAATGAACACCTTTGAGGAGTCTTTCTGA
12  CC-AAAAGCGAGTCAGG--GATGGTGGAAGCCTGATGGAACG-TGAATGTGGAAA-ATCACCCTTTAGTTTTTGCACCGA
13  AT-TATTAAATATGTTGCAGTGAGAGAAAGAA--GTAC--TT-GCGTTTACCTCATGAAAGCGACCTTAGGGCGGTGTAA

  
0  ACG__CGTGAATAACGCCATTAGGCAGTGA_ACGTGAA_CCTG_CGTTAAAGGA__TCGAGC_GGGAATATG____AA__
1  GCT--GACTGGCCGACAATGTAGGCTAGAT-CCGTGAA-CCTG-CGTTAAGGGA---------------ATG----A---
2  TCT--AATCCAGTCCGTCATAATCACGTTA-CGATTAA-TTTT-AAGTGGTACT--TTATTT-TTAATTATT----AA--
3  TCG------AATATAG----TAGGTA-TAA-ACGTGTT-GCAGGCGTTATCTGT--GAAAGC-GGATGTTCT----AA--
4  --------------------------------------------------------------------------------
5  TGT--GAGCCGGATATTTAACTTTTTGTGA-AGGCGTT-CTGG-AGTACAGCGAAATCAAGGTGGGAAT-TG----TT--
6  --------------------------------------------------------------------------------
7  TAA--AAAGTCTGATGATACTTCTTGTTTT-TCAGCTT-CAAG-TAAAAAG-----------------------------
8  GGG--AGCCGAATATTTAACTTTTTGTGAA-GGCGTTC-TGGA-GTACAGCGAA--ATCAAG-GTGGGAATT----GT--
9  GCC--CCTACCAATATCAATAGTTGTTGCC-ACCAACA-CGAC-CGAGACTACG--GCATAC-ACGGCACAA----TC--
10  GGA--TGTAAACATCAAGGAAGGCACTCTT-GAGCATG-AACG-ATGAAAAGAA--AGTGGC-CTATGGTGT----CA--
11  ACG--C---AAT--CGTTAGTAGG-AGAGA-ACGTAGG-CAGG-CGTTATCTGCATTTGAGT-GGAAGCATGTCATAT--
12  ACGATCGTTGATT----CAGTAGGCTGCAACAGGTCATGCCTG-TTAACAATGA---CACGA-GGGAACAAG----CAAA
13  GCT--AAGGATGAGCACGCAACGAAAGGCA-TTCTTGA-GCAA-TTTTAAAAAA--GAGGCT-GGGATTTTG----TT--

  
0  ______CGTATTC____CAACTAGGGTGGCACCACGGGTAT_A___AC_T_CTCGTCCCTA____CT____ATCATGTAT
1  -------GTA--C----CAATCAGGGTGGCACCACGGGATT-A---ACCT-CTCGTCCCTG----CG----TTC-TGCAG
2  ------AGTA-------CAATTTGGGTGGAACCACGGGAAT-ATACAC-T-CTCGTCCCTT----TT----CT-ATATTT
3  ------CTTTTGAACATCAACTAGGGTGGCAACGCGGGTA--A---AC-T-CCCGTCCCTT----CT----TTAATTT--
4  ------------------------------------------------------------T----CC----GTAAAGTCT
5  ------TAAATTC----CAAATAGGGTGGAACCGCGAG-AT-A---AC-T-CTCGTCCCTATATGCTTTAAATCA-GCAT
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  ------TTAATTC----CAAATAGGGTGGAACCGCGAGC-T-A---AC-T-CTCGTCCCTATATGCTTTAAATCA-GCAT
9  ------AGTCGCG----CTGATGCGGATAAACGTCTAAGAG-A---AT-G-CTTAATTGCA----CA----AAGGTATCC
10  ------TCATAGG----CAAATAGGGTGGAACCGCGGGT-T-A---AC-T-CTCGTCCCTATG--CC----GTCC-GTTC
11  ------CATGCTT----CAATTAGGGTGGCACCACGGGAATCA---AC-T-CTCGTCCCTG----AT----GGATAATAC
12  GAATGTCGTTTGT----TCACTAGGGTGGTACCGCGGGAAT-A---CC-TTCTCGTCCCTA----AT----GG---GGAT
13  ------CTCAG------CAACTAGGGTGGAACCGCGGG-AG-A---AC-T-CTCGTCCCTA----TG----TTTGCGGCT

  
0  AG______TAGGGGCGGGAGTTTTTTTCATTTTCATCATTAACGATCATTGGA____TATTTTATAAGGAATACATAAGG
1  AC------GAGGGGTTTTTAAATGTAAGAAGATAAAAAGGAGTTGGTGAG------------------------------
2  AG------AAGAGGGATGAGAGTTTTTATTTTATATGAATGAAAATTAAAAGAAATTTATTTTGAAAGGAGAAATTAAT-
3  -G------AAGGGACGGGAGTTTTTTGTATGTACGGATAATCATAAGGAGGTA----AGTTT------------------
4  TG------CGCGCGGAATAATTTTCGCTACAATGGTACGACTTTTTTAACGGA----TTTTTTATAAGGAAAACATA---
5  A-------TAGGGACGAGAGTTTTTAT-ATTGGCTGAATTATTTTGGAGGTGG----AAGCA------------------
6  ----------------TTGATTTTCCTACCTTTCAT-AGTAA---TTGCTGGA----TATTTTATAAGGAAATGATTTAA
7  --------------------------------------------------------------------------------
8  A-------TAGAGACGAGAGTTTTTAT-ATTGGCTGAATTATTTTTGGAGGTG----GAAGCA-----------------
9  AT------TCAAGGCATGGATATTTTGGGTGATAGTACGATTATTAGGTTGGA----TATTTTATAAGGAAAATAAACTA
10  GGCA----TAGAGGCGGGAGTTTTTTGTACTTTAAGTGAAACTTTTGTTCAGG----AGGAAAGAAAGGCAACGGCTTTC
11  AT------CAGGGGTGGGAGTTTTTT--ATTTGTCCTTTTACATAACGTCGCA----AGATCAAAAAGGATACCCGTTAT
12  ----------GGGGAGG---TTTTTATTTGTTCCATTGAAAACAATCGTTTCC----GCCACAAGGCTTGGCTATAATGG
13  GGCAAGCATAGAGACGGGAGTTTTTTGGTTGCTGCCGCAGTCAACTTATGAAA----GAAAAGTGGAGGTGCTTGAA---

  
0  AGGTCTACCT______________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  TTCCATCAGGATTAAAAGTCCCCTTATCTGTAAGCTCTATTTTACCATTTTTTTATTCTTTTTATATGAAAAGCAATGAG
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  AGCCATTAAAACAACGAAAAAATATCAGGGTTTTATATTCTCAGTTTTTGAAACGTAATATTGAACGAATTAGCAAATTT
10  ACTAAAGGTTTGACGCGCCGATTTCGAACGGTGGTCTATATGAAAAGGAGGAGCTTGAACAG------------------
11  TTCGAATCTTCTAGGTTTGGGGACAAGCCGAGTTTTTCTAATAAAATGGAGGGAATAACA--------------------
12  AGTTGCAAATCATTAGGAGGAATGGAA-----------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  ATATTCTTTAAATATCTTATAATCTTATTCAGATCAATTAATGTGATTTATTGATGGTATATTTCTAATAATAATTATAT
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  GATAAAAGGAGGGTTTACCTCGCACAAAGTTTAAAAAGAAAAGACGGCGATAATAACGGCACGGCAATGCGCGTTATTAC
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  AATATTCTTAGGGAGGTTTTATT---------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  CAGCTACGCAGAACATGCCTGCATATAGCCATACGCCGCCTACCTTGCGCAAGGCGGGCGGATTGTAACAAATCTTTTAA
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  _____________
1  -------------
2  -------------
3  -------------
4  -------------
5  -------------
6  -------------
7  -------------
8  -------------
9  TTATGGAGAATAT
10  -------------
11  -------------
12  -------------
13  -------------