BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (- 2607926 to 2608221) circular

Islands  CA...GG.CCA.C.....A.A.GA.CA...A..A..,,,.A.G..GCAG.GAGAG,,,GAAG.AC..GCG...ACC.CA.
5'-   CATTTGGTCCATCTTTTTATATGATCATTTATTATTAAATATGTTGCAGTGAGAGAAAGAAGTACTTGCGTTTACCTCAT
   |         |         |         |         |         |         |         |        
   2608220   2608210   2608200   2608190   2608180   2608170   2608160   2608150  
   |         |         |         |         |         |         |         |        
3'-   GTAAACCAGGTAGAAAAATATACTAGTAAATAATAATTTATACAACGTCACTCTCTTTCTTCATGAACGCAAATGGAGTA
Islands  G.,,,CCAGG.AG,,,,,.A.AC.AG.,,,.AA.AA...A.ACAACG.CAC.C.C...C..CA.GAACGC,,,.GGAG.A

  
Islands  G,,,GCGACC..AGGGCGG.G.AAGC.AAGGA.GAGCACGCAACG,,,GGCA..C..GAGCAA....,,,,,,GAGGC.G
5'-   GAAAGCGACCTTAGGGCGGTGTAAGCTAAGGATGAGCACGCAACGAAAGGCATTCTTGAGCAATTTTAAAAAAGAGGCTG
   |         |         |         |         |         |         |         |        
   2608140   2608130   2608120   2608110   2608100   2608090   2608080   2608070  
   |         |         |         |         |         |         |         |        
3'-   CTTTCGCTGGAATCCCGCCACATTCGATTCCTACTCGTGCGTTGCTTTCCGTAAGAACTCGTTAAAATTTTTTCTCCGAC
Islands  C...CGC.GGAA.CCCGCCACA..CGA..CC.AC.CG.GCG..GC...CCG.AAGAAC.CG..,,,,......C.CCGAC

  
Term (99.90)%  ----------------------------------------CTCTCGTCCCTATGTTTGCGGCTGGCAAGCATAGAGACGG
Islands  GGA....G..C.CAGCAAC.AGGG.GGAACCGCGGGAGAAC.C.CG.CCC.A.G...GCGGC.GGCAAGCA.AGAGACGG
5'-   GGATTTTGTTCTCAGCAACTAGGGTGGAACCGCGGGAGAACTCTCGTCCCTATGTTTGCGGCTGGCAAGCATAGAGACGG
   |         |         |         |         |         |         |         |        
   2608060   2608050   2608040   2608030   2608020   2608010   2608000   2607990  
   |         |         |         |         |         |         |         |        
3'-   CCTAAAACAAGAGTCGTTGATCCCACCTTGGCGCCCTCTTGAGAGCAGGGATACAAACGCCGACCGTTCGTATCTCTGCC
Islands  CC.,,,,CAAGAG.CG..GA.CCCACC..GGCGCCC.C..GAGAGCAGGGA.AC,,,CGCCGACCG..CG.A.C.C.GCC

  
Term (99.90)%  GAG-----------------------------------------------------
Islands  GAG......GG..GC.GCCGCAG.CAAC..A.G,,,G,,,,G.GGAGG.GC..GAA
5'-   GAGTTTTTTGGTTGCTGCCGCAGTCAACTTATGAAAGAAAAGTGGAGGTGCTTGAA
   |         |         |         |         |         |    
   2607980   2607970   2607960   2607950   2607940   2607930   
   |         |         |         |         |         |    
3'-   CTCAAAAAACCAACGACGGCGTCAGTTGAATACTTTCTTTTCACCTCCACGAACTT
Islands  C.C,,,,,,CCAACGACGGCG.CAG..GAA.AC...C....CACC.CCACGAAC..

IGR  -   2607926  2608221  ()  14  glyQ glyS

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 - 2607926 2608221 glyQ glyS [COG0752 COG0751]
1 Listeria innocua Clip11262 B/C NC_003212.1 + 1191579 1191943 pheS pheT [COG0016 COG0073|COG0072]
2 Oceanobacillus iheyensis B/C NC_004193.1 - 2047115 2047444 hisS aspS [COG0124 COG0173]
3 Oceanobacillus iheyensis B/C NC_004193.1 - 1977806 1978146 glyQ glyS [COG0752 COG0751]
4 Listeria monocytogenes strain EGD B/C NC_003210.1 + 1240682 1241047 pheS pheT [COG0016 COG0073|COG0072]
5 Listeria innocua Clip11262 B/C NC_003212.1 - 1500059 1500338 glyQ glyS [COG0752 COG0751]
6 Bacillus halodurans B/C NC_002570.1 + 1345001 1345666 hisS aspS [COG0124 COG0173]
7 Listeria monocytogenes strain EGD B/C NC_003210.1 - 2241970 2242096 sepA [COG2015]
8 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 - 3341416 3341656 CAC3195 [COG0423]
9 Listeria monocytogenes strain EGD B/C NC_003210.1 - 1494037 1494316 glyQ glyS [COG0752 COG0751]
10 Bacillus subtilis B/C NC_000964.1 - 2800081 2800410 alaS [COG0013]
11 Bacillus halodurans B/C NC_002570.1 + 1453712 1454085 glyQ glyS [COG0752 COG0751]
12 Bacillus halodurans B/C NC_002570.1 - 2672119 2672535 ileS [COG0060]
13 Bacillus subtilis B/C NC_000964.1 - 2817075 2817455 hisS aspS [COG0124 COG0173]

0  ________________________________________________________________________________
1  AAAGAGATAATCTCTCCAACTAATATGGGGAGATTATTTTTTAGCTTGAATCTTTCGTAGAACCATACTATAATAGAAAC
2  CATTATTGCTAACAGAGATTATTATAATATACATTCCAATCAAATAGAACGTACAA------------------------
3  AATTTCACTTTATGTAGATTGACAAATATGAACC----------------------------------------------
4  AAAAGAAATAATCTCTCCAACCAATATGGAGAGATTATTTTTTAGCTTGAATCTTTCCTAGAACCATACTATAATAGAAA
5  CT------------------------------------------------------------------------------
6  ATTGAGTGAAAGAAATGGAAGAGTTTTGACCATGCTAGAACTAATAGACGCTTGAAAGGAGAAGCACTATGCGTTCTAGT
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  C-------------------------------------------------------------------------------
10  CATCGGCGTGCCGCTTGTCTATAATTTCTCGTAGAAT-------------------------------------------
11  CAGAACA-------------------------------------------------------------------------
12  AAGGGAGCTTTGTAAAAAGTAGCTTAGATCTACTTGCGTTCTTTTTAGCTCTCGCATATAATGAATTTTAATTAAAAAAG
13  CAGAGAACCCCAATCCCATTATTATAATAGAAATTGAGTACATAGCAAATGATGAAAGATTTGAACCAATAATGG-----

  
0  ________________________________________________________________________________
1  TATCTAAATAAGTAAAGACAATGAAAGAGCCA------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  CTATCTAAATAACTAAAGACAATGAAAGAGCCA-----------------------------------------------
5  --------------------------------------------------------------------------------
6  ATTCGTCCAGCTACGTTGGAGCAGCGATTGCCTGTCTCACCATGGTTCGATACCGGTGAGTTAATGGGAGAGCACCAAAG
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  CGAACATACAATGGACGATGAGAGG-------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  GCTTGAGCAAGAGGCCGTGTCCCCTAATGGAATAATGCCACATGACGCCAAACGGTCCCGCTGTAATCATAGAAGACAAT
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  AACCTATTGACACAGCTTGCGTTCATTCGTATGATAGTAAGCAACAACATACTGCGAATGGTTTCCGATGAAGAGGAAAA
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  _CATTTGGTCCATCTTTTTATATGATCATTTATTATTAAATA_TGT_TGCAGTGAGAGAAAGA_AGTACTTG____CGTT
1  -AGTAGCATAGTGAGTCTGTATAGGGAGAAGTGGTCATAGAC-TGA-AAGCCACTTTACAAAC-GAATTTGC----GAAC
2  -CCGTTGAAGGAAAAAGTAATTTGGAAGCAGTAGCAAAGAGA-GAA-GTAGCCATTGGCTGAA-AGCTATTT----CCTA
3  -GTATAGAGTATTATTTTTACAT----ATTTAATAATAAATTCTAT-TGCGATGA-AGAAGAAGAGTATTAA----GGAT
4  -AGTAGCATAGTGAGTCTGTATAGGGAGAAGTGGTCATAGAC-TGA-AAGCCACTTTACAAAC-GAATTTGT----GAAC
5  -TTTTCGCAAAAATACAGTATCTTTTAATATATCAACTAATA-GGT-A-CATTGAAGGAAAAT-AGTAA-------CAAA
6  GTAATTAAGATCTGTTTTCAAAGAGAGGAAGGTCAGCGGCTG-AAA-GCCTTCTAAAACAGCC-TTAATGAA----TGAA
7  --------------------------------------------------------------------------------
8  ---------CCATTTTATTTTTTGATAATTTAATATCTA--------TACAATGACA--AAGATAGAAATTG----TATT
9  -TTTTTAGCAAAAATACAGTATCTTTTAATATATCAACTAAT-AGG-TGCGTTGAAGGAAAAT-AGTAACAA----AAAG
10  -ACATACGAATCTCGAGTGACGGATCTGAGTACGCCGAAGCC-CTG-TTAAAGAGAGAAGCTC-CATAAGCT----GAAA
11  -GAAAAAGTTAAGTATGATTCAAAGTACCAAAATGTTATATT-TCAATGCTATGACGGAGAAC-AGTACTTGATTCCTTT
12  -GACAGTACACGTCACCCCTTCCAAAAGCGAGTCAGGGATGG-TGG-AAGCCTGATGGAACGT-GAATGTGG----AAAA
13  -AGAAGAGTAGGTCAGATTGCATGATTAGAGAGGAACCCGCC-CCA-GGCTGAAAGCGGATCC-CATTGCGT----CTTT

  
0  TAC_CTC___A__TGAA_AGCGAC_CTTAGGGC__GGTGTAAGCTA_AGGATGAGCA_CGC___AACGA_AAGGCATTCT
1  ATT-TCA---C--CTCT-GGAGTC-GCCCCCCG--AGAAGCACGTT-ATGTGTGAAG-GTG---GTCCG-GTTACTAAGC
2  TACGCTCCAAA--TGAA-AG--AC-ATTCTGGA--GGTTTTATATCGAATAT-AGTA-GGTATAAACGT-GTTGCAGGCG
3  TTA-CT----A--TGATTAGCGAC-TCTAGGAT--AGTGAAAGCTAGAGGATAGTAA-CCT---TAAGA-AGGAACTTCT
4  ATT-TCA---C--CTCT-GGAGTC-GCCGCCGG--GAAGCACAAGT-AGTGTGAAGG-TGG---TCCGG-TTACTAAGCC
5  AAG-CTC---TGTTTTT-AGCGAG--TTCGGGTTTGGTGTGAGCC---GGATATTTAACTT---TTTGTGAAGGCGTTCT
6  CAC-CTT---T--GAGG-AGTCTT-TCTGAACG--CAATCGTTAGT-AGGA-GAGAA-CGT---A--GG-CAGGCGTTAT
7  --------------------------------------------------------------------------------
8  TTC-TTC---A-----A-AGAGAGGCTGTGGAG--GGTGTAAAC----GGTCAAGAA-AAT---TCAGT-AGTGGAGTCT
9  CTC-TAT---T--TTTA-GCGAGT-TCGGGTTT--GGTGGGAGCCG-AATATTTAAC-TTT---TTGTG-AAGGCGTTCT
10  GGA-GCT---T--TATC-AGAAGA-TCGGAGGA--AGCTAATCCTG-AGTGCAGTTA-ATC---ACTGC-CGCTTATCCT
11  TAC-------A--TAAA-AGCGAA-CCTAGGAT--GGTGAGAGCTA-GGGATGTAAA-CAT---CAAGG-AAGGCACTCT
12  TCA-CCC---T--TTAG-TTTTTG-CACCGAAC--GATCGTTGATT-CAGTAGGCTG-CAA---CAGGT-CATGCCTGTT
13  CTC-GAA---A--CAAC-ACTCCG-GAGGTTTC--CTGCTGAACGC-GTGAATAACG-CCA---TTAGG-CAGTGAACGT

  
0  T__GAGCA______ATTTTAAA_AAAGAGGC_TGGGATTTTGTTCTCA__GCAACTAGGGTGGAACCGCGGG_A__GAAC
1  C--GTTAT------CGAATTTT-GAGTGGGA-ACAAATTTTGTTCTTA--T----TAGGGTGGTACCGCG---A--GAAG
2  T--TATC--------TGTGAAA-GCGGATGT-TCTAACTTT-TGAACA--TCAACTAGGGTGGCAACGCGGG-T--AAAC
3  ---GAGCA------ATGAACTATAAAGTGGC-TCA---TGTATCTTGA--GCAAGTAGGGTGGAACCGCGGT-A--AAAC
4  G--TTATC------GAATTATG-AGTGGGAA-CAATTTTTTGTTCTTA--T----TAGGGTGGTACCGCG---A--GAAG
5  G--GAGTA------CAGCGAAA-TCA-AGGT-GGGAATTGTTTAAATT--CCAAATAGGGTGGAACCGCGAG-A--TAAC
6  C--T-GCA--------TTTGAG-TGGAAGCA-TGTCATATCATGCTT----CAATTAGGGTGGCACCACGGG-AATCAAC
7  ----------------GTTAAA-AAAGAGGC-TTGGATTTTTCAAGCC--TCTTTTTTTGGTCTAATAATAG-C--AAAA
8  TTCGAGTA------TTTTTAAA-AGAAAAGC-AGGGCTATTGC--------CAATAAGGGTGGAACCGCGGA-A--GTAA
9  G--GAGTA------CAGCGAAA-TCA-AGG--TGGGAATTGTTTAATT--CCAAATAGGGTGGAACCGCGAG-C--TAAC
10  G--CGTTA------CAGGGTTA-AAGGTGAC-GGGCGCATGAATGCCC--GTAATCAGGGTGGTACCGCGAG-A--CAGC
11  T--GAGCATGAACGATGAAAAG-AAAGTGGCCTATGGTGTCATCATAG--GCAAATAGGGTGGAACCGCGGG-T--TAAC
12  A--ACAAT------GACACGAG-GGAACAAG-CAAAGAATGTCGTTTG--TTCACTAGGGTGGTACCGCGGG-A--ATAC
13  G--AACCT------GCGTTAAA-GGATCGAG-CGGGAATATGAACGTATTCCAACTAGGGTGGCACCACGGGTA--TAAC

  
0  __TCTCGTCCCTA__TGTTTGCGGCTGGCAAGCAT_AGAGACGGGAGTTTTTTGGTTGCTGCCGCAGTCAACTTATGAAA
1  --TCTCGTCCCTT--TGTGGATAGAGCTTTTTTAT-TTTGTCTAAAAAGAAGGAGTGAACGGT-----------------
2  --TCCCGTCCCT---TCTTTA--------ATTTGA-AGGGACGGGAGTTTTTTGTATGTACGGATAATCATAAGGAGGTA
3  -----CGTCCCTA--TGTCTA----TAGTAGACAT-AGGGACGGTTTTTCTTATAAAAAAAGTGTGGGATAACAGTATTT
4  --TCTCGTCCCTT--TGTGGATAGAGCTTTTTTAT-TTTGTCTAAAAAGAAGGAGTGAACGGT-----------------
5  --TCTCGTCCCTATATGCTTTAAATCAGCAT--AT-AGGGACGAGAGTTTTTATATTGGCTGAATTATTTTGGAGGTGGA
6  --TCTCGTCCCT----GAT---GGATAATA--CATCAGGGGTGGGAGTTTTTTATTTGTCCTTTTACATAACGTCGCAAG
7  --GGTTTTGAATA--ATTTTATGGAGGTATAAAAA-GAAAGTATGTGAAAATAAACGTGCAGGAGGAAACCGATA-----
8  --TTTCGTCCCTT--TGAGGTGATAGTCTTTTTTA-TTTTTATAAAATTATATTAGGAGGTAAAAGCAA-----------
9  --TCTCGTCCCTATATGCTTTAAATCAGCAT--AT-AGAGACGAGAGTTTTTATATTGGCTGAATTATTTTTGGAGGTGG
10  --TCTCGTCCCTG--TGTAAACGT-TGGTTTGCAT-AGGGGGAGGGCTTTTTTGCTGTCACTGAAGAGAATTTCGATTTT
11  --TCTCGTCCCTA--TGCCGTCCGTTCG---GCAT-AGAGGCGGGAGTTTTTTGTACTTTAAGTGAAACTTTTGTTCAGG
12  CTTCTCGTCCCTA--A---TGGGGATGGGGAGGTT-TTTATTTGTTCCATTGAAAACAATCGTTTCCGCCACAAGGCTTG
13  --TCTCGTCCCTA--CTATCATGTATAG------T-AGGGGCGGGAGTTTTTTTCATTTTCATCATTAACGATCATTGGA

  
0  GAAAAGTGGAGGTGCTTGAA____________________________________________________________
1  --------------------------------------------------------------------------------
2  AGTTT---------------------------------------------------------------------------
3  AACCTTTAGTGATCCTCGCAGTAAAAAATAAGGAGTTGACAAT-------------------------------------
4  --------------------------------------------------------------------------------
5  AGCA----------------------------------------------------------------------------
6  ATCAAAAAGGATACCCGTTATTTCGAATCTTCTAGGTTTGGGGACAAGCCGAGTTTTTCTAATAAAATGGAGGGAATAAC
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  AAGCA---------------------------------------------------------------------------
10  TATAGAGGAGGAAATACA--------------------------------------------------------------
11  AGGAAAGAAAGGCAACGGCTTTCACTAAAGGTTTGACGCGCCGATTTCGAACGGTGGTCTATATGAAAAGGAGGAGCTTG
12  GCTATAATGGAGTTGCAAATCATTAGGAGGAATGGAA-------------------------------------------
13  TATTTTATAAGGAATACATAAGGAGGTCTACCT-----------------------------------------------

  
0  _____
1  -----
2  -----
3  -----
4  -----
5  -----
6  A----
7  -----
8  -----
9  -----
10  -----
11  AACAG
12  -----
13  -----