BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (+ 226238 to 226554) circular

Term (88.06)%  ----GCTGTTCATGTAGGACAGC---------------------------------------------------------
Islands  G.AAGC.G..CA.G.AGGACAGC..A......A.GAGAA.C.AAGGGG.GAA..AA.CCCAA.A..C,,,.AA....A..
5'-   GTAAGCTGTTCATGTAGGACAGCTTATTTTTTATGAGAATCTAAGGGGTGAATTAATCCCAATATTCAAATAATTTTATT
    |         |         |         |         |         |         |         |       
    226240    226250    226260    226270    226280    226290    226300    226310  
    |         |         |         |         |         |         |         |       
3'-   CATTCGACAAGTACATCCTGTCGAATAAAAAATACTCTTAGATTCCCCACTTAATTAGGGTTATAAGTTTATTAAAATAA
Islands  CA..CGACAAG.ACA.CC.G.CGAA.,,,,,,.AC.C..AGA..CCCCAC..AA..AGGG..A.AAG...A..,,,,.AA

  
Islands  A.....A.A.,,,,GA....,,,,GAAG.GAACGA..C,,,,C.C.GAAC,,,GG.G...ACC.G,,,,,,,CAA..G.A
5'-   ATTTTTATATAAAAGATTTTAAAAGAAGTGAACGATTCAAAACTCTGAACAAAGGTGTTTACCTGAAAAAAACAATTGTA
    |         |         |         |         |         |         |         |       
    226320    226330    226340    226350    226360    226370    226380    226390  
    |         |         |         |         |         |         |         |       
3'-   TAAAAATATATTTTCTAAAATTTTCTTCACTTGCTAAGTTTTGAGACTTGTTTCCACAAATGGACTTTTTTTGTTAACAT
Islands  .,,,,,.A.A....C.,,,,....C..CAC..GC.AAG....GAGAC..G...CCAC,,,.GGAC.......G..AACA.

  
Islands  ....CCAGAG,,,...A..A.GA.G,,,.AAG.AA...AGGAGA..A.A.AACAA....AAG...GAA....C.GA..G.
5'-   TTTTCCAGAGAAATTTATTATGATGAAATAAGTAATTTAGGAGATTATATAACAATTTTAAGTTTGAATTTTCTGATTGT
    |         |         |         |         |         |         |         |       
    226400    226410    226420    226430    226440    226450    226460    226470  
    |         |         |         |         |         |         |         |       
3'-   AAAAGGTCTCTTTAAATAATACTACTTTATTCATTAAATCCTCTAATATATTGTTAAAATTCAAACTTAAAAGACTAACA
Islands  ,,,,GG.C.C...,,,.AA.AC.AC...A..CA..,,,.CC.C.AA.A.A..G..,,,,..C,,,C..,,,,GAC.AACA

  
Islands  .A.CAC.GA..CA.G.GAAGGCAAGCAGG.C.GC.G....C.CA...A.GAG.A....G..AGGAGGAGGAAGAGGA
5'-   TATCACTGATTCATGTGAAGGCAAGCAGGTCTGCTGTTTTCTCATTTATGAGTATTTTGTTAGGAGGAGGAAGAGGA
    |         |         |         |         |         |         |         |    
    226480    226490    226500    226510    226520    226530    226540    226550    
    |         |         |         |         |         |         |         |    
3'-   ATAGTGACTAAGTACACTTCCGTTCGTCCAGACGACAAAAGAGTAAATACTCATAAAACAATCCTCCTCCTTCTCCT
Islands  A.AG.GAC.AAG.ACAC..CCG..CG.CCAGACGAC,,,,GAG.,,,.AC.CA.,,,,CAA.CC.CC.CC..C.CC.

IGR  +  226238  226554  ()  17  ybxG

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 + 226238 226554 ybxG [COG1113]
1 Wigglesworthia brevipalpis P-g NC_004344.1 - 466643 467143 Wbr0450 [COG0192]
2 Clostridium perfringens B/C NC_003366.1 - 909520 909868 CPE0733 [COG0583]
3 Pyrobaculum aerophilum A NC_003364.1 + 481542 481581 PAE0835 PAE0836 PAE0837 [COG0524 - COG1208]
4 Listeria innocua Clip11262 B/C NC_003212.1 + 2375563 2375721 lin2340 [COG0477]
5 Vibrio vulnificus CMCP6 chromosome II P-g NC_004460.1 + 433436 434258 VV20403 VV20404 [- -]
6 Campylobacter jejuni P-e NC_002163.1 - 387000 387167 Cj0422c [-]
7 Staphylococcus aureus subsp. aureus N315 B/C NC_002745.1 + 35750 36163 SA0025 [-]
8 Streptococcus pyogenes B/C NC_002737.1 + 888840 888953 srtT [COG1132]
9 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 + 1441516 1441800 dnaG sigA [COG0358 COG0568]
10 Borrelia burgdorferi plasmid lp28-4 Sp NC_001854.1 + 19184 19402 BBI30 [-]
11 Clostridium tetani E88 B/C NC_004557.1 - 2195261 2195474 CTC02064 CTC02063 CTC02062 [COG1032 COG5011 COG1530]
12 Chlamydophila pneumoniae CWL029 P/C/V NC_000922.1 - 290166 290394 CPn0255 [-]
13 Helicobacter pylori 26695 P-e NC_000915.1 + 509067 509351 HP0486 HP0487 [- -]
14 Methanococcus jannaschii A NC_000909.1 + 546890 546997 MJ0617 [COG1838]
15 Campylobacter jejuni P-e NC_002163.1 - 71572 72004 Cj0056c [-]
16 Rickettsia prowazekii strain Madrid E P-a NC_000963.1 + 149263 149399 RP126 [COG2009]

0  ________________________________________________________________________________
1  TCTTTATAATTTTTATCAGTTTTTATATT---------------------------------------------------
2  TATATTTCCACCTTTCTTAGTGAATATCTAAACAAATTCTCTTTGTTAAATTTTTATCTAATATGTGTGTAATTTAATTA
3  --------------------------------------------------------------------------------
4  GAAA----------------------------------------------------------------------------
5  TGTAATCCTGCTCTTTGTTATTGATTTAGCTCAACACCTGTCACCGCCCTCACACAAAAGTGATTGGGTATCCTCGATGC
6  --------------------------------------------------------------------------------
7  TTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAACTGTAATTTAAATAAAACTTTCTAAATAAGC
8  --------------------------------------------------------------------------------
9  TGAATCACTTCCTAAAAATTATCTTATATATAATGATATTAAGAAATTTTTTATAATATACATTAAATAAAAGGATTTTA
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  TCTTGATCCTTATTATTATTTTTATATAAAACAACGCTTTTTATTGTATCAGTAAATTCCCTATTGAGCCTTAAAAAAGC
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  TAATATCATCATGTAACTTATCTTCATAACCAAGAAAT------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  CCTCTACTTGATAGTATCATATAACTAGGTTTATACCATAATAAAAGTATGTTATACTTAATAACACTTTGTTATATACC
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  CAGTGTTCCCGCACATTATAAATTCGAAGCTAAAAAT-------------------------------------------
6  --------------------------------------------------------------------------------
7  TAACTGATAAAAAATCAGTTTGTCCACAGTCTGAAACAAGATTCCTATATTCTTTAGGAATCTTGTTTTTTCTATTTTTA
8  --------------------------------------------------------------------------------
9  AACATTTATCAAGAATTAAATGTTATAGGAAAAATAAAAT----------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  CTTT----------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------

  
0  ____________________________________________________________________GTAAGCTGTTCA
1  --------------------------------------------------------------------GATATTAAATAT
2  TTGCTTTAAACAAAGAATTTACTTTAAAATTGACTTAT------------------------------ATAATACTATTT
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------CACTTCAACTGA
5  --------------------------------------------------------------------AAATCATGACCA
6  --------------------------------------------------------------------------------
7  TGGTGATAAAGAGCAGATAAGATAATGTGTAATAATCACAAAAAAGTTAAATATTTTAAGGCTTGTTTAATTATTAATGA
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------TACTTCTATATT
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------TTTAATGTCTTA
14  --------------------------------------------------------------------------------
15  ------------------------------------------------------------------------TAGTCAAT
16  --------------------------------------------------------------------ACAAATATAATA

  
0  TGTAGGACAGCTTATTTTTTATGAGAATCTAAGGGGTGAATTAATCC_CA_A_TATTCAAATAATTTTATTATTTTT__A
1  TTATTTTGTTGTTGTCATTAAAATTTTAATAAATTTATTATTAATAA-TA-AATATTAAAATTAATTTAATGTAAAT--A
2  ATTTTTTAATGTTAATTATTTTAACAAACTAAACTTTTAA--AAT--------TATCTAGAAAACTTCATTATTTTT--A
3  -----------------------------------------------------------GTTCACGCCATTATTTTT--A
4  GCATTCACTTGCTCAGTTGAACTTACATATCATTTGTGAATTAAAGCACA-A-ACTT--ATGAGTTTTATC-----T--A
5  AGCTCTTAACTTTCAACATCCAACGTTCAACATCCAATCACTATACC-CG-T-AAATTTTTCCTGAGGACTTAAGAG--A
6  -----------------------------------------------------------------GTAATTCTCCTT--A
7  TTTTATATATAAAGAGCAGTATAATAAAGTTGTTAATATATTATGAA-TA-A-TATTCAAGTAATTTTATTGTTTTTT-A
8  --------------------------------------------------------------------------------
9  TTTTCAATTTTAGAATAAAAAACACCATTGAATGGGTAAACTAAGAG-TA-T-GAATAGAATAATTTTATTATTTTTTAA
10  --------------------------------------------------------------------------AAA--A
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  TTAGGATATTAAAAGATTATCCTATCCATTTGCATGCTCATTAGCAA-GC-T-TTTAAGGATAAACTTGTGTTTTAA--A
14  ----------------------------------------------C-TT-T-TCACCAAAAAGGTCTAA-ATTTTT--A
15  CCTTACATTTTAAATAATCAGCTCAAGTTAATTTTAAAATTTAATCC-TTGA-TATTGAAA--AGTTTATTATTCTA--A
16  ATTTTCTGAAACTAAGAGTTTTTTATAGTTGATACTATGGTCAAGAC-AC-T-ATAGTATTAAATTTTATTATTTTT--A

  
0  TATAAAAGAT_TTTAAAA___GAAGTGAAC__GATT___CA__AA_ACTCTGAACAAAGGTGTTTACC_TGAA_AA__AA
1  AATATTTTAT-ATTCAAATTGTATTTGATT--TATT---TT--TTTAATATAAAATAAAAATTTTATT-TAAA-AAATAA
2  TATAAAAG---TATGAAA---TAATAAAAA--TATT---AC--CT-TTAATATAAATAGTAAAACAAT-ATTT-AG--GA
3  TATTAAAAAT-TTTAGAG---AGAT-------------------------------------------------------
4  TATAAAAGCT-TTTAAAA---TAAGGGTAT--TTCT---CATGAA-AAGGTCTTCCAAAGTAACTACA-TAAA-GG--AG
5  GTTAAAACAT-ACCAAAA---ATAGCGAAA--TAACAACCA--AA-AC-CT--ATTTCGATTTTTCAT-TGAATAA--AA
6  AATAAAA-AT-TTTATAA---AAACT--AT--TATT---CC--AT-ACTATAACTTAA----TTAATA-TTGA-AA--TA
7  ATTTGTCGATATTTAAGT---TGAGTTAA----ATT---TA--AA-GGG-TGTA-ATTTGT-TTTACAATGAT-GA--AG
8  --------------------------------------------------------------------------------
9  AATAAAATTT-CTCAAAA---GAAGGATTT--AAAC---TT--TT-TTTGTCGAAATTAATTATGCTC-ATGG-GA--AT
10  ATATTCTCCT-CAATTAG---TATAGATTA--ATTG---TA--TT-ATTATATTAGAGAACATACAAC-ACAA-TA--AG
11  --------------------------------------------------------------------------------
12  ---------------TCA---TCGAACTCC--AAGT---AT--TG-TTAGAAACTAACGATGCTTGGA-GTTC-GA--TT
13  TTTTGTGATT-TTTAAGA---AAAATTAGCTTGATT---TT--AA-ACT------AATTCTATATTCT-TTTA-TG--CT
14  TGTAAGAGAT-TTTAAAA---CTAATTATA--AATA---AA--TT-ATGGTTTTGATTATAGAGTAAG-CTAT-AA--AA
15  GATAAAATAT-TTTAAAA---TCTTTAAAT--ATTT---TT--AC-TTGCTTAATATAATT--TAAGA-TAAA-AA--TG
16  TATTGAATAG-TT-------------------------------------------------------------------

  
0  ACAATTG____TATTTTCCAG__AGAA_ATTTAT_TATGA_____TG_A_AATA_A_G__TAATTTAG_GAGA_TT__AT
1  AAAATTAAATATATATTTAAA--TAAT-ATTGAT-TTTAA-----TTTA-AATA-A-A--TTTGTTA---ATT-TA--AT
2  GGTGAAC----TC-------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  AGCAGAT----T--------------------------------------------------------------------
5  ACAAACT----TATTTTAGAGCAATAA-TTCTAA-AATAAATTTCTG-C-ATTA-A-A--TAATTTAGTGATG-AC--AA
6  TTAAATA----TATTTTATAT--AAAAGATTGAA-TATT------TC-A-AGTG-T-TTTTAATAAAG-AAAT-TTTAAT
7  ATAATTA----GTCTATCAAA--AGAA-AGGGGT-TGGGA-----CT-G-TT----------------------------
8  -------------------------------------------------------------TAAAGTT-ATCA-TT--AT
9  TTAGTTG----TTAGG----------------------------------------------------------------
10  ATTGACA----GAATAATAAG--ATAT-TTTTAT-TA-GA-----TT-A-AATA-A-G--TAATTTTT-GACA-AT--AA
11  --------------------------------------CT-----AA-T-AGTG-A-A--TAGTTAAG-GACAATT--TT
12  TCCTTAT----ATCACTTGGC--TTCT-ATTTCT-TACGG-----TT-A-TTCACA-C--TCATTTTT----A-TT--GA
13  ACAATTA----T-TTTTACAG--AGTA-ATTTATCTATTC-----TC-A-GGTA-AAG--TAAGGAAG-AGGA-------
14  TATCAGG----AGGGATATT------------------------------------------------------------
15  AAAATT-------TGTTACA-----AA-AGCAAA-CAAAC-----CG-AGAATA-A-A---ATTTTAA-GTAT-TT--AA
16  --------------------------------------------------------------------------------

  
0  _ATAA_CAATT___TT__A_AGT____TTGA_A__T__TTTCTGATTGTTATCACTGATTCATGTGAAGGCAAGCAGGTC
1  -ATAA-AAATT---AT--A---T----TTAT-T--T--TTTTAAATTGATATCAATAAAATTGATTCTTTTTGAGATAAT
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  -ATAT-GAATA---AA--T-AGA----TTTC-A--T--TTTTATCAATTTAAAAATTCAAGCCAATAATTAAGAAAGAGT
6  -GTAA-AATTT---TTTAA-AGG----CTAA-A--T--TTTTAAGGTAAAAA----------------------------
7  --------------------------------------------------------------------------------
8  CATAA-ACATT---AT--A-ATT----TCAA-A--TAATTTTATATATTTATAA---ATTTAGGGGA--GTAGACTGATT
9  --------------------------------------------------------------------------------
10  -AAGTGCATTG---TT--ATAGTCTTTTTAATA--T--TTTCTAAGTTTTAATATTTTTTTAAAGTCTTTTAAAAACCCT
11  -ATAA-CAATT---TT--A-AGT----AATA-T--T--TAATAAGTCTACACAAATAAAATTAAGGATTTTCTGTAGTAA
12  -ATCC-CTTTTC--TT--A-AGT----TTGA-ATAT--TTTCTGATTCTTATCTTTTCTATATTTTAAATTTAATAATTT
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  -AGAA--AATTCACTT--A-ACT----TTCA-A--A--GCAAGATTAAACTTTTGCTAGAATAAGTCGATAGTAGTTTTA
16  --------------------------------------------------------------------------------

  
0  TGCTGTTTTCTCATTTATGAGTATTTTGTTAGGAGGAGGAAGAGGA__________________________________
1  TATTTTAAATACTATTTTTATTTAATAAATTTACAAATAAATTATGTAACATATAAATTTTTTAAATTAAAAGTTGATAG
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  TAAATTAAAAATAACTAATTAACCACCCTCTTTTTTAGTCAAATCTTACACATAAAAAGCCAAAACAAAAATAACATAAA
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  TTA-GTTTGCTCCTTTATTAGTAGATAAGGAAGTTATAC-----------------------------------------
9  --------------------------------------------------------------------------------
10  ATCTAAAAACAAGATCCCATTTTTA-------------------------------------------------------
11  AACAGAAGAAAATCTTCAATAATTGTTCATTATTTATTATTCATTATTCATTGCTAATTGTCCATGAACTTAAATATATG
12  GACTTAATATTATTAATTTGATTTTGAGTTGATAAATTAAACTTTATTAAAAGTTATC----------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  AAGAACTTACAAAAAGAATTTATGAAAGGATTTTCAATGAAAAAGATTTTTGCTTTATTAGCTTTAACTTCTTTACTGAC
16  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  TACTATTTTTATAGTATAAAGTAATATTTCTTCTAATTAAAAAACAATATATCTGTTTTATTATTTTTTATAAAATATTT
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  AACAATAAGATAAAATAACAACGTCCACATTAATCAATAAATTAAATTTAGAGCAAGCTTATATTAGATCACTTTTAAAA
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  CTAAAATAGAGGAATGAAAACCTAGGAGGAGGTAATTTGTTTA-------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  TAGTTCTGTTTTGCTGAGGATTTTTTAGCTAAACTCACAAAAGGTGCCTTAAGCGATACAAGCCCGGGTGTCAAAGAACT
16  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  CGATTGAATTAATATTCAAATATAAAGGCTGAT-----------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  CAATAACAGATCAGATATTAATCTGTTGATTTTGTGATAATGAGCCAAAAAATACTTTTATTTTATTTATATGAAATATT
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  CAGCCTTGAAGAG-------------------------------------------------------------------
16  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  TTCAGGATTATTAATAAATAGCCAACAGGATTTTGGTGCATATCTATTCTCAAGGACGAACCAAACAATCTCCATACAAA
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  TATTAATGTTATGGAGAAAATAACAATAATAACCCTTACTCGTAATGAGGAATCTATGCTTAATAACAAAAATAGAAATG
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------

  
0  __________________________
1  --------------------------
2  --------------------------
3  --------------------------
4  --------------------------
5  TAGGACGCCTTACCGTACTCTGCTGT
6  --------------------------
7  --------------------------
8  --------------------------
9  --------------------------
10  --------------------------
11  --------------------------
12  --------------------------
13  --------------------------
14  --------------------------
15  --------------------------
16  --------------------------