BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (+ 2192903 to 2193067) circular

Islands  .ACGG..ACC.CC..CCA..,,,,.,,,.A....A....,,,.GC.A.....C...,,,CC.....,,,...CCAAGC..
5'-   TACGGTTACCTCCTTCCATTAAAATAAATATTTTATTTTAAATGCTATTTTTCTTTAAACCTTTTTAAATTTCCAAGCTT
         |         |         |         |         |         |         |         |  
         2192910   2192920   2192930   2192940   2192950   2192960   2192970   219
         |         |         |         |         |         |         |         |  
3'-   ATGCCAATGGAGGAAGGTAATTTTATTTATAAAATAAAATTTACGATAAAAAGAAATTTGGAAAAATTTAAAGGTTCGAA
Islands  A.GCCAA.GGAGGAAGG.AA....A...A.,,,,.,,,,...ACGA.,,,,,G,,,...GG,,,,,...,,,GG..CGAA

  
Islands  CA...CACC...A..AC.GCAAGCAGG..G.CA.ACGC..GCCA.A.,,,,GAGAC.GGACA.....G.C.CGGAGG.G,
5'-   CATTTCACCTTTATTACTGCAAGCAGGTTGTCATACGCTTGCCATATAAAAGAGACTGGACATTTTTGTCTCGGAGGTGA
         |         |         |         |         |         |         |         |  
  2980   2192990   2193000   2193010   2193020   2193030   2193040   2193050   219
         |         |         |         |         |         |         |         |  
3'-   GTAAAGTGGAAATAATGACGTTCGTCCAACAGTATGCGAACGGTATATTTTCTCTGACCTGTAAAAACAGAGCCTCCACT
Islands  G.,,,G.GG,,,.AA.GACG..CG.CCAACAG.A.GCGAACGG.A.A....C.C.GACC.G.,,,,,CAGAGCC.CCAC.

  
Islands  ,,.AA
5'-   AATAA
       
  3060   
       
3'-   TTATT
Islands  ..A..

IGR  +  2192903  2193067  ()  12  yoqT

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 + 2192903 2193067 yoqT [-]
1 Shewanella oneidensis MR-1 P-g NC_004347.1 + 3726887 3727569 cpdB [COG0737]
2 Wigglesworthia brevipalpis P-g NC_004344.1 - 52386 52522 Wbr0044 Wbr0043 [COG0016 COG0073|COG0072]
3 Clostridium tetani E88 B/C NC_004557.1 + 197079 197482 CTC00230 [COG1940]
4 Buchnera sp. APS P-g NC_002528.1 - 395191 395611 pncB [COG1488]
5 Salmonella typhimurium LT2 P-g NC_003197.1 - 4853395 4853732 STM4595 [COG3539]
6 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 + 2816941 2817676 CAC2695 [COG3409]
7 Salmonella enterica subsp. enterica serovar Typhi P-g NC_003198.1 - 4805006 4805343 sthA [COG3539]
8 Ureaplasma urealyticum B/C NC_002162.1 - 418511 418751 UU367 [COG4487]
9 Campylobacter jejuni P-e NC_002163.1 - 193624 193685 dapB purF [COG0289 COG0034]
10 Chlamydophila pneumoniae CWL029 P/C/V NC_000922.1 - 252757 252884 CPn0211 [-]
11 Bacillus halodurans B/C NC_002570.1 - 3593499 3593702 BH3485 [COG1393]

0  ________________________________________________________________________________
1  AGGAACTCCCTAGAGTGTTACTGTCCTTTCTTTATATTTTTTAAGTGAAGGTACAAGCAACGGATTTTGGCTTATCTTCC
2  --------------------------------------------------------------------------------
3  CCTCCTTCTAAATTTTTCGGCTACATGGAATTATATGTAATAAAATATACTTATCAACATTATCCACAATACGTATGTGA
4  ACATTTAATTTTTTTTGATAATATGATAGTTTTATAAAAAAAAAATCAAAAAACTGGATATTTTTAATATTTAGATATTT
5  ACGGACAAGCGTCGTATATTATTAAAAATAAAGCAATATAGAGTTAAATAAATCCTCCAGGAAATAATAACTATTATCAA
6  TATAATTACCTCTTGAATTTTTTATTTTCTTTATTTCAACTCAATCACATAGTTATAAAATTGAATTAAATATACTTAAT
7  ATGAACAAGCGTCGTATATTATTAAAAATAAAGCAATATAGAGTTAAATAAATCCTCCAGGAAATAATAACTATTATCAA
8  AAATTTCACCAATTTAATTTTTAAAAACTTATCTTTAATTTTAGCAAAGAAAAACACGAAAGTTTTTAAAATAAGTGAGT
9  TTTTATTATTTA--------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  ACTTGTTTTTCAATTTGGGA------------------------------------------------------------

  
0  ________________________________________________________________________________
1  AACAGACATATCGATAGATACGCTCGCTGTTGAAGCACAACCTTAGCAAGTTCACAGTCATTCAGCCAAGCTTTCGAACT
2  --------------------------------------------------------------------------------
3  ATAAGTTGTGCAATTAATGTTAGTTGTCGAAAAAAACATAGAAAAAAATTAAAAAATATGAAAAATTGAAAAAACTAAGG
4  TAAGGTTAGAAAATGAGCTTTTTCAGGCTCTAATAAAAATAATAGCTTACGAATGAAATAATAAAACATTGTTATTCCTT
5  AAAAGAGATCTTGCTCTATAAATCCAGTCATCAACCATACTTCTTTAGTGGTATTTTATTAAACTTTGTTACCGGGTCCG
6  AATAAGAATTACGGTTAACTAAATATACCTAAAATAAATATTATAAATAAAAAATATGGTCAATAGTAGATAACATCACT
7  AAAAGAGATCTTGCTCTATAAATCCAGTCATCTACCGTACTTCTTTAGTGGTATTTTATTAAACTTTGTTACCGGGTCCG
8  TTTACTAATCTATATTAATAAATTAAGGATTAAGATTTTAATTATGAATAAACATT------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  GGAGATTCAAGGCTAATTTGTATCTCTTTATGTGTGATGAACCTCCACCACAAATCAACACACGATCTACTGTGATGTTC
2  --------------------------------------------------------------------------------
3  TTATATCTATAAGAATGTAGTTTAATGTATCAACATTATCCACATAAATGTTGATAACTTGTGGACAATCCACCAGAAAC
4  TTTGATATAGAATAAAATCATATACAATAATAT-----------------------------------------------
5  AAACTGGACTGCCGTTCAATATTGCATCAGAATTTTTATTGAGTTCATAGTTGATATACGTAGAATAGCCGCCTGCTTAT
6  ATTGATCACTTACAAATCCTTATTTCAAGTCATTTTTTATTAAAATATTTATTCCCACTCTGTCAACACAAACAAGCACG
7  AAACTGGACTGCCGTTCAATATTGCATCAGAATTTTTATTGAGTTCATAGTTGATATACGTAGAATAGCCGCCTGCTTAT
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  ___________________________________________________TACGGTTACCTCCTTCCAT_TAAAAT___
1  ATCTTCAGGCGAATGATCGCCG-----------------------------AATACAAACAAAGCTAAAT-TAAATT---
2  ---------------------------------------------------------------------------TT---
3  TAATTATACAATACATAAGTATATAATTAGTATATTAAAAAAACAATAAAGTATATGTTAATTATAGCAT-TAAAAT---
4  ---------------------------------------------------TGTAAAAAACTCTATACATGTAAAATGAG
5  CTACAGAACA-----------------------------------------GAAAGAAGCGCATACAGAG-TAAAAT---
6  TAGTATCAAACATTGATATTACGTG--------------------------TTTTCATTATATCTATTAT-TTAAA----
7  CTACAGAACA-----------------------------------------GAAAGAAGCGCATACAGAG-TAAAAT---
8  ---------------------------------------------------AATTATTAACTAATGTACC-AAAAAT---
9  ---------------------------------------------------AAATTTACAAAATAAATGC-TAAAAT---
10  -----------------------------------------------------------------------ACAAAT---
11  ---------------------------------------------------GGAGAACTTCTCCTTCCAA-TAAAAT---

  
0  A_AATATTTTATTTTAA_A__T_G_CTATTTTTC__TTTAAACCTTT___TTAAATTTCCAAGCTTCATTTCACCTTT_A
1  A-AATATTTTAATTTAA-AAAT-A-TAATGTTAG--ATTAAAACAAT---T--AAGTACCAATGACATGAAACTCAAT-A
2  A-AATATTTTATTTTAA-A--C-A-CT-TGTTGCAAATTATATTTAT---ATTAATTGCCTCTTTTTATAGAGGCTTTTA
3  A-TACAATTTATTTTAA-A--T-A-TGTTTGAAT--TATTGACAAAA---AATTAGTGAATGATAGTATTTAATTATA-A
4  A-ATAATTTTATTTTAC-G--T-G-CTATCTTTT--TTTAAAGATATTATTTTTTTTTGAAAAATTGATAACTTTTCT-A
5  ATAATATTTTATTTTAT-A--T-GGCTATCTTTA--TTTTTCAGCGA---ATAGAATCAGGCAACAATTAAT--------
6  A-AATATTGTATTTTAA-A--T-G-CTTTAGAAA--AATTTCAGTAC---GTTTTTAGTACGCTCTATAACTACTAAT-T
7  ATAATATTTTATTTTAT-A--TAG-CTATCTTTA--TTTTTCAGCGA---ATAGAATCAGGCAACAATTAAT--------
8  A-AATATTT-ATTTAAAGA--T-G-ATATTTTT---TAGAACACATT---ATAATAAAAGTATGATCCTAAAATAACA-C
9  C-AATATTTTATTTTCA-A--G-G-AAAAAG-------------------------------------------------
10  A-AATATTTTATTTTTT-A--A-G-CCATTCAAA--GTTATAACATT---TCTTTTTATAAGGCATTGCTTAAAAATA-A
11  A-AATACCTCCTTTCTT-A--T-G-AAGCATTCT--CCTCTCTCGTG---TGAAACAGTCCTACTGCGGTAGGGCTGT-T

  
0  __TTACTGCAAGCAGGTTGTCATACGCTTGCCATATAAAAGAGACTGGACATTTTTGTCTCGGAGGTGAAATAA______
1  --ACAGCATAAAAATGGATTCAAATTTAAATCATAAATCCAACAAATATTAATTATCATCAACAAACAGTGAGCAACAAT
2  --TTTTTTTAAGTA--TTTTTATAAATTATAAAAATTTTATGATAATTATTTTAAATAAGGAATAAATA-----------
3  --TATGTTTAGGAGGGGGTCTA----------------------------------------------------------
4  --TTTATGTTATATTTTTATAAAAGATTTTATAATAGTATTATTATATTCTATAACGTCACTAGGATGATATAGTATGTT
5  --------------------------------------------------------------------------------
6  --ATTAATTAAAACCATAGTGTTAGTTTTATCTTTGTCAGTAATTTTCAACAAAAAACAAATCCCGACCTTCACCGTAAT
7  --------------------------------------------------------------------------------
8  --AAAGGAGTCGTTT-----------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  AATGCCTTAAAGAAGATTTT-ATTCTTTTCCCATAAGTTTTGTTGAGAATGTGTT-------------------------
11  --TCGCCATTTCAAAACGTAAGCAGAAAAGTTGTGAAAGTGGTGCAAATCGTCAATAATAAAAGGACGTATGGAATGAAA

  
0  ________________________________________________________________________________
1  TAATTAACCTACGACAAAGTAAAAACTCGCCTAACTGTATGCAATTTAACCAATAAAGTTTGCTGTCACAATTTTAAACA
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  ATATAGTTTTTTTATATTAAAAAAGTAGATTAAAAAAGATAAAGAATACT------------------------------
5  --------------------------------------------------------------------------------
6  ATTAATTGTCAGATGATACTGTACTAATTGACTGTTTAGAACTACTCTTATAATTCTTAAGGCAAGTTCTACATTTCAAA
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  GGAGGGAAGATTT-------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  CCCTTTATCCAATTAATGTCACATTCATAACACCAAATGTCTTTATAATCCCCGTTCGTTAACTCAGCACTTATACACTT
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  TTGCAAATAAATACATTTAACCAAGCTGCAATTGACAGAATATTGAGAATTATAGCATATTAATTGCAATGTAAGCATTT
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  AATCGTGTTCAGCGCATGAATTAACAGGATGATGTACATGTTCAAAATAGAACATGTATTTGGGTCACATAAATATAAAT
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  TATATTTATTTTCCAAAGGTTGTACTAATTATCGCTTTATAATAAAAAACACTTATATACATCATTTTACATTTATTCCG
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------

  
0  _____________________________________________________________
1  AGAGAAAATA---------------------------------------------------
2  -------------------------------------------------------------
3  -------------------------------------------------------------
4  -------------------------------------------------------------
5  -------------------------------------------------------------
6  ATAAGTTGTACACTTTATTTGTATTAAAAATACACTTAATCAAATTTAAGGGGGATTTAAA
7  -------------------------------------------------------------
8  -------------------------------------------------------------
9  -------------------------------------------------------------
10  -------------------------------------------------------------
11  -------------------------------------------------------------

Complementary Intergenic Regions

IGR  -   2192903  2193067  ()  2  yoqU