BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (- 1937732 to 1938179) circular

Islands  A...ACC.CCCG....CA.CAA..CAA.ACGAA..CGA....GA.G..AGA......AACA.AACGAG....A..A.A.C
5'-   ATTTACCTCCCGTTTTCATCAATTCAATACGAATTCGATTTTGATGTTAGATTTTTTAACATAACGAGTTTTATTATATC
           |         |         |         |         |         |         |         |
           1938170   1938160   1938150   1938140   1938130   1938120   1938110   1
           |         |         |         |         |         |         |         |
3'-   TAAATGGAGGGCAAAAGTAGTTAAGTTATGCTTAAGCTAAAACTACAATCTAAAAAATTGTATTGCTCAAAATAATATAG
Islands  .,,,.GGAGGGC,,,,G.AG..AAG..A.GC..AAGC.,,,,C.ACAA.C.,,,,,,..G.A..GC.C,,,,.AA.A.AG

  
Islands  ACAA.A.GACGAA..AGGAAG......CGAGAAGAA.A..G.CA.AGCCAGA.G..AC.C.G.CGACCCC..C.C.A..A
5'-   ACAATATGACGAATTAGGAAGTTTTTTCGAGAAGAATATTGTCATAGCCAGATGTTACTCTGTCGACCCCTTCTCTATTA
           |         |         |         |         |         |         |         |
  938100   1938090   1938080   1938070   1938060   1938050   1938040   1938030   1
           |         |         |         |         |         |         |         |
3'-   TGTTATACTGCTTAATCCTTCAAAAAAGCTCTTCTTATAACAGTATCGGTCTACAATGAGACAGCTGGGGAAGAGATAAT
Islands  .G..A.AC.GC..AA.CC..C,,,,,,GC.C..C..A.AACAG.A.CGG.C.ACAA.GAGACAGC.GGGGAAGAGA.AA.

  
Islands  ....CC.ACGAA.,,,,,CA..CC..GC,,,C.GGC...,,,,,,,GAG.ACCC.A..AACAA.G.AA.CA...C..CCC
5'-   TTTTCCTACGAATAAAAACATTCCTTGCAAACTGGCTTTAAAAAAAGAGTACCCTATTAACAATGTAATCATTTCTTCCC
           |         |         |         |         |         |         |         |
  938020   1938010   1938000   1937990   1937980   1937970   1937960   1937950   1
           |         |         |         |         |         |         |         |
3'-   AAAAGGATGCTTATTTTTGTAAGGAACGTTTGACCGAAATTTTTTTCTCATGGGATAATTGTTACATTAGTAAAGAAGGG
Islands  ,,,,GGA.GC..A.....G.AAGGAACG...GACCG,,,.......C.CA.GGGA.AA..G..ACA..AG.,,,GAAGGG

  
Islands  A..C.C..GCC...C.C...GA...ACACA.,,,.,,,G.AA.,,,.CC.,,,CAACA.A.CA...,,,,.A.G.....A
5'-   ATTCTCTTGCCTTTCTCTTTGATTTACACATAAATAAAGTAATAAATCCTAAACAACATATCATTTAAAATATGTTTTTA
           |         |         |         |         |         |         |         |
  937940   1937930   1937920   1937910   1937900   1937890   1937880   1937870   1
           |         |         |         |         |         |         |         |
3'-   TAAGAGAACGGAAAGAGAAACTAAATGTGTATTTATTTCATTATTTAGGATTTGTTGTATAGTAAATTTTATACAAAAAT
Islands  .AAGAGAACGG,,,GAG,,,C.,,,.G.G.A...A...CA..A...AGGA...G..G.A.AG.,,,....A.AC,,,,,.

  
Islands  ..CACACCA.,,,CCGGG.A.ACA.ACGC.AA.,,,,GAAG....C.C...C,,,,,.AAGC,,,,,GA.A.A.AC..AA
5'-   TTCACACCATAAACCGGGTATACATACGCTAATAAAAGAAGTTTTCTCTTTCAAAAATAAGCAAAAAGATATATACTTAA
           |         |         |         |         |         |         |         |
  937860   1937850   1937840   1937830   1937820   1937810   1937800   1937790   1
           |         |         |         |         |         |         |         |
3'-   AAGTGTGGTATTTGGCCCATATGTATGCGATTATTTTCTTCAAAAGAGAAAGTTTTTATTCGTTTTTCTATATATGAATT
Islands  AAG.G.GG.A...GGCCCA.A.G.A.GCGA..A....C..C,,,,GAG,,,G.....A..CG.....C.A.A.A.GAA..

  
Islands  C,,,G..,,,...A.....,,,...AA.,,,.CAGG...AC....AGG
5'-   CAAAGTTAAATTTATTTTTAAATTTAATAAATCAGGTTTACTTTTAGG
           |         |         |         |        
  937780   1937770   1937760   1937750   1937740   
           |         |         |         |        
3'-   GTTTCAATTTAAATAAAAATTTAAATTATTTAGTCCAAATGAAAATCC
Islands  G...CAA...,,,.,,,,,...,,,..A...AG.CC,,,.G,,,,.CC

IGR  -   1937732  1938179  ()  13  ynfC

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 - 1937732 1938179 ynfC [-]
1 Mycoplasma penetrans B/C NC_004432.1 - 811385 811417 MYPE6330 MYPE6320 [- COG3867]
2 Leptospira interrogans serovar lai str. 56601 chromosome I Sp NC_004342.1 - 4136685 4137364 LA4164 [COG3227]
3 Buchnera aphidicola str. Sg (Schizaphis graminum) P-g NC_004061.1 - 539098 539291 cysS [COG0215]
4 Leptospira interrogans serovar lai str. 56601 chromosome I Sp NC_004342.1 + 3207937 3208367 LA3237 [-]
5 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 + 933201 933944 CAC0807 [COG1278]
6 Clostridium perfringens B/C NC_003366.1 - 48260 48589 yplC [COG0397]
7 Streptococcus agalactiae B/C NC_004116.1 - 1436731 1436819 rfbD [COG1091]
8 Mycoplasma penetrans B/C NC_004432.1 - 1018014 1018102 MYPE7670 [COG1762|COG1445|COG1299]
9 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 - 1478477 1478745 araE [COG0477]
10 Vibrio cholerae chromosome I, complete chromosome P-g NC_002505.1 - 906207 906378 VC0844 [-]
11 Borrelia burgdorferi Sp NC_001318.1 + 25624 25752 BB0027 BB0028 [- -]
12 Clostridium perfringens plasmid pCP13 B/C NC_003042.1 + 13367 13653 cpb2 [-]

0  _____________________________________________________________________ATTTACCTCCC
1  --------------------------------------------------------------------------------
2  AATCGTGGTTTGTAGTAGGTTCCTACATCATTTACAGACAAACCTAAATTTTGTGTGAGTTCCCGCATTGAATACGACAA
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  GTTTTCATCAATTCAATACGAATTCGATTTTGATGTTAGATTTTTTAACATAACGAGTTTTATTATATCACAATATGACG
1  --------------------------------------------------------------------------------
2  TTTCAATTGTTATCAACTTTTATTTTTTAAATTGAAGTAGTTCCTACATTTTAGGAATCGATCTATAAAATTCAGATCAA
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------TTTATATTTAGTCCCTTGCCTTGCCTACAAGGGATTTCCTATTCCTTTCATTTACAATTC
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  AATTAGGAAGTTTTTTCGAGAAGAATATTGTCATAGCCAGATGTTACTCTGTCGACCCCTTCTCTATTATTTTCCTACGA
1  --------------------------------------------------------------------------------
2  CTTTTTTCAGAATTATGGATTTCTTACGCAGAACTTGTGTTAGTAGAATACTTAAAAATGATACGGTTTAAATACAGAAT
3  --------------------------------------------------------------------------------
4  ----------------------------------------GTTTTTATTTTAATACTCGAATTACTAAAAATTAACTATG
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  ATACGTATAAAATCCAAATTTTTCTTGACATTTATACACATAAATATTATGATTTATATAGGTAATCGCTTTCATAAAAT
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  ATAAAAACATTCCTTGCAAACTGGCTTTAAAAAAAGAGTACCCTATTAACAATGTAATC_ATTTCTTCCCATTC___TCT
1  --------------------------------------------------------------------------------
2  TTATGATACTTCATCGTATCGGGATGAATGGAAGTTTAAAATAAATTCTAAACAACATA-TATTGTATTTCTTT---TTT
3  ------------------------------------------------------TAATT-AATCCTGGTGTTAT---TTT
4  GATTTCGCAAAGTTGTCGAAGTTCTTACAAATTGCACCTAACAAAGAATTATTGGCTTT-TTTTGAGCGAGATC---TCA
5  ----------------------------AGTTATTTCCTTTCCTTTGTTAAAATATAGT-GTTATTTAAGTGAG---TTT
6  -------------TTTTATATCCCCCGTTATTTTTTTTCAAGTATTAATCTCCCCTTTT-TTGATAACGATTAA---CAC
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  ATATTACCCTTAGGAAATCAAATGATTATAAGTCATATATGAAAACGTTATATATAATTGATATGTTTACATTTGTAACT
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  TGCCTTTCTCTTTGATTTACACATAAATAAAGTAATAAATCCTA_______AACAACATATCATTTAAA_ATATGTTTTT
1  --------------------------------------------------------------------------------
2  GAGAACATTTTTATAAAAAACTTTTCTCAAATTTTTTTTGATCT-------CTTGTTTTCGAACAATCG-TGTATTTTTA
3  TAATGAATTTTTTAATTTAAAAA-AAATTAATTAATTTGTTATATTTTTATATAAACATATCATTTAAA-AT---TTTTT
4  TAGTTCTAACCTTGGAAACAAGCCTATAGTATTATTTTTATTCG-------TCTTCATAATCATTTTGA-CTATATTTGG
5  TATTATATCATAATACAAAAACATATAAAATGTTTTAA-TCATA-------TTGCATATGTAAGGCGATTATAAATTTTA
6  TTGCACTGAAATTATACCATATAATTACCATAACCTCACTAAAT-------TTTTGAATATTTTTTAAA-ATATTTTTGA
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  TAGATTTCTCTTTGATTTCCACATATATAAATCTTAAGGAGGAG-------TTTTC------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  ------------------------------------------------------------ATATTTATT-AT-TGATTTA

  
0  ATTC_AC_ACCA_________TAAA_C_CG__GGTA____TACATACGCTA_A____TAAA____AGAAGTTTTCTCTTT
1  --------------------------------------------------------------------------------
2  ATTCTAA-AAAA---------ATAA-T-CT--AATT----TCAATTTGGTG-A----TGGA----ATAAGATTCGT-TTT
3  ATAA-A----------------AAA-A-TA--GATA----TTAATAT-----A----TCTA----ATTAGTTTAACATAT
4  TTTT-TT-AG-A---------TAAC-A-CTTTGCTC----TTGAACTGCCA-G----TAAC----AGCACAGGTTGATTA
5  AATT-AT-TAAA---------TACA-C-AG--TATA----TT-ATAGGATTTA----TTGT----ATATATTTAATTATT
6  ATAC-AA-TTCAAATTTCAATTAAA-CACA--TCTAACCTTACCCACTCTA-AATTGTTAA----ACTTATTTTTAATAT
7  -----------------------------------G----ATAAAGAGTAA-A----GGGA----TGAAATATTCCCTTT
8  -------------------------------------------------------------------------------A
9  --------------------------------------------------------------------------------
10  ----------CT---------TAAG-C-CT--ATTA----AACAAAAAACA-A----GAAT----T-AATTATCCTTGTT
11  ----------------------------TA--AGAT----TACCTTAATAT-T----ATAC----TTAGATTGTCAATAT
12  ATTT-TCCATTA---------TAGTGC-TA--GTTA----TTTTTACTATT-A----TAAAGTTTAATAATTTACATTGT

  
0  CAAAAATA_A__GCAAAA_AG_ATATATAC__TTAAC______AAA_GTTAAAT__TTAT_TTTTAA__ATTTAATAAAT
1  -----------------------------------------------------------T-TTTTAA--ATTTATTAAAT
2  GTAGAATA-T--TCTTAT-TT-ATAAAAA----TAAT------ATTTGTTAATT--TTTT-ATGTTT--ATGTAAAAAAT
3  TGATATTA-T--AGAAAA-TA-ATATATT---TTATT------TTT-TTTAAATATTTCA-TGAGAA--ATTT-------
4  GAACTATAGA--ATATAT-AGTATTTTTACGTTTAAA------CGA-TTAGAAT--TTAT-TTTTAA--ATTTACACTGT
5  AAAAAATT-T--ATCAAA-AT-ATATTTA----TAAA------AAA----AAAT--TTAT-TGAAGA--ATATAATAATG
6  GAAAATTT-A--C---AA-TT-ATTAGTGC--TATAA------TAA-GTTAAATC-TTGT-TTTTTA--ATTTAATAAGA
7  TTTAGTGT-A---CAATA-AA-CGA-AGAA--TTAA--------AA-GTTAAAC--TTAT-TTTTAA--AGGAGCAAGGA
8  TTTAACTT-T--TTGCAA-AG--TAAATAG--TAAA--------AA-GTTAAAT--TTAT-TTTTTA--TTTTA-TAAAG
9  --------------------------------------------------------------------------------
10  AAAAATGA-A--AAAAAT-CG-CTTTATAC--ATTTT----------GTTAAAT--TTAT-TTTTAAAAATTTAACGAGT
11  AAGGAAAG-T--CAAACG-AC-CAAATTTC--AAATT------GTA-ATTAAAT--TTAT-TTTAAA--CTATAATAAAC
12  TTAAACTA-ATTGCTAAATAG-AATTTTAA--CTCATGTTTTAAAA-GTTAAAT--ATATATTTTAA--ATTTAAGGTGT

  
0  CAGGTT__TACTTTTAGG______________________________________________________________
1  CAAAAT--GGAGTAAAA---------------------------------------------------------------
2  TTA-TT--TACTTTTAAGGTATATTTTTTTCTAGTTCAATCTCCTTAAATTTAACCTTTATGAATATTATTTTTTCTACA
3  --------------------------------------------------------------------------------
4  CTGGTA--GACCAATTCTAATCAAGGACCTCATATAAAGATCCTAAAAGAATTTTCGCCTAATTAAACTTTACGTAAAAT
5  AAAGGA--GGAAATATATATGAGTAAAAAGCTAACTAGAACAAAACTTAAAATGGCTGCAATAGAAAAAAACATGATGGA
6  ATTTTT--ACGCATAATATAAGGGATGGAATAAAATTTGAAATAAATTATAAGGCAAAGGATTTTAAT------------
7  --------------------------------------------------------------------------------
8  CAATAA--TAAATTTGTAAGGAGGTTGATAATT-----------------------------------------------
9  --------------------------------------------------------------------------------
10  TAGCAT--AAAAAAAATAAAAAATTAAAGTTAGAATAAAATGTGAAACACAGGTAAAAATAGGAGTAAAAA---------
11  AAGGATAATAATTTTAAAAGAATGGAGAATA-------------------------------------------------
12  CCCACG--GGGACATCTTTTTGTTTTTAAAAGGTAAATATGAATAAAATTTAGATAAAAGTGTAAAAGAATTATTTTTAT

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  TGTTATTTTTAGAATAACGGATTTTTAAATGATTATTTATATCTCGCTTAATGTTTAAGGGTTTTCGTAGAAGACAGATT
3  --------------------------------------------------------------------------------
4  CGCCGTTTTGCGGTTTTCAAAAAAATGAAAAACTATTTTAACATGAC---------------------------------
5  AGTAGGAGCTGAATTATATAGTAATCTTGAAGTAAGAGATGAAATTAAAAAGAAGCTTAAAAATAAAAAAGTTAAGACAT
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  TTTAAATTTGTTAAAATTTTGATATAATTGAATTGTAAAAAAAATTTCAGGGGGGAATATAA------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  TAAAATTAAAACAGAGGGATTGA---------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  AAAGTATAGATTAGCTTAATATATATTAAAAAATTTATAATAATATCGAAAATAAGTTAAGGTTTATTTGTCAACTTTAT
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  AATAAAATACTGTAAATATATATTCTTATGTCAATATTATAAGGCGAAATTAAGTAATAAGTATTTTATAACAACATATA
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  TTTGGAATATAAATAATATAAAAAAGTTGATTTATTTATGAAACTGTGGTAATCTTAATCAAGACTTAAATTTAATAGTA
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  AATAATGCAGCACAATATATTTCAATTAGCACTTAGTAAGATTTGGTAGTTAAGGAATTTTATTGGTGAGGTATTACAAT
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------

  
0  ______________________________________
1  --------------------------------------
2  --------------------------------------
3  --------------------------------------
4  --------------------------------------
5  GAGTTTAAGATCAATAAAATTTTGGAGGTATACAGTAT
6  --------------------------------------
7  --------------------------------------
8  --------------------------------------
9  --------------------------------------
10  --------------------------------------
11  --------------------------------------
12  --------------------------------------

Complementary Intergenic Regions

IGR  +  1937732  1938179  ()  12  alsT