BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (+ 1751 to 1938) circular

Term (99.28)%  ---------------------------------------------------CACAGTCTGTCCACATGTGGATAGGCTGT
Islands  CAGGACCGGGGA.CAA.CGGGG,,,G.G.GAA.AAC....CGGAAG.CA.ACACAG.C.G.CCACA.G.GGA.AGGC.G.
5'-   CAGGACCGGGGATCAATCGGGGAAAGTGTGAATAACTTTTCGGAAGTCATACACAGTCTGTCCACATGTGGATAGGCTGT
           |         |         |         |         |         |         |         |
           1760      1770      1780      1790      1800      1810      1820      1
           |         |         |         |         |         |         |         |
3'-   GTCCTGGCCCCTAGTTAGCCCCTTTCACACTTATTGAAAAGCCTTCAGTATGTGTCAGACAGGTGTACACCTATCCGACA
Islands  G.CC.GGCCCC.AG..AGCCCC...CACAC..A..G,,,,GCC..CAG.A.G.G.CAGACAGG.G.ACACC.A.CCGACA

  
Term (99.28)%  G-------------------------------------------------------------------------------
Islands  G...CC.G.C.....CACAAC..A.CCAC,,,.CCACAGGCCC.AC.A..AC..C.AC.A......A.,,,.A.A.A.A.
5'-   GTTTCCTGTCTTTTTCACAACTTATCCACAAATCCACAGGCCCTACTATTACTTCTACTATTTTTTATAAATATATATAT
           |         |         |         |         |         |         |         |
  830      1840      1850      1860      1870      1880      1890      1900      1
           |         |         |         |         |         |         |         |
3'-   CAAAGGACAGAAAAAGTGTTGAATAGGTGTTTAGGTGTCCGGGATGATAATGAAGATGATAAAAAATATTTATATATATA
Islands  C,,,GGACAG,,,,,G.G..GAA.AGG.G...AGG.G.CCGGGA.GA.AA.GAAGA.GA.,,,,,,.A...A.A.A.A.A

  
Islands  .AA.ACA..A.CCG..AGGAGGA.,,,,
5'-   TAATACATTATCCGTTAGGAGGATAAAA
           |         |        
  910      1920      1930      
           |         |        
3'-   ATTATGTAATAGGCAATCCTCCTATTTT
Islands  A..A.G.AA.AGGCAA.CC.CC.A....

IGR  +  1751  1938  ()  21  dnaN

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 + 1751 1938 dnaN [COG0592]
1 Clostridium tetani E88 B/C NC_004557.1 - 50965 51224 CTC00093 [COG0592]
2 Oceanobacillus iheyensis B/C NC_004193.1 + 3543187 3543300 OB3407 [COG0583]
3 Pyrobaculum aerophilum A NC_003364.1 + 428534 428574 PAE0770 PAE0771 [COG0540 COG0456]
4 Clostridium perfringens B/C NC_003366.1 + 2792737 2792952 CPE2445 [COG2220]
5 Clostridium perfringens B/C NC_003366.1 + 1784 2077 dnaN [COG0592]
6 Clostridium perfringens B/C NC_003366.1 - 1716530 1716807 CPE1459 CPE1458 [COG0534 -]
7 Oceanobacillus iheyensis B/C NC_004193.1 + 1644 1829 dnaN [COG0592]
8 Buchnera aphidicola str. Sg (Schizaphis graminum) P-g NC_004061.1 + 166270 166374 nuoCD nuoE nuoF [COG0852|COG0649 COG1905 COG1894]
9 Thermosynechococcus elongatus BP-1 Cya NC_004113.1 + 2338968 2339821 tlr2251 [COG0003]
10 Listeria innocua Clip11262 B/C NC_003212.1 + 1675 1867 dnaN [COG0592]
11 Listeria monocytogenes strain EGD B/C NC_003210.1 + 1674 1866 dnaN [COG0592]
12 Lactococcus lactis subsp. lactis B/C NC_002662.1 + 1726 1881 dnaN [COG0592]
13 Staphylococcus aureus subsp. aureus N315 B/C NC_002745.1 + 1879 2155 dnaN [COG0592]
14 Staphylococcus epidermidis ATCC 12228 B/C NC_004461.1 + 1718 2025 SE0002 [COG0592]
15 Clostridium acetobutylicum ATCC824 B/C NC_003030.1 + 1808 2063 dnaN [COG0592]
16 Deinococcus radiodurans chromosome 1 T/D NC_001263.1 - 1183 1903 DR0001 [COG0592]
17 Bacillus halodurans B/C NC_002570.1 + 1934 2102 dnaN [COG0592]
18 Buchnera sp. APS P-g NC_002528.1 + 120539 120630 ydgO [COG4658]
19 Campylobacter jejuni P-e NC_002163.1 - 679498 679623 Cj0723c Cj0722c Cj0721c [COG0501 COG2890 -]
20 Ureaplasma urealyticum B/C NC_002162.1 + 153838 153975 ABC-1 secA uvrB [COG1136 COG0653 COG0556]

0  ________________________________________________________________________________
1  TTAACATGTGTTGATTATTTTATCAAAAATACATGTGGATAACATAAGTTT-----------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  TTAACAAAGTACATAATAACTGTATATTATCTGTGGATAACCTGTGAATTATTATGT-----------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  CAGGGAATCCTAAAGAAACGTTTGTACTGGTTGACAAAATCTCTTTTTTTAGTCTGGGGGCGATCGCGGGCAAGGGGAAC
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  GTAGGAAACTTTGGGAAATGTAATCTGTTATATAACAGCACTAATAATAACTGTCATTTTTTACATTTCTATATACTAAT
14  TGGGAAATAAATCCATATTGAATAAATTGAAAATTAGCAGATTGTAAACTGTCTTTTAGGGAATAATTACTATGTAAATC
15  TAACAGTTGTTTATTATTTATCTATAATAAATTGTGGATACTTTTTATATTTT---------------------------
16  GGTTGCCGGGCCAAGAGGGGCGAAGGGCCCCTTTTTTGGGCCAGTTTGGTATGCTGGGAAGAGAATGAGATGCCGGAAGT
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------
19  --------------------------------------------------------------------------------
20  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  CGTAGAAATACGGAGATCTGCCCCCTGTAACCTGTGGAAAACTCCAGAAGGCCTGTGGAAAATTCTGGGGAAAACCTGTG
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  GTGACAA-------------------------------------------------------------------------
14  AATTCCTAAACACTTAAAAAGATGGGGAGTTGTCCCTC------------------------------------------
15  --------------------------------------------------------------------------------
16  ATGCAGATTATGCCCCCAAAAGTTAGGTCATAGGCTGAAACGTTCCAAAATCCCGTTCCAAATGGCGGTGAAACTTTTCA
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------
19  --------------------------------------------------------------------------------
20  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
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5  --------------------------------------------------------------------------------
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9  GAAAACCCCGGAAAAACTCTGAAAAACTGTGGAAATCTTTTTTATTCTTTTT----------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  CTTTCTGTGGAAAAACCTGTGGATATCCTGTGGATAAGTGCCAAAATCCTGTGGATAAAATTGTGGATAACTTGCCCCTA
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------
19  --------------------------------------------------------------------------------
20  --------------------------------------------------------------------------------

  
0  ______________CAGGACCGGGGATCAATCGGGGAAAGTGTGAA_TAACTT_TTCGGAAGTCATACACAGTCTGTCCA
1  --------------ATTTTTTTTTCTTTAAAACTGTGGATAAGGTT-AAATTT-TATTTCATACTTATCCACACTTATTT
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------TTATTATTTTTTGCCTGTTATTTTATTGTGGA-TAATTG-TTCACA-GTAATCTACAGGTTATCCA
6  --------------------------------------------------------------------------------
7  --------------------AGATATCCCCATGTGTATACTGTGTA-AAACGT-GTCTCAC-TCATGCACAGTTTATCCA
8  --------------------------------------------------------------------------------
9  --------------CCGCCGGGATAATAGCCTGTGGAAAAACCCCT-ACTTTT-TCCACAAGTTTTCCACAGGGGGTAAG
10  -------------------------TAGACCTGTGTACAATGTGGA-TAACTG-GAACATACTTACCCACAAGTTATCAA
11  -------------------------TAGACCTGTGTACAATGTGGA-TAACTG-AAACATACTTACCCACAAGTTATCAA
12  ----------------------------ACCTGTGGAAAACTCAAG-GACTTA-TAAAATGTTTATTCTTTAATTATCCA
13  --------------GATGAGCAAAACTCATTTTGTGGATAATGTTT-AAAAGT-CATACACACCATACACAAGTTATCAA
14  --------------TGAATAACAATAGCAATTGTGGATAATGTGAA-AAAATAATACACAA--CATACACAGTTTATCCA
15  --------------ACTTTGCATGTTAATACTGTTGATAACGTAAAGTAGTTG-TTAATAAATTATCCACAGTTATTTTT
16  AAAATGCCCTGTGGATAACCCCCCAAGTTATCCACAGCTTATCCAT-CAGGTT-TTCGGG-GTTATCCACACCCCCTC--
17  --------------------------ATTTGTGGGGAA--TGTGAA-TGAATC-GTTCGTACTTTTGCACAGATTATCCA
18  --------------------------------------------------------------------------------
19  --------------------------------------------------------------------------------
20  --------------------------------------------------------------------------------

  
0  CATGTGGATAGGCT_G_T_GTT__T_CC___TGT__C_TTT_________TTCA___CA_ACTTATCCACAA_ATCCACA
1  TTTTATGTAACTCA-T-T-GAT--T-TT---TAA--G-AGT---------TACA---AA-GGTTATTAACAA-ATCAACA
2  ------------------------------------G-TTG---------TTGT---GC-CTCCTTCTCTAT-CTATAAT
3  --------------------------------------------------------------------------------
4  ---------------------------------------------------------------------ATA-TATCACT
5  CAAGCAAAAAATCT-C-T-GTA--AGCC---TTG--C-TATACAAAGGTGTCCA---GG-TTTTATCCACAA-ATCCACA
6  ---------------------A--G-AG---ATT--A-ATA---------GCAA---TA-AAATTTGAAGGT-TTTAAAG
7  CATGTGGAAAACCT-T-TAGTA--A-AG---TGT--A-ATA---------ATGA---TA-G-TTATCCACAT-AATCACA
8  ---------------------------------------------------TTT---TT-TTTAAAAAGAAT-ATAAATT
9  TGGCTCAAACCCGC-T-T-GCA--G-AG---AGC--G-TTT---------CCGA---AA-AGTTTTCCACAT-TTCCACA
10  CATGTGGAAAACTT-TAT-GTC--G-CA---TGG--C-TCA---------AA-A---CATACTTATCCACAA-ATCCACA
11  CATGTGGAAAACTT-TAT-GCA--G-CA---TGG--C-TTG---------TAAC---CT-ACTTATCCACAA-ATCCACA
12  CAGGGGAAAAGCTT-A-T-ACT--T-CTAAGTGG--A-TTT---------GTC---------TTATACAGATTATCCACA
13  CATGTGTATAACTTCG-C-CAA--A-TC---TAT--G-TTT---------TT-A---CG-ACTTATCCACCA-ATCCACA
14  CATGTGTATAA-CT-G-T-GCTATT-CG---TAA--G-TTT---------TTTA---GA--CTTATCCACCA-ATCCACA
15  TTCTTGCAAACCTT-GAT-ATT--T-GT---TGA--G-TTT---------ATCC------ACTTATCAACAA-ATCCACA
16  --TGTGGAAAACTT-T-T-GTC--C-TC---TGGGAC-GGC---------TTCAAGGTG-AGTTTTCCACAGTATCCACA
17  CATGTGCAAAA-CT-A---GTA--A-AA---TAA--CGTTT---------TTCT---CT-TGTTATCCACAA-ACTCACA
18  --------------------------------------------------------------------------------
19  --------------------------------------------------------------------------------
20  ----------------------------------------------------------------------AG-ATCTATC

  
0  GGCCCTACTATTACTTCTACT_ATTTTT__TA__TAA______ATA_T___ATATAT_TA_A_TACAT_TAT__C__C__
1  GCCCCTACTACTATTACTACT-AATTATATTC--TTA------ATA-T---ATCTAT-TCTA-TATATATAT--A--C--
2  TAGTATAGGCTGAGCGCTTTT-ATTTTT--GAAATAA------ATA-T---ATATAA-TA-A-TAC-T-TAT--T--A--
3  ---------------GCCCTC-ATTTTT--TA--TAA------AGA-T---ATATAA-AC-A-GTAAC-TCA--C--A--
4  CCTCAAAATTTGACCTTTACT-GACCTT--AA--TAC------ACAAT---ATATAT-TA-A-TACAT-TTG--A--C--
5  GG---TACTATTACTATTATT-ATTATA--TT--TAT----------T---ATCTAT-TA-A-TATAT-CTA--T--T--
6  CTATTTAAAAGGAAAATTTTG-TTCCTT--TA--TAA------ATA-T---ATATAGGTA-A-TATAT-TAT--T--T--
7  GGCCCTATTATTATTATTACT-GTATTT--TA--TAA------ATA-A---AAATAA-TA-AATATAA-CTT--C--CAA
8  TTTCATACTACTAGATCG--T-ATTTTT--TG--TAA------ATA-T---AT-TAT-TA-A-TA--T-TAA--A--A--
9  GGCCCTACTACTACTATAAGA-ATATTT--AA--ATA------ATT-T---AG-TAG-TA-G-TAGTG-GAT--C--C--
10  GTGCCTATTACTATTACTACG-ATTTTT--TA--TTA------ATT-A---ATTAAA-GG-T-TTTTG-AGG--T--T--
11  GCGCCTATTACTATTACTACG-ATTTTT--TA--TTA------ATT-A---ATTAAA-GG-T-TTTTG-AGG--T--T--
12  GGACCTACTACTATTACTATT-ATATTT---A--TAA------AAA-G---AAATTA-TA-A-AGGAA-TCT--C-----
13  GCACCTACTACTATTACTAAG-AACTTA-------AA------ACC-T---ATATAA-TT-A-TATAT-AAA--C--G--
14  GTGCCTACTACTATTACTATG-AATTTA-------AA------ACC-T---ATATAA-TT-A-TATAT-AAA--C--G--
15  CTCCCTACTACTATTACTACTTAGTTTT--TA--TTATACCTTATC-T---ACTTTT-CT-A-TTCTT-TAT--AATT--
16  GGCCCTACTACTGCTACTACT-GTTTTT--AT--TTT------TTA-A---GAAGAA-CA-G-TTAAC-AGA--T--A--
17  AGCCCTATTACTAGTACTTCT-ATATTT--AA---AT------ATA-A---ATAGAT-TA-A-TAATA-AAA--G--G--
18  --------------------A-GTTTTA--TA--TAA------ATA-TATTATATAT-TA-A-TACAT-AA------C--
19  ------------TCTTTAATC-CTTTTT--TA--TAA------ATA-T---ATACCA-AC-T-TAGTT-GAA--A--A--
20  TTTTCCTTAATTAATT--ACT--TGATT--TA--TAA------TTA-T---ATATTT-TA-A-TACTA-TATTAC--C--

  
0  GTTA____GGAGGATAAAA_____________________________________________________________
1  ATTA----CTGTGTATTATTTAAGGAGGTTAAAACA--------------------------------------------
2  AAAA----AGTTAATAAAAGAGGGATTTTAACC-----------------------------------------------
3  T-------------------------------------------------------------------------------
4  ATAC----TTAATCAATGTAATACACTTATTCATCTATTATTTTTATTTAAATCTCCTTAAATAAATTCAATTCAAATAA
5  ATGC----AAAAATTCACACTGTGTATAACTTATGTGAATAAGTCCTAAAAGGAGGGTTTTTATT---------------
6  AAAA----TACAGAGGTATATTTAGGTTTTAGATATGTTATCATATCTAAAACTTAAATTAATTTATAAGAAATTAAGGC
7  ATTA----GGAGGGAACTAAA-----------------------------------------------------------
8  ATTT----TTAGGTTAATGAAAAAATGAGAAATCT---------------------------------------------
9  -TTA----AGATCCTAATGCGAATAAAATTTTTACAGAGGAAAATAAGGATGCGATCGAGGTAACTCGGGGTTAGTTTGA
10  TTAC----AAAATATAAAAAAATGGGGGATACTC----------------------------------------------
11  TTAC----AAAATATAAAAAAATGGGGGATACTC----------------------------------------------
12  --------------------------------------------------------------------------------
13  ACTG----GAAGGAGTTTTAATTA--------------------------------------------------------
14  ATTG----GAAGGAGTTTAAATTTA-------------------------------------------------------
15  GTTAATAAGGAGGATATTATA-----------------------------------------------------------
16  GGCC----AGGTGACCTTGGGCCTTCCACAAAGGACTCTGGAAAATTCCAAAAGGAGGTTCCGAGTTGAGATCCAACGTG
17  AGTC----TTATTACG----------------------------------------------------------------
18  GT-------GAGAAAAAAATGAACTTTCCCTGCATATATCATGTTTATAGTATTAGAAAAATA-----------------
19  GAAT----ATTATTTTAGATTTTAAACTATTAACTTTATTTCATTATTTTAAGCTAGAATTCGCAAAAAACTAATCAAGG
20  TTTA----AATCAAATTAAATTATTGATTTGTTTTATAATTAAATGTTAAATAGCTTTACTTAAATAAAGGATGGCTTT-

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  ATTATTCTTATATTTTATGTTTATTTATATTATATGTGTCAATAATATAAATAATTTTTATAGGAGGCTTTTTA------
5  --------------------------------------------------------------------------------
6  TAAAAATATAAATTTAAATTATTATATATAAAATAATTTTATATATTTAGCTTATATAAAATATGAATTATAATGTGTGG
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  ATGTGGGTTAGAGCTTGAGGAAATCATTGGTTGAGAGGATGGGGATATCGAGGAAGATCAGGAAACCAAGAACAAACGGT
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  AGGCGTCTCAGGACTGATCGTTCTTCAGATTCCAGACCCGAAGCTCAGAACAATTTCATGTCCAGCACGAAGTTTTCCCC
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------
19  AAAAATA-------------------------------------------------------------------------
20  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  GAATAATTTTTTAGATACACAGGGGGAAAA--------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  TGAGACGGTTAGAGGATCGAAAGTTGCAAGAGCTTGGGGAAAACCTTGGGGAATTTGGGGAAAACTTCGAAAAAAGAATC
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  AGGTTGTGGATAAGTTCTGTGGATAAGTCGGGAGTTGGCTGCAAAAACCCTCTACTGCAAATGCCATTGCCAAAAAGGCC
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------
19  --------------------------------------------------------------------------------
20  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
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4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  TGACCGTAGCTTCAGAACCTTCTAATGAGGATCCATTTGCGCCGCGGAAAATTTTTTTGGCCTGAGAATGGTCTACAAGC
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  GTCCTAAACGCGGTTTTCTCCCCTGAAATCTGCCGGGCAAACGGCGTAGAATGGCCG-----------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------
19  --------------------------------------------------------------------------------
20  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
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5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  CCCTAGAAGGCCCGCGATCGCTGCCCCGAGTAGGTTTTATCGTTGAACACATTTGGCTGCCCATAGAGGCGATTTTACGA
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------
19  --------------------------------------------------------------------------------
20  --------------------------------------------------------------------------------

  
0  ___________________________________________________________________________
1  ---------------------------------------------------------------------------
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8  ---------------------------------------------------------------------------
9  GGGGTTCTTTAGAAAACCTTGGGGCAGCCGTTTGCCGATAGGATAGTCCAAGCAGCTATCGTCCTCAAACTTGCC
10  ---------------------------------------------------------------------------
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