BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (+ 1450602 to 1450836) circular

Islands  C.GAGAGCA.AGAC.C.CAGC......CA.A.AGAGAAGAAG.GAA.,,,CA..AA.GA.AA..A..A.C,,,,,G,,,.
5'-   CTGAGAGCATAGACTCTCAGCTTTTTTCATATAGAGAAGAAGTGAATAAACATTAATGATAATTATTATCAAAAAGAAAT
          |         |         |         |         |         |         |         | 
          1450610   1450620   1450630   1450640   1450650   1450660   1450670   14
          |         |         |         |         |         |         |         | 
3'-   GACTCTCGTATCTGAGAGTCGAAAAAAGTATATCTCTTCTTCACTTATTTGTAATTACTATTAATAATAGTTTTTCTTTA
Islands  GAC.C.CG.A.C.GAGAG.CG,,,,,,G.A.A.C.C..C..CAC..A...G.AA..AC.A..AA.AA.AG.....C...A

  
Term (61.80)%  ---------------------------------------------------------------------------GCTGC
Islands  .,,,,.AA..A.AA..G,,,..C.C..CG.GCG.GC.A.AA.,,,GGAAGACA.CAAG,,,.AAC.GACGA.,,,GC.GC
5'-   TAAAATAATTATAATTGAAATTCTCTTCGTGCGTGCTATAATAAAGGAAGACATCAAGAAATAACTGACGATAAAGCTGC
          |         |         |         |         |         |         |         | 
  50680   1450690   1450700   1450710   1450720   1450730   1450740   1450750   14
          |         |         |         |         |         |         |         | 
3'-   ATTTTATTAATATTAACTTTAAGAGAAGCACGCACGATATTATTTCCTTCTGTAGTTCTTTATTGACTGCTATTTCGACG
Islands  A....A..AA.A..AAC...AAGAGAAGCACGCACGA.A..A...CC..C.G.AG..C...A..GAC.GC.A...CGACG
Term (87.78)%  ---------------------------------------------------------------------------CGACG

  
Term (61.80)%  CTTTTGGGCAGC---------------------------------------------------------------
Islands  C....GGGCAGCGA....G.....A.AAGAG,,,.GAAGA.GA...ACG..C.CAA..AGAGAGGAGAA..CGA.
5'-   CTTTTGGGCAGCGATTTTGTTTTTATAAGAGAAATGAAGATGATTTACGTTCTCAATTAGAGAGGAGAATTCGAT
          |         |         |         |         |         |         |      
  50760   1450770   1450780   1450790   1450800   1450810   1450820   1450830   
          |         |         |         |         |         |         |      
3'-   GAAAACCCGTCGCTAAAACAAAAATATTCTCTTTACTTCTACTAAATGCAAGAGTTAATCTCTCCTCTTAAGCTA
Islands  G,,,,CCCG.CGC.,,,,C,,,,,.A..C.C...AC..C.AC.,,,.GCAAGAG..AA.C.C.CC.C..AAGC.A
Term (87.78)%  GAAAACCCGTCG---------------------------------------------------------------

IGR  +  1450602  1450836  ()  28  ykvW

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 + 1450602 1450836 ykvW [COG2217]
1 Streptococcus mutans UA159 B/C NC_004350.1 + 1034393 1034633 wapE [-]
2 Clostridium tetani E88 B/C NC_004557.1 - 121881 122064 CTC00166 CTC00165 [- COG1576]
3 Clostridium tetani E88 B/C NC_004557.1 + 378393 379025 CTC00385 [COG0691]
4 Staphylococcus epidermidis ATCC 12228 B/C NC_004461.1 - 1218568 1218671 SE1182 [COG0735]
5 Pseudomonas syringae pv. tomato str. DC3000 P-g NC_004578.1 + 2306681 2307008 PSPTO2134 [COG3208]
6 Vibrio vulnificus CMCP6 chromosome II P-g NC_004460.1 + 1277519 1277867 VV21179 [-]
7 Vibrio vulnificus CMCP6 chromosome II P-g NC_004460.1 - 899426 899650 VV20831 [COG1020]
8 Lactobacillus plantarum WCFS1 B/C NC_004567.1 + 2109349 2109480 lp_2333 [-]
9 Methanococcus jannaschii A NC_000909.1 + 427040 427090 MJ0485 [COG0037]
10 Staphylococcus epidermidis ATCC 12228 B/C NC_004461.1 + 1908854 1909424 SE1872 [-]
11 Chlamydia muridarum P/C/V NC_002620.1 + 244060 244259 TC0211 [COG1026]
12 Clostridium perfringens B/C NC_003366.1 - 2419485 2419684 CPE2108 CPE2107 [- -]
13 Methanosarcina acetivorans str. C2A A NC_003552.1 - 2868313 2868823 MA2330 [-]
14 Shewanella oneidensis MR-1 P-g NC_004347.1 - 1231779 1232239 SO1187 [-]
15 Oceanobacillus iheyensis B/C NC_004193.1 + 3528921 3529098 OB3391 [COG1794]
16 Mycoplasma penetrans B/C NC_004432.1 - 832200 832493 MYPE6490 [-]
17 Vibrio vulnificus CMCP6 chromosome I P-g NC_004459.1 - 1837069 1837188 VV11839 [COG1720]
18 Vibrio vulnificus CMCP6 chromosome II P-g NC_004460.1 + 901742 902112 VV20835 VV20836 [COG1169 COG1021]
19 Staphylococcus epidermidis ATCC 12228 B/C NC_004461.1 - 1831172 1831273 SE1771 SE1770 SE1769 [COG0477 COG4264 COG3457]
20 Staphylococcus aureus subsp. aureus N315 B/C NC_002745.1 - 312679 312928 SA0257 [COG0500]
21 Chlamydia muridarum P/C/V NC_002620.1 - 600575 600681 TC0497 [-]
22 Neisseria meningitidis serogroup B strain MC58 P-b NC_003112.1 + 1476519 1476802 NMB1436 NMB1437 NMB1438 [COG0247 COG1556 COG1139]
23 Staphylococcus aureus subsp. aureus N315 B/C NC_002745.1 - 315172 315402 SA0260 rbsD rbsK [COG4975 COG1869 COG0524]
24 Staphylococcus aureus subsp. aureus N315 B/C NC_002745.1 + 353284 353490 SA0298 [-]
25 Methanococcus jannaschii A NC_000909.1 - 106420 106610 MJ0109 [COG0483]
26 Vibrio cholerae chromosome II, complete chromosome P-g NC_002506.1 - 514727 514943 VCA0575 [COG0583]
27 Bacillus subtilis B/C NC_000964.1 - 1052734 1052999 yheC yheD [COG0189 -]

0  ________________________________________________________________________________
1  TCTTATTAATATTTTAACAATAAAAGGTTAGGACAAAAGTCCTGCCTTTTTCAAATATATTAGGCATAGTAGCTTGAAGT
2  TTTTGTATGCGAAAAGCATTTAGATACTTGTATAGATGATTTCGTAAACTTGTTTGAAACCTTTCCAATTTTAAAT----
3  AAAATATTATACAGTTTTTTATTTAGTGAATAAGTAATGGTGAATAGCAATGGAAGGAATTCTTTAGTAAAATTTCTTAA
4  --------------------------------------------------------------------------------
5  GGAATTCACCTTGCTGCAAAGCCAATGG----------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  GTTTTATCATCCCCAAAACTAATTTAGATTAACCATACCGCAC-------------------------------------
9  --------------------------------------------------------------------------------
10  ATGTCTTCCTCACGATGTCCTAGTGTGTATTTTAAATTAAACTTCTCCCCGATTGCTAAACTAAATATAACTAGACAACA
11  --------------------------------------------------------------------------------
12  AAATTATGAATAAGCGTAGATTAGTAATAGTGCTAATTTACGCTTATTTTTTTGTTTATTAACA----------------
13  TTATTTTATCCCCCATGTTTTGGTTCTATTTGCTGTAGAATTCTTTCTAACATCAAGTGTTGCCTTATTTCTGTCCAGAA
14  TGAGACGTAGACATGGATAATGCGTGCATAGGAAAGGGATGATTTACTGACTTTTAATTTCAATGACTGACTCTCAAAAA
15  --------------------------------------------------------------------------------
16  TCTTTTTGTAAATAAAAATAAACAAACTATATAAAAAAAGTAGAGTTAACAGGAATTAACTCTACTT-------------
17  --------------------------------------------------------------------------------
18  AAAAACGTTATCTCTTTAATCTGTGTTCACTTATCCCGTCATGGATAT--------------------------------
19  AATTCACC------------------------------------------------------------------------
20  ATGAATCAAACACAGCTATGATATGAAGGTTTAGCATATAACATGCAACATTCGTATATCATGGCTGTGCTTTTTTATCT
21  TTCATGGGAAAGTTTTCTTAAACTAGTTATAGCTAGGTTGAGATCATAACAATTTTTATTTAATCG--------------
22  AGGGCGATTGTACCCCATCCTTGTGCCGTTATTGTTTTCAGATGCTGTCTGAATGC------------------------
23  CTACGTATCTTCCG------------------------------------------------------------------
24  TTTTATTAAGCCGGTACATCA-----------------------------------------------------------
25  --------------------------------------------------------------------------------
26  --------------------------------------------------------------------------------
27  TCCTATTCATC---------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  CAGACTGCTTAACTTTCTATTTTTGTCGATATGCTCTTAATTGTATTC--------------------------------
2  --------------------------------------------------------------------------------
3  ACCAATGAAAACCCATGTGTTAATAATTAACACATGGGTTTTCATTATTAATGGA-------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  TCTATTTTTCAGTGTCTATTATACAACTCTCAAAAAATTAGTAGTAACAAATTAGATTTTAATTATATCAATTTTCTTTT
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  GAACCTTAAGAACTCCTATGATCTCCAGTATATAAACTCCTCTCCGGTTTAAACTTCTACTGAGGAGTTCATCTCCCG--
14  AGGCATTTCAGGAATAGCTACCTAAAATCGCCAA----------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------
19  --------------------------------------------------------------------------------
20  TTATAAAACATCATCTATTAGAAATAATTTTCCACTAAACCTATGCTTGTTGACTCATGTTTAGTTATAAATGAAGTGAC
21  --------------------------------------------------------------------------------
22  --------------------------------------------------------------------------------
23  --------------------------------------------------------------------------------
24  --------------------------------------------------------------------------------
25  --------------------------------------------------------------------------------
26  --------------------------------------------------------------------------------
27  --------------------------------------------------------------------------------

  
0  ___________________________________CTGAGAGCATAGACTCTCAGCTTTTTTCA__TATAGAGAAGAAGT
1  -----------------------------------ATTTTTTACAGAAATGTAAAAAAAATGTG--TCCATAATAAAATT
2  -----------------------------------AGTATTTCTAATTTAAAAAATGTAACATG--CTTATACTGTAATT
3  -----------------------------------AAAAAAAGTATTCTTATAAATATTGACTA--AATAAA-AACAATA
4  --------------------------------------------------CAAGCAAATCTCCT--TGCTTTTTACCGAC
5  -----------------------------------GGGGGAGGGCTGCACGAGAAGCAGCGCCG--TCACATGGGGCAAC
6  ---------------------------------------------------------------------AGAGACACCTT
7  --------------------------------------GTTTCCCCCTGAGCCATATCGGTAAC--TGAGTTGTAAAAAT
8  -----------------------------------TCACTAACGCAACGCTACCCCCTTCCCTT--CGCTATTATTGGAG
9  --------------------------------------------------------------------------------
10  CTATTTATATAGCTTTTTCAAAATATTGCTCAATCATATCATCAAATCAACGTAAAATATCAAA--AATTCAAATACTGT
11  --------------------------------------------------------------------------------
12  -----------------------------------TATAATTTCTAATAAGTTAAAAAACTTGA--CATATTTTTGAAGT
13  -----------------------------------GATTCAGATATCAGTTGCCTTTCCCAATT--AAGTTGTCACCCAC
14  -----------------------------------AACTCAGCAGA-ACTTAGTGCCTGTATGA--AATAAA-ACGAA-T
15  -----------------------------------------------------CTGTCCTAATT--CCCCCCTACTTTTC
16  -----------------------------------TTTTATTTTTATCCATTTAACATATTTCATTTATATATCAAAAAT
17  -----------------------------------------------------TTTTCTCTCTC--CAATAATTGTTATG
18  -----------------------------------CTGCACCCATGCTATAAATTCGTGATTTA--ATGCACAAAAACAA
19  -----------------------------------TCTAAAAAATATTTTACAAAAATAAATAA--CATTTGTATAATCC
20  AATTTTTT---------------------------GTAATCTTTTTAACTTCCAAATTATTGCA--TATAAATATGCTAT
21  -----------------------------------GTTTTCCTGTAGCTTATCGGCTTTTTTCA--AATAGAGAAGCC--
22  -----------------------------------CGTCAGAGTCGGCATCTTGAATGTTCACA--AGCAAACGAACCGG
23  -----------------------------------AAATATACTCATCATTGTTAGGCCCTTAG--CGTTGCTTTAATGC
24  -----------------------------------TGTGCCGGTATTTTTATGTTTATGTATTA--TTTGAATAAACTTT
25  ---------------------------------------------------TGAAAGCTAAATA--TAGAAAGTGGGGCT
26  -------------------------------------------------TTTCCATGTTGAGTA--AAACGCAGGAATTC
27  -----------------------------------TTCCTCCATCTGTGCTTCAGCTTTTTTCA--TATAGATTATGTAC

  
0  G_AATA_A_AC_ATT__A_ATGA_TAATTATTATCAA__AA__A____G___A__AA__T____TA__AAATAA___TTA
1  A-AATC-A-TG-ATA--A-ACTA-TA-TTATTATTTT--AA--T----G---A--CA--T----TA--AAATAA---TAA
2  T-AAAA-G-CC-AAA--T-ACAA-TATAAGTTATCCA--AA--A----G---A--AA--A----TA--AA-TAA---TTC
3  T-TATA-T-ACTATT--A-ATGA-TAATGATTATCAA--TACCA----T---A--AA--T----AA--AAATTAAACTTA
4  A-ATAT-T-GG-TAT--T-TTAT-TAAATGAATCATG--GA--T----T---A--AA--T----TA--AAATGA---TTA
5  A-AATT-A-GC-CTT--A-ATGA-TAATTATTGTCAA--AT--G----C---G--AA--A----GC--CAATCA---GCG
6  A-CATT-A-AT-AT---A-ATGA-TAATTATTATCAT--TT--A----T---C--AG--G----TG--TTATGC---GTT
7  A-AATA-A-TG--TT--A-ATGA-TAATTATTATCGT--TA--ATGTCG---G--AA--T----TATTAAGAAA---GAG
8  G-AACA-T-GC-TAC--A-ATGA-TAATTATTATCAAGGAA--A----G---G--AT--G----TT--AGACA-------
9  ---------------------------------ATGA--AA--T----G---A--AA--T----TA--GAATAA---TTA
10  T-TATT-C-AC-ATTGCT-ATGT-TAATTATTATCAA--AA--A----G---A--AT--T----TT--CAGTAA---TTT
11  --------------------------------------------------------------------------------
12  GTAATATA-AT-ATT--A-ATGA-AAATCATTATCAA--TT--A----GGTAA--AA--T----TA--AATTAG---GGG
13  C-ATAG-G-GC-ATT--ATATGA-TTATTATTATAAA--AA--A----G---A--AT--TCAACTC--AAACAT---TTA
14  G-GCTG-A-TA-GTA--A-ATGA-TATTTATTATCAA--AA--A----G---T--A---T----CA--TGTTTA---CAA
15  A-TCTA-A-AT-AAT--A-ATGA-TAATCATTATCAA--TA--A----C---ACTAC--T----TC--ACAATC---TTA
16  G-GCTT-A-G--ATT--G-TTAA-TAATTATTATCAA--AA--A----T---G--AA--A----TA--AAAGAC---ATA
17  T-TATA-ACAT-ATT--A-ATTAATAATTATTATCAA--CA--A----G---A--AA--T----GC--AAGAGA---AAA
18  A-CTTA-G-AT-ATT--A-ATGA-TAATTATTATCGT--TA--G----C---A------T----TT--AAATCG---TGA
19  A-TATT-A-AT-GAT--A-ATGA-TAATTATTATCAA--TG--A----A---A--AA--G----AC--AGGTGG---AAT
20  ------------ATT--A-ATGA-TAATAATTATCAA--TT--A----A---A--AG--G----AG--GTTATG---CT-
21  --------------------------------------------------------------------------------
22  C-ATTG-C-AT-TGT--A-ATGA-TAATTATTATCGA--AA--A----C---C--AT--C----AG--ATTAAG---GTA
23  T-GAGG-G-TT-TTT--A-ATCA-TAATTATT-TCAC--TA--A----G---A--AA--T----TA--AAATAA---TAA
24  C-ACAT-T-CA-ATT--A-ATAA-TAATTATTATCGA--AA--ATTA-G---A--AATAT----TC--CGTGAA---ATA
25  G-AACA-T-AG-TAA--A-GCCC-ACTCGGAGTATAG--TA--A----T---A--GA--G----GT--TCCTCT---ATA
26  T-AATA-A-AT-ATT--A-ATGA-TAATTGCTATCAT--TT--G----T---G--TT--T----AA--TTGTTT---GCT
27  C-TATA-C-GT-ATT--A-TAGA-GGCTCATGCAATC--AC--T----T---A--GC--A----AA--CGAGGA---GAC

  
0  T_A_ATTG__A___AATTCTCTTCG__TGCGT_GCT_ATA__ATAAA___GGA_AGACA__TCAA______GAA__ATAA
1  T-A-ATTT--A---TTTATGAGAGG--AAAAA------------------------------------------------
2  T-A-ATTA--T---TCAAAGGAGAA-------------------------------------------------------
3  TTA-AGGG--G---GATTGAGATA---TGAGT-GCA-TTG--GTAATTGGGGG-AGACAAATTAG------GAAAAATAA
4  T-A-ATTC--T---TAGTAGAGGAG--TGAGG-CTT-CC-----------------------------------------
5  C-A-CTTT--A---AAAGTGCGACT--CGGTT-GGC-CAC--GCGCT---CGC-GGCGG--GCAT------TCA--CGCC
6  T-G-CAAA--A---GAAGGAGGCAA--GAATT-TGT-TGA--AGTGG---CTC-GAAAG--ATTG------TGG--TGAT
7  G-A-ATCG--A---TATGTCAAGCC--GAAAT-CTT-GCT--CAAGT---CAC-CCTAT--GCTA------ACC--AGTA
8  --------------------------------------------------------------------------------
9  T-A-AAAT--A---AAAAAACAAAC--TGGGA-TAA-AA-----------------------------------------
10  T-ACATTC--ATGTAACAGTGTTTG--TGT-T-GCTCAAA--ATAAA-------ATACT--TTAA------AAA--AGCT
11  -------------------------------------------TGCA---GAC-TTTTG--TTCT------AAA--AGAT
12  G-G-AACA--A---ATTAATTTTAT--AAAAA-TTT-TAA--GGGGG---ATA-AAC-----------------------
13  T-T-AGAA--G---CTAAATATTGG--TCATA-TTA-TTT--CCACA---TTC-TGAGA--AAAA------CAG--AGTT
14  T-C-TTTAC-A---CATTCAATACG--ATAGC-GC--AGA--AGAAA---GGT-CATAG--CGGT------TGG--TTAA
15  A-A-CTTGTCA---AAGTATTTTTAATTAGGTAGCT-TTAGAAGGAA---GGATAGAAA--TCTGATTTTTGAA--AAAT
16  T-A-TTTT--T---TGCATTTTCTT--TCCTA-TTT-CTT--AGAAA---TAA-TTCCT--GTTA------GGT--CTAC
17  C-T-GTGA--T---ATTTTTCAGTC--CATCT-GTT-GTT--TTTTA---TTT-GACTC--ACT----------------
18  T-A-ACTG--T---AATCTTACTCC--ACTGA-ATA-AGC--AACCT---ATA-CCCAA--CCGA------TGA--CATT
19  T-T-G---------------------------------------------------------------------------
20  --------------------------------------------------------------------------------
21  --------------------------------------------------------------------------------
22  C-A-GTAA--G---CGTTATGGGGG--CAGTT-TGT-AAG--AAAAA---CCG-GATTA--TTTT------TTA--AAAT
23  T-G-TATG--A---ATTTTTAAATA--TGATT-TAA-ACG--TTTTC---AGT-TTTTA--TGAA------AAC--GCAT
24  T-A-ATAT--T---TTTTGTAGTAA--AATGG-CCT-CTA--AGTAT---TCA-ATATT--TAAA------TAT--GGGG
25  T-G-CTTG--C---GATACCGATAA--CCTAT-CTT-AAA--ATAAA---GGA-AGAGA--TGAA------GAA--AT--
26  T-A-ATGT--G---AAAAGAACAGG--ACTTG-AGT-TTT--CTAAA---TGA-ATTTT--ATAA------TCA--AAGG
27  A-A-ATTC--C---TGTTCTTAGAA--AATCA-GCT-TGT--TCTTT---TGG-AATAG--GGCA------AGG--TGGA

  
0  CTGACGATAAAGCTGCCT_TTTGGGCAGCG_ATTTTGTTTTTATAAG___AGAAATGAAGATGATTTACGTTCTCAATTA
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  GAGATGAGTTGGAAAAAA-GAGGATTTAAT-AAAATAGAACATATAA---GCGGGAGAAAAAGTAGTGATAGGAAGGTTA
4  --------------------------------------------------------------------------------
5  TAATTATTTGCAGACGCC-ATCCGTTCTCA-TTGGTGACAGGCCCGA---CCACGGTTGCGGCCAGGGAATACCTCAGGA
6  TGATGGGGAAAAGCCATG-CGCTCAGCCAA-GAAAATGAGAGCTTGA---TCAGCTTATTTTTGCAGGGGCAATTTCTTG
7  AAATCAACAAGATGAACT-GACATTCTTTC-ACTACAAGCCTCGTTG---TTTGGCATTTTAATTACTTTACATGTAAAT
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  GAGCGTATCATTTCTATT-CATATTACATA-AATTAATTGGGTTAAA---TGAGATTGTGTAACAATATTAGCAAAAAAT
11  CTAGAGAAAGGGGGGGCT-CGATTGAGCCC-CTTTTCTTTTTATAAG---AGAAAAAATTAGAAAGAATATTTGTGTGGA
12  --------------------------------------------------------------------------------
13  TTGAGATCGTATGATTTA-TCAGGCAATTT-ATGGGATACCCTGGCT---GTATCGTGCCCTGATGTGAATTCACTATCC
14  CAAGGGTCGCATACCATG-GGCAAATGACA-CATCGCAACAATTGAA---AAATGTTCATTAATTCAAACAGATAAAAAT
15  ATAATTACCAAGCTGCTTCTCTGAGGAGGG-AAAAGA-------------------------------------------
16  TTAATAATTTTCATCTAT-TTAACTAGTAA-ATTTGTCTTTTTTAAA---ATTTCAAAATTTGAAAGGTAATAATTATTA
17  --------------------------------------------------------------------------------
18  GCAGGCCAGACAAACATG-CCGACTCACAA-ACATAACGAGTCTATG---GCATTGAGATCAGTCCGTCGCCACCACCGC
19  --------------------------------------------------------------------------------
20  --------------------------------------------------------------------------------
21  --------------------------------------------------------------------------------
22  TAGACTTGACCCGCAACA-GTCAATTACTT-AAAGTAAACGCTTACC---TTTCTACAGAGAAAAACGGGTTTCCCGTTA
23  GCATTTTGCAAATAAAAA-TGGTACGATGG-CATTGGTAAAACGTTT---TACTAAAAACAAATCGTGAGGTGTATAAC-
24  ATTGAATATAAAATTATC-GTAATGGGGGT-CAATGGTT-----------------------------------------
25  CTTA-GATAT---TGACT-ATT----ATCTTATTTTGTATATTTAAATTTAAAAATAAAGCATAGGATGAGAAA------
26  GTTATATTATTCATAATG-GCATTTATGAT-GTTGCTAATTGTGACT---CTCATCACAGTTGGCGGTGTGAACTATCAA
27  GAATCGTATTCTGTAAAG-TAGAATACCGT-CAGCTGCGTTCGTCTT---ACATGTATTTAGTGTAAAGCTGCGGACACC

  
0  GAGAGGAGAATTCGAT________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  GAATTTCTAATAAGGCAGAGAGGGCAGATATGGTATTAGTATTAACTGATTTTATTAATCATGGGGTAGTGACTAATCTA
4  --------------------------------------------------------------------------------
5  GAACCCCATGCGTTTCGATCACGCGCCTCGCCGCTTTTACACCCGCGCCCACCACCGGACGGTTTCGATATGAGCACGCC
6  AATGTACTTTGTCGATTTCGATTAAGCAAAAAGTTAATGACGGATTTATAATTTAGTTGGTAGAAGAGTGGAAATGGTCA
7  GATA----------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  TACAAATCAATAACAATGCACACAAACATCAATTTTTCTGTTAGAGTATGGCTTGTCGTTAAACAAGAACGAATAAAAAT
11  TATAAGAGACTCAACCATGTAGTCTGTCTTTCTTATTGTTAGGTAGAAATGAAGTAGAGGAGTAACAGATTAACTCCTCC
12  --------------------------------------------------------------------------------
13  CATAATCAATATATTTCCAGAGCTCTTGCAGCCATGAGTGGATTGAATTTCCTCCTTAATTATCCTGTACCGAGAAAAAG
14  CAACATCCCGACTAAAAATCACACCTAAAATTTACCTGTTTTTCCCTCTCGTTTACAGAATCGCAATCAGCTACAATCCG
15  --------------------------------------------------------------------------------
16  ACTAAAT-------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  AAAGTTGATTCAGTTGGGAAAAGAGTGCACTCCTTTATCCGCACATTGCGCCGCTAAAAGAGCACTCTTTCGTATACCAC
19  --------------------------------------------------------------------------------
20  --------------------------------------------------------------------------------
21  --------------------------------------------------------------------------------
22  TCAAAAAAC-----------------------------------------------------------------------
23  --------------------------------------------------------------------------------
24  --------------------------------------------------------------------------------
25  --------------------------------------------------------------------------------
26  TAGGAGAGAGCA--------------------------------------------------------------------
27  CGCCGGCAGCTTTTGAATAAAAGGGAGAGTCTCACC--------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  AAGAATAATGTAAATAATCCTAATGTAATATTTAGTAGAAGAGCCTGGGCTTTTGTAGAAGAAGCCTTAAATGGATTTAT
4  --------------------------------------------------------------------------------
5  T-------------------------------------------------------------------------------
6  CATTTCCTCACTGTTTTGCTTAATTCACGAAATCGGGTTTGCTATAGATCGGGTGTCGAAAACATGGTGCGTTCGGAGGA
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  TTATTTTGTAACTCATTGATCACATGATTATTAATTATAAAAAACTAGTTTAATTTTTAGGAGGATATTTAACA------
11  GTTGTAGAAGATTGAGTGGGAT----------------------------------------------------------
12  --------------------------------------------------------------------------------
13  TTATGGAGAAGTTTTTAAACAGGTTTGTTTTTAACGAATAACCCGCAGA-------------------------------
14  CCGCCGGCGACTTGCTGGTACTTCCAAAGGAAATATCATCTTGAGTACAACT----------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  GATCGAAATATCTAGAGGGATCTGTT------------------------------------------------------
19  --------------------------------------------------------------------------------
20  --------------------------------------------------------------------------------
21  --------------------------------------------------------------------------------
22  --------------------------------------------------------------------------------
23  --------------------------------------------------------------------------------
24  --------------------------------------------------------------------------------
25  --------------------------------------------------------------------------------
26  --------------------------------------------------------------------------------
27  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  GAATAGCCAATTAAATAGTTAAAGCTATAAAGTTCTTTGACTAGGAATATAAAGTATTATATAATTATATAACACAGGGA
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  GAT-----------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------
14  --------------------------------------------------------------------------------
15  --------------------------------------------------------------------------------
16  --------------------------------------------------------------------------------
17  --------------------------------------------------------------------------------
18  --------------------------------------------------------------------------------
19  --------------------------------------------------------------------------------
20  --------------------------------------------------------------------------------
21  --------------------------------------------------------------------------------
22  --------------------------------------------------------------------------------
23  --------------------------------------------------------------------------------
24  --------------------------------------------------------------------------------
25  --------------------------------------------------------------------------------
26  --------------------------------------------------------------------------------
27  --------------------------------------------------------------------------------

  
0  ___________________________
1  ---------------------------
2  ---------------------------
3  AACATAATATTTGAAGTAGGTGTTGGT
4  ---------------------------
5  ---------------------------
6  ---------------------------
7  ---------------------------
8  ---------------------------
9  ---------------------------
10  ---------------------------
11  ---------------------------
12  ---------------------------
13  ---------------------------
14  ---------------------------
15  ---------------------------
16  ---------------------------
17  ---------------------------
18  ---------------------------
19  ---------------------------
20  ---------------------------
21  ---------------------------
22  ---------------------------
23  ---------------------------
24  ---------------------------
25  ---------------------------
26  ---------------------------
27  ---------------------------