BLISSBreaker Lab Intergenic Sequence ServerHome

Intergenic view options: Interleaved

NC_000964.1 Bacillus subtilis (+ 101206 to 101445) circular

Term (100.00)%  ---------CCCAGCTCAATGAGCTGGG----------------------------------------------------
Islands  AAGC..,,,CCCAGC.CAA.GAGC.GGG......G.A....GG...A..GG.A.CA.,,,,..CCAC..AAC.G.A.AA.
5'-   AAGCTTAAACCCAGCTCAATGAGCTGGGTTTTTTGTATTTTGGTTTATTGGTATCATAAAATTCCACTTAACTGTATAAT
      |         |         |         |         |         |         |         |     
      101210    101220    101230    101240    101250    101260    101270    101280
      |         |         |         |         |         |         |         |     
3'-   TTCGAATTTGGGTCGAGTTACTCGACCCAAAAAACATAAAACCAAATAACCATAGTATTTTAAGGTGAATTGACATATTA
Islands  ..CGAA...GGG.CGAG..AC.CGACCC,,,,,,CA.,,,,CC,,,.AACCA.AG.A....AAGG.GAA..GACA.A..A
Term (100.00)%  ---------GGGTCGAGTTACTCGACCC----------------------------------------------------

  
Islands  A.AA.AAC...A.ACCGAA....,,,.CAGCAA.CAGG....G.GGACCGGG,,,,.GG,,,.AA.GAAGGA.AGAGCGA
5'-   ATAATAACTTTATACCGAATTTTAAATCAGCAATCAGGTTTTGTGGACCGGGAAAATGGAAATAATGAAGGATAGAGCGA
      |         |         |         |         |         |         |         |     
      101290    101300    101310    101320    101330    101340    101350    101360
      |         |         |         |         |         |         |         |     
3'-   TATTATTGAAATATGGCTTAAAATTTAGTCGTTAGTCCAAAACACCTGGCCCTTTTACCTTTATTACTTCCTATCTCGCT
Islands  .A..A..G,,,.A.GGC..,,,,...AG.CG..AG.CC,,,,CACC.GGCCC....ACC...A..AC..CC.A.C.CGC.

  
Islands  G,,,G..G,,,,..C.CGAG,,,CGGC..A.AG.AAGA..,,,G.C,,,.A.AG.C,,,G.CAG.,,,GGAGGGGG..GA
5'-   GAAAGTTGAAAATTCTCGAGAAACGGCTTATAGTAAGATTAAAGTCAAATATAGTCAAAGTCAGTAAAGGAGGGGGTTGA
      |         |         |         |         |         |         |         |     
      101370    101380    101390    101400    101410    101420    101430    101440    
      |         |         |         |         |         |         |         |     
3'-   CTTTCAACTTTTAAGAGCTCTTTGCCGAATATCATTCTAATTTCAGTTTATATCAGTTTCAGTCATTTCCTCCCCCAACT
Islands  C...CAAC....AAGAGC.C...GCCGAA.A.CA..C.AA...CAG...A.A.CAG...CAG.CA...CC.CCCCCAAC.

IGR  +  101206  101445  ()  14  ctsR yacH yacI clpC

Blast Hits

ID Organism Class Accession Start End Operon
0 Bacillus subtilis B/C NC_000964.1 + 101206 101445 ctsR yacH yacI clpC [COG4463 COG3880 COG3869 COG0542]
1 Streptococcus agalactiae B/C NC_004116.1 + 504132 504286 SAG0489 [-]
2 Shewanella oneidensis MR-1 P-g NC_004347.1 - 2968666 2969192 SO2850 [COG1670]
3 Oceanobacillus iheyensis B/C NC_004193.1 + 933950 934209 OB0881 [COG0542]
4 Oceanobacillus iheyensis B/C NC_004193.1 + 109243 109438 OB0090 OB0091 OB0092 [COG4463 COG3880 COG3869]
5 Staphylococcus aureus subsp. aureus N315 B/C NC_002745.1 + 946419 946620 clpB [COG0542]
6 Listeria innocua Clip11262 B/C NC_003212.1 + 271470 271617 lin0261 lin0262 lin0263 clpC [COG4463 COG3880 COG3869 COG0542]
7 Listeria monocytogenes strain EGD B/C NC_003210.1 - 1029046 1029207 clpE [COG0542]
8 Listeria innocua Clip11262 B/C NC_003212.1 - 1020650 1020812 clpE [COG0542]
9 Bacillus subtilis B/C NC_000964.1 + 35347 35528 csfB [-]
10 Bacillus halodurans B/C NC_002570.1 + 131957 132791 ctsR BH0101 BH0102 clpC [COG4463 COG3880 COG3869 COG0542]
11 Bacillus halodurans B/C NC_002570.1 + 2302099 2302326 clpE [COG0542]
12 Listeria monocytogenes strain EGD B/C NC_003210.1 + 248407 248554 lmo0229 lmo0230 lmo0231 clpC [COG4463 COG3880 COG3869 COG0542]
13 Bacillus subtilis B/C NC_000964.1 + 176308 177081 ybaR [COG0659]

0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  CTAATTTGATTTCACTTTTAAACGTGAAGACAAACAGTCTCGTAAGA---------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  AAGC----------------------------------------------------------------------------
10  GTGAAACCGCCGTATACGGAACCGTACGTACGGTGGTGTGAGAGGTCGGGGGTTCGTCACCCCCTCCTACTCGATTGTCA
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  AAGC----------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  AAAAGTAAAATCGTTTCTACAAGGAGGACCAAGAGATTTGCGGAAGCAAGGGAGAGACGGACTGAGCGTATATCAACATA
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  CGTGACAGGAGGGAACGAGCGTAGCTGACAAAAAAGCTCGCCGGTCATCTGAAGTAGAAAAGGCGCTGAAGAGCGTTGGT
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  CCGAAGGAGCAGAGTCATCACTGAAAAGCCGATGGATACACCATGAAAAGACGACAAAGAAAAGCGTCATGTCCCCCCTG
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  CGAGACGACCCCATTCTCTTCGTAAACATCGTGAGAAACGACAGAGCGAAACGACGTGGTAAAAGACCCCCGTAGGAGAG
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  AAAGGGGGAGCCCAAGGACGCTGCCAAGCAGAAAGCACAATCCAGTCGGGTTATGCTTTTTAAGTATGTGAACAACCATA
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  --------------------------------------------------------------------------------

  
0  ____________________________________________________________AAGCTTAAACCCAGCTCAAT
1  --------------------------------------------------------------------------------
2  ------------------------------------------------------------GAGCATAAAGCCAGCTGAAT
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  ------------------------------------------------------------AAGCTTAAACCCAGCTTAAT
10  CTAAAACTAAGAACTCCAATGGAAGCAAAGTCCCCCAAACGTCAACAGGGGACCTTTTAATACTATGCTAAATGGATGAA
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  ------------------------------------------------------------AAGCTTAAACCCAGCTCATT

  
0  GAGCTGGGTTTTTTG__TATTTTGGTTTATTGGTATCATAAAATTCCACTTAACTGTATAATATAATAACTTTATACCGA
1  --------------------------------------------------------------------------------
2  AAGCTGGCTTTTTTG--C-TTTTG--TTATT----TCA-ATTTTTACATTTAAGACTCTTCAACAACACCTTTCCAATCG
3  ------------------------------AATGGGAATAGTAATATTGTAAAGGTTAAAGGAGCTGTTTTCATCTACGG
4  -------------------------------------------------CCTTATATCGTAAGAGATTCTTTAAAAAAGG
5  --------------------------------------------------CATATGTTTAATAAGTCTAGTTAATGTGTA
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  -----------------------------------------------------------------------------AAA
9  GAGCTGGGTTTTTTGTTTACTCAAGATCGAGAAAATCAAACAAATACAAACACCGAGGGCTTATATAGCCCATATACTGA
10  ATGAAGTGTTAACAA--TACATTAGATAAAAAGGAGGCTACCAACTCAGGGAATCTTGTAATATAAGCGAATGGAGTCGA
11  -----------------------------------------------CGTCTTTCCTCCTTCAGTTCCTTCTTCTACTGT
12  --------------------------------------------------------------------------------
13  GAGCTGGGTTTTTTG--TTTTATATCTGTGCCGATTTGCTTTCGTCAGTATCCATTTTATCAAGCTTCTGCTTTTTAAAG

  
0  ATTTTAAATCAGCAATCAGGTTTTGTGGACCGGGAAAATGG____AAATAAT__GAAGGATA_GAGCGAGAA_AGTTGA_
1  --------------------------------------------------------------------AGGC-TACCCC-
2  CCCTAACGCCAAGATGTTGTGGGGTATTCTAGCCCTGTGTC----AGTAATG--CCAAATCA-TTTGCTCAA-ACGATC-
3  CTCCTTTTGTGTATTTTAATAACTTGGCAAAGGTCAAACTT----TTTATAA--AAAAATTT-GACTAAAAT-ACTTGA-
4  TCTTTTACGATATAAGGTTTTTGTTTTGATTTTAGTATTAT----TTGTCTA--AAATAAGA-TATGTAATC-TATTTG-
5  ACGTAACATTAGCTA---GATTTTTTTATTCAAAAAAATATTTACAAATATTAGGAAATTTAAGTGTAAAAG-AGTTGA-
6  ------------GGGCAATAGTAAAAGTCCTAATTATTTAG----GGCTTTT--TTTGTTAT-AAAAAGATA-AATAAA-
7  ---AAATAGCACAAAAACGTTCCTTTATAGGGGCGTTTTTT----TTATAAA--AAAAG-TA--AGCAAAAT-ACTTGA-
8  ACTTAGAAACATTCCTTTTTTATAGGAATGTTTTTTTATGA----AAAATTT--GAAGCAAA-ATACTTGAA-AGTCAA-
9  --TTTAAAGTTTCAAAAAGGTCTAAATAGTGTATACAATAT----CCGTTTT--AAGGGGAG-GCTAACTGT-ACGGAG-
10  ATCATAGATGA-CGAT----TGTTCTGCATTAGGAGAATG-----AAGCGGT--GAAAAAAA-GGGCAATACTAGCTGAT
11  AGCAAATCTAGTCACTTCCATCGAATGTTTTGATTGGTTTT----CTAACAA--TATCTCCA-AAAATTTCT-TTTTAA-
12  ------------GGGCAATTTGAAAAGTCCTAATTATTTAG----GGCTTTT--TTTGTTTG-TAAAAGATA-AATAAA-
13  TTTTCTAATACTTTTGAATTCCAATACAATCCCTAGCATGA----TCAACAT--GAGAGTCA-TAAATAATC-AAAATG-

  
0  __AAATTC_TCGA____GAAAC_____GGCT___TA__TAGTAAGAT__TAA_AGTCAAATATAGTCAAAGTCAGTAAAG
1  --TTTCTT-ATGA----CATTT-----AACT---AT--TGATGTGTA--TAT-AGTCAAATATAGTCAAACTTTATGCTT
2  --TGAATA-ATAG----TCATA-----AGGC---CT--GTCCAAACA--CGG-ATGTACAGAGGCTTCATATCAAACAAC
3  --AAGTCA-AAAT----AGGTC-----AGAG---TA--TAATGTAAA--TAT-AGTCAAAGATAGTCAAAGTCAAAAATG
4  --CAAGTT-TATT----TAATT-----AGCG---TA--TAATAAAAA--TAT-AGTCAAAGATAGTCAAAGTCAAAAACA
5  --TAAATG-ATTA----TATTG-----GGAC---TA--TAATATAAT--TAA-GGTCAAAGAAAGTCAAAGTCA--AAAG
6  --TTGCTA-AAAG----GTACA-----GGTA---TC--TAGTATAAT--TAA-AGTCAAAAATAGTCAAAGTCAGTGATT
7  --AAGT----CAA----AATAG-----GTCAGTATA--TAATAAAGTCATAA-GGTCAAAGATAGTCAAAGTCAAGACCT
8  --AATAGG-TC-A----GTA--------------TA--TAATTAATTCATAA-GGTCAAAGATAGTCAAAGTCAAGACCT
9  --GTGGAG-AAG--------------------------------------------------------------------
10  GTGAATTCATTGACACTGAGACAATATGGAT---TA--TAATAAAAT--TAG--GTCAAAGATAGTCAAAGTCAATCCAA
11  --AAATCC-TTGA----CAACTTT---GAAT---TCCTTCGTTAAAT--TAATAGTCAAAGATAGTCAAAGTCAAATTTC
12  --TTGCTA-ATAG----GTGGG-----GATA---TC--TAGTATAAT--TAA-AGTCAAAAATAGTCAAAGTCAATGATT
13  --CAGTTT-GTAC----GGGAG-----ACTC---AT--CCAGACTCC--ATC-CGACTGCGATTGGCAGGATAGAGCCGC

  
0  GAGGGGGTTGA_____________________________________________________________________
1  TTATTATAGCACCTAAAGCCTAGAAATCAAGAAAAAAGTTCTGTTTTTAGCACTGAATATATTAGAGTGCTAAATTGAAA
2  TGATGAGAATAACTCAACGGCAGATTTTAATCGTATAGCAATGTACTTGAGGCACAGTCATTATTTAGTCACGAGTCGTT
3  GTTGTGACATCGCATAGGCGAAAGTCATATATTAAAAAGTAACAGGCTATCTTAACTGTAATTAGAGGAGGAATGAGAA-
4  AATTTACATCTTTATAAGATATGAGGTGCAAATT----------------------------------------------
5  TGCAACTTGACCAACTCTACAAATTAGAGGTGAAATTAT-----------------------------------------
6  TGGAAAATATGGAAAGGAGATTCCTTATA---------------------------------------------------
7  TTCATTTCTCATTTTTAAAAGGAGGAAATTATAT----------------------------------------------
8  TTCATTTCTCATTTTTAAAAGGAGGAAATTAACT----------------------------------------------
9  --------------------------------------------------------------------------------
10  TTGAACAAATTATTTGGAAAAACGTAACATAAGAAAGGGGAGAAGGGGGGCTTTTATGG---------------------
11  GTATTTTAAAAAGGTCAAAGTTAATCAAAGTCAAAAAAATAAATGAGGAGGTATGTATG---------------------
12  TGCAAAAAACAGAAAGGAGATTCCTTATA---------------------------------------------------
13  CAATCCATTGGCAGCGAACAGCATGCTTGTCGTTTGTTCTGTTTTTCCATGATAAAATTGATTGGTGACAATAAAATAAT

  
0  ________________________________________________________________________________
1  AATAG---------------------------------------------------------------------------
2  AACTCATTCATGAGCCAGTCATTTTCATCGGTGAAGCTTAAGATAAGCTTAGCTTTATCCTGAACATCAATTTATATAAT
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  GGCGAACATGCCGGCCATAAATAAGTCCTAAGAAAAAACTAAGAATAATCCCTGCAAAAGCTGTTTTATTGATTGCCAAA

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  CACATTGAAAATATGGGTTTTTTTATTTTCTATAAATGTTAGGCTAGTAAAAAATGTGCGCAAGGACACACTTTTTAGAG
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  ATACAGAGTTAAATGAGGCCGCTCATATTTATCAGCCTGAGATAATGATGATAGGTTATTTTTTCGGAAACCAGCTCGGG

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  AGTTAATGGAGATGAGATA-------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  TTGCCAAATGAGAGGAAAGATATTACTGTCATTAAAACGATTCTTGGTTTCATCCGGATATGATAAAATGTCTCAGACTA

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  TATTTGAGCCATTTTTTTCTTCAGCAATCATCTTGCGTAATTGATAAAAATTTATTATGATACTCTTTGTATGACAACTC

  
0  ________________________________________________________________________________
1  --------------------------------------------------------------------------------
2  --------------------------------------------------------------------------------
3  --------------------------------------------------------------------------------
4  --------------------------------------------------------------------------------
5  --------------------------------------------------------------------------------
6  --------------------------------------------------------------------------------
7  --------------------------------------------------------------------------------
8  --------------------------------------------------------------------------------
9  --------------------------------------------------------------------------------
10  --------------------------------------------------------------------------------
11  --------------------------------------------------------------------------------
12  --------------------------------------------------------------------------------
13  CTTGCCTCAATACAATATACTCAACGTTTCCCCGTTTTCTCCGGTCGTTTTTCTTTTCATTTTCTCCCGTAAAATAAAAA

  
0  _____________________________________________________________
1  -------------------------------------------------------------
2  -------------------------------------------------------------
3  -------------------------------------------------------------
4  -------------------------------------------------------------
5  -------------------------------------------------------------
6  -------------------------------------------------------------
7  -------------------------------------------------------------
8  -------------------------------------------------------------
9  -------------------------------------------------------------
10  -------------------------------------------------------------
11  -------------------------------------------------------------
12  -------------------------------------------------------------
13  AAGCTCCCAATACAATAGATATGGTGCGGATTTATTTTTTACTAAAAAGGAGTCGTTATAT